Wall clock time and date at job start Mon Mar 8 2021 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47424 * 120.00195 * 2 1 3 5 5 C 1.33385 * 125.20459 * 65.28377 * 4 2 1 6 6 C 1.38426 * 114.92449 * 180.21035 * 5 4 2 7 7 S 1.76199 * 122.54285 * 179.76269 * 6 5 4 8 8 O 1.42101 * 106.40207 * 23.27645 * 7 6 5 9 9 O 1.42094 * 106.39983 * 156.19709 * 7 6 5 10 10 N 1.65598 * 107.21633 * 269.73973 * 7 6 5 11 11 C 1.46495 * 120.00593 * 64.99862 * 10 7 6 12 12 H 1.09005 * 112.84780 * 344.66461 * 11 10 7 13 13 C 1.53777 * 113.61657 * 115.86308 * 11 10 7 14 14 C 1.54049 * 86.98589 * 89.16459 * 13 11 10 15 15 H 1.09001 * 113.60792 * 270.88189 * 14 13 11 16 16 C 1.50701 * 113.69442 * 139.99432 * 14 13 11 17 17 C 1.38218 * 119.98337 * 142.46967 * 16 14 13 18 18 C 1.38247 * 120.04104 * 179.97438 * 17 16 14 19 19 C 1.38308 * 119.99791 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 120.01673 * 179.97438 * 19 18 17 21 21 C 1.38485 * 119.96193 * 359.97438 * 19 18 17 22 22 Cl 1.73604 * 120.01869 * 180.02562 * 21 19 18 23 23 C 1.38258 * 119.97858 * 322.18680 * 16 14 13 24 24 C 1.53776 * 87.07529 * 25.43415 * 14 13 11 25 25 C 1.33388 * 114.91713 * 359.49564 * 6 5 4 26 26 S 1.75885 * 109.59465 * 0.26814 * 25 6 5 27 27 H 0.96702 * 113.99856 * 299.99567 * 1 2 3 28 28 H 1.09002 * 109.46980 * 240.00394 * 2 1 3 29 29 H 1.48497 * 109.99942 * 178.68048 * 3 2 1 30 30 H 1.48492 * 110.00096 * 300.00179 * 3 2 1 31 31 H 1.08005 * 122.54122 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99509 * 244.99913 * 10 7 6 33 33 H 1.09007 * 113.61809 * 203.67204 * 13 11 10 34 34 H 1.09002 * 113.61241 * 334.56654 * 13 11 10 35 35 H 1.08004 * 119.97796 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.00184 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.99788 * 0.03182 * 23 16 14 38 38 H 1.09007 * 113.60949 * 220.02302 * 24 14 13 39 39 H 1.09000 * 113.69295 * 89.13438 * 24 14 13 40 40 H 1.07996 * 125.20310 * 180.29185 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7581 -2.0063 1.4948 6 6 2.3057 -2.4359 2.6914 7 16 2.1895 -4.1057 3.2415 8 8 1.9844 -4.8977 2.0796 9 8 3.2721 -4.3086 4.1393 10 7 0.8054 -4.2299 4.1423 11 6 -0.5010 -4.0362 3.5084 12 1 -0.4303 -3.5627 2.5291 13 6 -1.3848 -5.2946 3.5218 14 6 -1.9146 -4.8090 4.8844 15 1 -1.3289 -5.1644 5.7323 16 6 -3.3957 -5.0177 5.0677 17 6 -3.8936 -5.3880 6.3028 18 6 -5.2522 -5.5792 6.4724 19 6 -6.1141 -5.4006 5.4055 20 17 -7.8202 -5.6414 5.6178 21 6 -5.6154 -5.0297 4.1680 22 17 -6.6960 -4.8045 2.8281 23 6 -4.2565 -4.8330 4.0016 24 6 -1.5441 -3.3865 4.4328 25 6 2.9327 -1.4910 3.3938 26 16 2.8425 0.0407 2.5340 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 3.5345 1.7703 0.0321 30 1 1.5614 2.4679 -1.2084 31 1 1.2274 -2.6694 0.8276 32 1 0.8598 -4.4308 5.0897 33 1 -2.1418 -5.3049 2.7376 34 1 -0.8193 -6.2247 3.5779 35 1 -3.2207 -5.5279 7.1360 36 1 -5.6405 -5.8681 7.4378 37 1 -3.8673 -4.5398 3.0379 38 1 -1.1071 -2.7771 5.2240 39 1 -2.3438 -2.8748 3.8973 40 1 3.4213 -1.6434 4.3447 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9750038_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:49:16 Heat of formation + Delta-G solvation = -26.004559 kcal Electronic energy + Delta-G solvation = -30134.670421 eV Core-core repulsion = 25608.468502 eV Total energy + Delta-G solvation = -4526.201919 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.986 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30640 -39.54935 -39.41631 -38.35805 -37.54101 -37.51098 -37.45890 -37.01116 -34.21427 -31.91054 -31.79616 -31.35574 -27.19498 -26.59176 -26.11719 -24.91203 -24.03085 -22.79719 -21.43648 -20.64131 -20.02509 -19.19154 -18.78985 -18.28312 -17.81269 -17.59310 -17.09801 -16.89408 -16.60684 -16.32284 -15.96993 -15.68746 -15.41448 -15.20097 -15.01579 -14.88305 -14.63861 -14.28513 -14.14714 -13.99425 -13.92840 -13.85062 -13.39840 -13.32483 -13.21665 -13.05829 -12.92753 -12.91546 -12.86435 -12.54514 -12.49854 -12.19404 -12.12157 -12.00175 -11.73558 -11.67747 -11.52801 -11.16728 -10.64034 -10.47180 -10.15714 -9.94925 -9.80501 -9.56244 -5.19673 -0.77555 -0.43894 -0.08315 0.09097 0.36422 0.61325 0.83019 1.00677 1.18123 1.22948 1.54531 1.85841 2.06027 2.39778 2.69879 3.22192 3.44403 3.49720 3.60957 3.65984 3.67532 3.73625 3.93458 3.97986 4.08803 4.13149 4.16803 4.25822 4.29215 4.33000 4.40100 4.63785 4.69842 4.81176 4.87887 4.92651 4.94279 4.98787 5.06960 5.08035 5.12731 5.16875 5.41289 5.56856 5.63980 6.09030 6.68697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.030 4.030 3 Si 0.732 3.268 4 C -0.234 4.234 5 C -0.057 4.057 6 C -0.693 4.693 7 S 2.728 3.272 8 O -0.984 6.984 9 O -0.985 6.985 10 N -1.083 6.083 11 C 0.122 3.878 12 H 0.109 0.891 13 C -0.153 4.153 14 C -0.071 4.071 15 H 0.122 0.878 16 C -0.050 4.050 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.055 4.055 20 Cl -0.065 7.065 21 C -0.044 4.044 22 Cl -0.062 7.062 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.083 4.083 26 S 0.187 5.813 27 H 0.398 0.602 28 H 0.120 0.880 29 H -0.268 1.268 30 H -0.272 1.272 31 H 0.153 0.847 32 H 0.431 0.569 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 5.374 5.692 7.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.143 4.143 3 Si 0.635 3.365 4 C -0.352 4.352 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.816 3.184 8 O -0.974 6.974 9 O -0.975 6.975 10 N -0.844 5.844 11 C 0.014 3.986 12 H 0.127 0.873 13 C -0.192 4.192 14 C -0.089 4.089 15 H 0.140 0.860 16 C -0.050 4.050 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.082 4.082 20 Cl -0.036 7.036 21 C -0.071 4.071 22 Cl -0.033 7.033 23 C -0.119 4.119 24 C -0.164 4.164 25 C -0.222 4.222 26 S 0.451 5.549 27 H 0.248 0.752 28 H 0.137 0.863 29 H -0.194 1.194 30 H -0.197 1.197 31 H 0.170 0.830 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.947 6.529 4.514 8.173 hybrid contribution -1.061 -1.585 -0.480 1.967 sum 0.887 4.944 4.034 6.442 Atomic orbital electron populations 1.86519 1.16265 1.82050 1.50426 1.24505 0.85581 1.09372 0.94802 0.94312 0.79211 0.75140 0.87826 1.25150 1.08780 0.98364 1.02883 1.19677 0.98761 0.95234 0.94936 1.29807 1.16836 1.25895 1.06846 1.00761 0.72061 0.73060 0.72494 1.93577 1.85765 1.66866 1.51150 1.93575 1.52796 1.85701 1.65411 1.55031 1.18987 1.86977 1.23431 1.21744 0.81777 0.97702 0.97338 0.87339 1.23719 0.99403 0.98733 0.97348 1.21754 0.89803 0.98148 0.99235 0.86033 1.19956 0.96027 0.96635 0.92420 1.21484 0.94386 0.97356 0.98186 1.21322 0.93223 0.99246 0.98126 1.21040 0.86268 1.06187 0.94700 1.98400 1.12563 1.95258 1.97359 1.20957 0.92391 1.05444 0.88317 1.98405 1.64480 1.95422 1.45012 1.21096 0.89369 1.00137 1.01297 1.23427 0.97949 0.95342 0.99647 1.26217 0.97143 0.95606 1.03274 1.84288 1.49473 1.09758 1.11399 0.75209 0.86322 1.19353 1.19714 0.82977 0.73138 0.88102 0.90626 0.81826 0.82756 0.82736 0.88640 0.87794 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.93 12.88 -148.98 -1.92 0.01 16 2 C -0.03 0.10 2.96 71.24 0.21 0.31 16 3 Si 0.73 -3.02 30.98 68.60 2.13 -0.90 16 4 C -0.23 0.65 5.70 24.59 0.14 0.79 16 5 C -0.06 0.06 9.49 21.22 0.20 0.26 16 6 C -0.69 1.28 5.86 21.22 0.12 1.41 16 7 S 2.73 0.34 5.74 -56.49 -0.32 0.02 16 8 O -0.98 -7.41 17.39 -128.00 -2.23 -9.64 16 9 O -0.98 -5.51 17.64 -128.00 -2.26 -7.77 16 10 N -1.08 7.99 5.73 -167.21 -0.96 7.03 16 11 C 0.12 -1.02 4.42 45.52 0.20 -0.81 16 12 H 0.11 -0.93 7.96 -2.38 -0.02 -0.95 16 13 C -0.15 1.09 7.27 31.21 0.23 1.31 16 14 C -0.07 0.69 3.81 -10.92 -0.04 0.65 16 15 H 0.12 -1.54 8.08 -2.39 -0.02 -1.56 16 16 C -0.05 0.30 5.29 -19.86 -0.11 0.20 16 17 C -0.10 0.60 9.71 22.27 0.22 0.82 16 18 C -0.10 0.28 9.83 22.29 0.22 0.50 16 19 C -0.05 -0.09 6.32 22.35 0.14 0.05 16 20 Cl -0.06 -0.25 27.96 -2.72 -0.08 -0.33 16 21 C -0.04 -0.06 6.32 22.34 0.14 0.08 16 22 Cl -0.06 -0.22 27.96 -2.72 -0.08 -0.29 16 23 C -0.10 0.31 8.39 22.29 0.19 0.50 16 24 C -0.12 1.40 7.32 31.12 0.23 1.63 16 25 C -0.08 0.37 10.70 66.72 0.71 1.09 16 26 S 0.19 -1.01 20.60 -56.49 -1.16 -2.17 16 27 H 0.40 -4.79 8.70 -74.06 -0.64 -5.43 16 28 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H -0.27 -0.17 7.11 99.48 0.71 0.54 16 30 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 31 H 0.15 -0.11 7.96 -2.91 -0.02 -0.13 16 32 H 0.43 -5.01 8.81 -96.74 -0.85 -5.86 16 33 H 0.10 -0.75 6.34 -2.38 -0.02 -0.77 16 34 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.16 -1.90 8.05 -2.91 -0.02 -1.92 16 36 H 0.15 -0.89 8.06 -2.91 -0.02 -0.91 16 37 H 0.16 -0.94 6.68 -2.91 -0.02 -0.96 16 38 H 0.10 -1.25 8.14 -2.38 -0.02 -1.27 16 39 H 0.10 -1.20 7.72 -2.39 -0.02 -1.22 16 40 H 0.20 -1.76 8.00 -2.91 -0.02 -1.78 16 Total: 0.00 -23.68 395.10 -4.39 -28.08 By element: Atomic # 1 Polarization: -22.51 SS G_CDS: -0.32 Total: -22.83 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 2.80 Total: 8.78 kcal Atomic # 7 Polarization: 7.99 SS G_CDS: -0.96 Total: 7.03 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -6.40 Total: -17.39 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.13 Total: -0.90 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -1.49 Total: -2.15 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.15 Total: -0.62 kcal Total: -23.68 -4.39 -28.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9750038_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.074 kcal (2) G-P(sol) polarization free energy of solvation -23.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds