Wall clock time and date at job start Mon Mar 8 2021 14:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99989 * 2 1 4 4 H 1.08992 * 112.85113 * 341.19824 * 3 2 1 5 5 C 1.53787 * 113.68887 * 112.46200 * 3 2 1 6 6 C 1.53785 * 87.07984 * 139.99147 * 5 3 2 7 7 H 1.09001 * 113.60981 * 89.11713 * 6 5 3 8 8 N 1.46498 * 113.61262 * 220.02055 * 6 5 3 9 9 S 1.65607 * 119.99644 * 223.04364 * 8 6 5 10 10 O 1.42101 * 106.40093 * 180.84460 * 9 8 6 11 11 O 1.42099 * 106.40218 * 313.76454 * 9 8 6 12 12 C 1.76200 * 107.21550 * 67.30721 * 9 8 6 13 13 C 1.33393 * 122.53426 * 163.17216 * 12 9 8 14 14 C 1.50693 * 125.20817 * 0.02562 * 13 12 9 15 15 O 1.42901 * 109.46940 * 45.74916 * 14 13 12 16 16 Si 1.86300 * 109.47535 * 165.75354 * 14 13 12 17 17 S 1.75892 * 109.59039 * 179.90327 * 13 12 9 18 18 C 1.75890 * 90.96855 * 0.30070 * 17 13 12 19 19 C 1.33386 * 109.59462 * 359.82929 * 18 17 13 20 20 C 1.53777 * 113.61289 * 209.99674 * 3 2 1 21 21 H 1.09003 * 109.47248 * 299.99755 * 1 2 3 22 22 H 1.08999 * 109.47126 * 60.00115 * 1 2 3 23 23 H 1.08997 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.08995 * 113.61890 * 254.54239 * 5 3 2 25 25 H 1.09006 * 113.61027 * 25.44868 * 5 3 2 26 26 H 0.96993 * 120.00447 * 43.04382 * 8 6 5 27 27 H 1.09004 * 109.47204 * 285.75416 * 14 13 12 28 28 H 0.96702 * 113.99741 * 66.04514 * 15 14 13 29 29 H 1.48501 * 109.99707 * 58.68056 * 16 14 13 30 30 H 1.48491 * 109.99996 * 179.97438 * 16 14 13 31 31 H 1.07995 * 125.20211 * 179.79497 * 18 17 13 32 32 H 1.07999 * 122.54139 * 180.02562 * 19 18 17 33 33 H 1.08996 * 113.61586 * 334.48622 * 20 3 2 34 34 H 1.08998 * 113.61097 * 105.39032 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3237 5 6 2.7531 1.6510 1.3014 6 6 3.8220 2.3199 0.4211 7 1 3.6208 3.3706 0.2125 8 7 5.1929 2.0818 0.8797 9 16 6.2880 3.3240 0.8960 10 8 7.5112 2.7744 1.3661 11 8 6.1632 3.9854 -0.3554 12 6 5.7553 4.4727 2.1213 13 6 6.5600 5.4105 2.6236 14 6 7.9993 5.6217 2.2306 15 8 8.1148 5.5832 0.8068 16 14 8.5772 7.2787 2.8560 17 16 5.6830 6.3651 3.8125 18 6 4.2326 5.4028 3.5594 19 6 4.4718 4.4666 2.6398 20 6 3.3756 1.3718 -0.7044 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 2.2132 2.3503 1.9399 25 1 3.1169 0.7770 1.8418 26 1 5.4591 1.1967 1.1737 27 1 8.6143 4.8343 2.6664 28 1 7.6678 6.3128 0.3561 29 1 8.4323 7.3430 4.3325 30 1 9.9955 7.4988 2.4753 31 1 3.2925 5.5473 4.0707 32 1 3.7209 3.7579 2.3233 33 1 3.9094 0.4216 -0.7124 34 1 3.3382 1.8457 -1.6853 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9984034_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:10:46 Heat of formation + Delta-G solvation = -75.448197 kcal Electronic energy + Delta-G solvation = -21803.276277 eV Core-core repulsion = 18344.289895 eV Total energy + Delta-G solvation = -3458.986382 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74092 -39.65429 -38.04219 -37.75168 -37.43907 -36.59463 -33.71784 -31.85643 -27.86447 -27.56966 -26.87863 -24.85862 -24.44068 -21.73754 -21.30614 -20.31294 -19.28574 -18.37679 -18.23515 -17.82633 -17.16867 -16.92688 -16.60148 -16.28849 -16.09385 -15.72143 -15.45471 -15.26729 -15.07848 -14.34108 -14.09511 -14.05235 -13.93395 -13.54752 -13.32270 -12.98172 -12.90564 -12.80025 -12.76530 -12.56628 -12.39117 -12.11791 -12.02471 -11.82276 -11.58330 -10.99093 -10.58388 -10.52887 -10.21545 -9.85967 -5.26393 -0.62737 -0.52885 0.28994 0.57727 0.99005 1.08455 1.43722 1.77829 1.97724 2.78051 2.80620 3.14725 3.29406 3.32669 3.36778 3.62583 3.65630 3.70375 3.92994 3.98702 4.07547 4.27702 4.30558 4.38932 4.42590 4.48459 4.63236 4.67746 4.71248 4.76683 4.84619 4.92193 5.02444 5.21425 5.85875 6.17367 6.31692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.062 3.938 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.123 3.877 7 H 0.121 0.879 8 N -1.105 6.105 9 S 2.716 3.284 10 O -0.948 6.948 11 O -0.940 6.940 12 C -0.661 4.661 13 C -0.098 4.098 14 C -0.072 4.072 15 O -0.529 6.529 16 Si 0.672 3.328 17 S 0.158 5.842 18 C -0.209 4.209 19 C -0.091 4.091 20 C -0.145 4.145 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.422 0.578 27 H 0.147 0.853 28 H 0.389 0.611 29 H -0.232 1.232 30 H -0.224 1.224 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 2.898 1.795 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.003 3.997 4 H 0.112 0.888 5 C -0.209 4.209 6 C 0.015 3.985 7 H 0.139 0.861 8 N -0.864 5.864 9 S 2.801 3.199 10 O -0.938 6.938 11 O -0.929 6.929 12 C -0.759 4.759 13 C -0.219 4.219 14 C -0.184 4.184 15 O -0.335 6.335 16 Si 0.569 3.431 17 S 0.421 5.579 18 C -0.344 4.344 19 C -0.119 4.119 20 C -0.185 4.185 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.257 0.743 27 H 0.164 0.836 28 H 0.238 0.762 29 H -0.156 1.156 30 H -0.147 1.147 31 H 0.193 0.807 32 H 0.170 0.830 33 H 0.119 0.881 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.979 4.165 2.840 6.422 hybrid contribution -1.238 -1.705 0.054 2.107 sum -5.217 2.460 2.894 6.453 Atomic orbital electron populations 1.22837 0.80784 1.03116 1.00103 1.87963 1.19955 1.26768 1.94518 1.23500 0.94017 0.85964 0.96226 0.88819 1.24081 0.97094 1.01819 0.97875 1.22083 0.80183 1.00153 0.96058 0.86120 1.55600 1.23766 1.25908 1.81096 1.01597 0.72041 0.72534 0.73727 1.93591 1.40480 1.77685 1.82090 1.93596 1.85658 1.74845 1.38839 1.29939 1.02942 1.18774 1.24270 1.24999 1.00076 0.97356 0.99492 1.25109 0.91677 1.14571 0.87085 1.86593 1.77848 1.53933 1.15156 0.94852 0.86165 0.79520 0.82566 1.84465 1.03049 1.32350 1.38012 1.25892 1.02533 1.01346 1.04668 1.19834 0.94642 1.00121 0.97319 1.23702 0.95095 1.00913 0.98771 0.93892 0.93756 0.89470 0.90352 0.87993 0.74266 0.83631 0.76200 1.15561 1.14672 0.80740 0.83025 0.88084 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 101.05 1.10 1.05 16 2 O -0.37 -0.26 10.72 -35.23 -0.38 -0.64 16 3 C 0.06 -0.09 4.31 -25.92 -0.11 -0.20 16 4 H 0.09 -0.29 7.87 -51.93 -0.41 -0.70 16 5 C -0.17 0.42 7.09 -25.91 -0.18 0.24 16 6 C 0.12 -0.20 2.71 -67.11 -0.18 -0.39 16 7 H 0.12 -0.33 7.51 -51.93 -0.39 -0.72 16 8 N -1.10 0.54 5.56 -4.19 -0.02 0.51 16 9 S 2.72 7.30 4.26 -107.50 -0.46 6.84 16 10 O -0.95 -5.55 17.00 -59.25 -1.01 -6.56 16 11 O -0.94 -4.55 16.86 -63.45 -1.07 -5.62 16 12 C -0.66 -0.89 5.72 -41.21 -0.24 -1.12 16 13 C -0.10 -0.11 5.78 -36.00 -0.21 -0.32 16 14 C -0.07 -0.08 2.16 36.00 0.08 0.00 16 15 O -0.53 -1.04 10.45 -52.12 -0.54 -1.58 16 16 Si 0.67 -0.75 30.97 -169.99 -5.27 -6.02 16 17 S 0.16 -0.11 20.71 -107.50 -2.23 -2.34 16 18 C -0.21 0.28 11.23 29.04 0.33 0.60 16 19 C -0.09 0.06 9.39 -41.21 -0.39 -0.33 16 20 C -0.15 0.16 7.71 -25.92 -0.20 -0.04 16 21 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 22 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 24 H 0.08 -0.31 7.46 -51.93 -0.39 -0.70 16 25 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 26 H 0.42 -0.81 8.96 -34.47 -0.31 -1.12 16 27 H 0.15 0.26 7.85 -51.93 -0.41 -0.15 16 28 H 0.39 -0.81 8.59 45.56 0.39 -0.42 16 29 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 30 H -0.22 -0.27 7.11 56.52 0.40 0.13 16 31 H 0.18 -0.67 8.06 -52.49 -0.42 -1.10 16 32 H 0.15 -0.44 4.57 -52.49 -0.24 -0.68 16 33 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 307.41 15.07 4.63 4.63 Total: 0.00 -9.43 307.41 -10.26 -19.69 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -3.91 Total: -8.41 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.01 Total: -0.52 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.02 Total: 0.51 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -3.00 Total: -14.39 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -5.27 Total: -6.02 kcal Atomic # 16 Polarization: 7.19 SS G_CDS: -2.68 Total: 4.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -9.43 -10.26 -19.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9984034_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.761 kcal (2) G-P(sol) polarization free energy of solvation -9.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds