Wall clock time and date at job start Mon Mar 8 2021 14:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99989 * 2 1 4 4 H 1.08992 * 112.85113 * 341.19824 * 3 2 1 5 5 C 1.53787 * 113.68887 * 112.46200 * 3 2 1 6 6 C 1.53785 * 87.07984 * 139.99147 * 5 3 2 7 7 H 1.09001 * 113.60981 * 89.11713 * 6 5 3 8 8 N 1.46498 * 113.61262 * 220.02055 * 6 5 3 9 9 S 1.65607 * 119.99644 * 223.04364 * 8 6 5 10 10 O 1.42101 * 106.40093 * 180.84460 * 9 8 6 11 11 O 1.42099 * 106.40218 * 313.76454 * 9 8 6 12 12 C 1.76200 * 107.21550 * 67.30721 * 9 8 6 13 13 C 1.33393 * 122.53426 * 163.17216 * 12 9 8 14 14 C 1.50693 * 125.20817 * 0.02562 * 13 12 9 15 15 O 1.42901 * 109.46940 * 45.74916 * 14 13 12 16 16 Si 1.86300 * 109.47535 * 165.75354 * 14 13 12 17 17 S 1.75892 * 109.59039 * 179.90327 * 13 12 9 18 18 C 1.75890 * 90.96855 * 0.30070 * 17 13 12 19 19 C 1.33386 * 109.59462 * 359.82929 * 18 17 13 20 20 C 1.53777 * 113.61289 * 209.99674 * 3 2 1 21 21 H 1.09003 * 109.47248 * 299.99755 * 1 2 3 22 22 H 1.08999 * 109.47126 * 60.00115 * 1 2 3 23 23 H 1.08997 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.08995 * 113.61890 * 254.54239 * 5 3 2 25 25 H 1.09006 * 113.61027 * 25.44868 * 5 3 2 26 26 H 0.96993 * 120.00447 * 43.04382 * 8 6 5 27 27 H 1.09004 * 109.47204 * 285.75416 * 14 13 12 28 28 H 0.96702 * 113.99741 * 66.04514 * 15 14 13 29 29 H 1.48501 * 109.99707 * 58.68056 * 16 14 13 30 30 H 1.48491 * 109.99996 * 179.97438 * 16 14 13 31 31 H 1.07995 * 125.20211 * 179.79497 * 18 17 13 32 32 H 1.07999 * 122.54139 * 180.02562 * 19 18 17 33 33 H 1.08996 * 113.61586 * 334.48622 * 20 3 2 34 34 H 1.08998 * 113.61097 * 105.39032 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3237 5 6 2.7531 1.6510 1.3014 6 6 3.8220 2.3199 0.4211 7 1 3.6208 3.3706 0.2125 8 7 5.1929 2.0818 0.8797 9 16 6.2880 3.3240 0.8960 10 8 7.5112 2.7744 1.3661 11 8 6.1632 3.9854 -0.3554 12 6 5.7553 4.4727 2.1213 13 6 6.5600 5.4105 2.6236 14 6 7.9993 5.6217 2.2306 15 8 8.1148 5.5832 0.8068 16 14 8.5772 7.2787 2.8560 17 16 5.6830 6.3651 3.8125 18 6 4.2326 5.4028 3.5594 19 6 4.4718 4.4666 2.6398 20 6 3.3756 1.3718 -0.7044 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 2.2132 2.3503 1.9399 25 1 3.1169 0.7770 1.8418 26 1 5.4591 1.1967 1.1737 27 1 8.6143 4.8343 2.6664 28 1 7.6678 6.3128 0.3561 29 1 8.4323 7.3430 4.3325 30 1 9.9955 7.4988 2.4753 31 1 3.2925 5.5473 4.0707 32 1 3.7209 3.7579 2.3233 33 1 3.9094 0.4216 -0.7124 34 1 3.3382 1.8457 -1.6853 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9984034_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:10:46 Heat of formation + Delta-G solvation = -79.502416 kcal Electronic energy + Delta-G solvation = -21803.452081 eV Core-core repulsion = 18344.289895 eV Total energy + Delta-G solvation = -3459.162186 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61892 -39.65321 -38.28550 -37.80110 -37.40846 -36.87949 -33.69496 -31.83612 -27.71087 -27.57533 -26.72899 -24.76336 -24.43188 -21.74625 -21.19588 -20.39299 -19.30002 -18.46707 -18.21473 -17.84506 -17.14398 -16.93265 -16.64469 -16.33412 -16.01271 -15.70898 -15.47468 -15.18162 -15.04499 -14.36605 -14.09811 -13.98381 -13.85350 -13.45241 -13.39510 -13.23488 -13.13752 -12.82953 -12.74724 -12.63414 -12.29193 -12.14470 -11.90003 -11.71107 -11.59972 -11.01446 -10.52259 -10.41121 -10.18772 -9.78878 -5.19813 -0.77055 -0.53168 0.33052 0.61948 1.03288 1.13599 1.48464 1.80429 1.91757 2.65261 2.92774 3.15204 3.30988 3.46459 3.49726 3.56609 3.79372 3.84386 4.02833 4.11777 4.15971 4.27371 4.42140 4.58104 4.59282 4.61085 4.78613 4.81723 4.86484 4.90492 5.01883 5.03042 5.12264 5.34244 5.92614 6.32937 6.43013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.058 3.942 4 H 0.113 0.887 5 C -0.161 4.161 6 C 0.119 3.881 7 H 0.134 0.866 8 N -1.097 6.097 9 S 2.724 3.276 10 O -0.990 6.990 11 O -0.969 6.969 12 C -0.668 4.668 13 C -0.120 4.120 14 C -0.094 4.094 15 O -0.551 6.551 16 Si 0.759 3.241 17 S 0.180 5.820 18 C -0.202 4.202 19 C -0.102 4.102 20 C -0.155 4.155 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.428 0.572 27 H 0.128 0.872 28 H 0.403 0.597 29 H -0.244 1.244 30 H -0.260 1.260 31 H 0.205 0.795 32 H 0.173 0.827 33 H 0.090 0.910 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 3.860 2.814 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.000 4.000 4 H 0.131 0.869 5 C -0.200 4.200 6 C 0.011 3.989 7 H 0.152 0.848 8 N -0.858 5.858 9 S 2.813 3.187 10 O -0.980 6.980 11 O -0.959 6.959 12 C -0.769 4.769 13 C -0.241 4.241 14 C -0.204 4.204 15 O -0.360 6.360 16 Si 0.658 3.342 17 S 0.443 5.557 18 C -0.338 4.338 19 C -0.129 4.129 20 C -0.195 4.195 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.265 0.735 27 H 0.146 0.854 28 H 0.254 0.746 29 H -0.169 1.169 30 H -0.185 1.185 31 H 0.222 0.778 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.908 5.092 3.828 8.688 hybrid contribution -0.679 -2.040 -0.261 2.166 sum -6.587 3.052 3.567 8.089 Atomic orbital electron populations 1.22955 0.79825 1.03524 1.00993 1.87925 1.21190 1.28117 1.94698 1.23655 0.93933 0.85756 0.96663 0.86925 1.24031 0.96365 1.01932 0.97672 1.22304 0.79443 1.00888 0.96220 0.84832 1.55354 1.23938 1.25408 1.81089 1.00910 0.71715 0.72687 0.73430 1.93532 1.43247 1.78600 1.82640 1.93550 1.86115 1.75572 1.40647 1.29765 1.04210 1.18614 1.24320 1.25106 1.00174 0.98212 1.00575 1.25440 0.92082 1.16107 0.86745 1.86551 1.78333 1.55142 1.15970 0.93872 0.83159 0.76861 0.80349 1.84370 1.03046 1.31656 1.36588 1.26305 1.03197 1.00279 1.03985 1.20047 0.94164 1.01076 0.97656 1.23768 0.95873 1.00646 0.99183 0.92785 0.93037 0.89432 0.87990 0.88549 0.73546 0.85450 0.74598 1.16871 1.18527 0.77769 0.80962 0.89130 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.40 -0.49 10.72 -148.98 -1.60 -2.08 16 3 C 0.06 -0.21 4.31 31.12 0.13 -0.08 16 4 H 0.11 -0.88 7.87 -2.39 -0.02 -0.90 16 5 C -0.16 0.99 7.09 31.12 0.22 1.21 16 6 C 0.12 -0.43 2.71 45.52 0.12 -0.31 16 7 H 0.13 -0.84 7.51 -2.39 -0.02 -0.86 16 8 N -1.10 0.26 5.56 -167.18 -0.93 -0.67 16 9 S 2.72 18.68 4.26 -56.49 -0.24 18.43 16 10 O -0.99 -14.10 17.00 -126.02 -2.14 -16.24 16 11 O -0.97 -10.98 16.86 -122.00 -2.06 -13.03 16 12 C -0.67 -1.98 5.72 21.22 0.12 -1.86 16 13 C -0.12 -0.32 5.78 24.59 0.14 -0.18 16 14 C -0.09 -0.35 2.16 71.23 0.15 -0.20 16 15 O -0.55 -3.25 10.45 -132.83 -1.39 -4.64 16 16 Si 0.76 -1.36 30.97 68.60 2.12 0.76 16 17 S 0.18 -0.46 20.71 -56.49 -1.17 -1.63 16 18 C -0.20 0.99 11.23 66.72 0.75 1.74 16 19 C -0.10 0.27 9.39 21.21 0.20 0.47 16 20 C -0.16 0.27 7.71 31.12 0.24 0.51 16 21 H 0.05 -0.33 8.14 -2.39 -0.02 -0.35 16 22 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H 0.10 -1.09 7.46 -2.39 -0.02 -1.11 16 25 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 26 H 0.43 -1.15 8.96 -96.75 -0.87 -2.02 16 27 H 0.13 0.81 7.85 -2.38 -0.02 0.79 16 28 H 0.40 -1.03 8.59 -74.06 -0.64 -1.67 16 29 H -0.24 0.00 7.11 99.48 0.71 0.71 16 30 H -0.26 -0.98 7.11 99.48 0.71 -0.27 16 31 H 0.21 -2.32 8.06 -2.91 -0.02 -2.34 16 32 H 0.17 -1.34 4.57 -2.91 -0.01 -1.36 16 33 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -22.99 307.41 -4.40 -27.39 By element: Atomic # 1 Polarization: -10.44 SS G_CDS: -0.32 Total: -10.76 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 3.31 Total: 2.46 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -0.93 Total: -0.67 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -7.18 Total: -35.99 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.12 Total: 0.76 kcal Atomic # 16 Polarization: 18.22 SS G_CDS: -1.41 Total: 16.81 kcal Total: -22.99 -4.40 -27.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9984034_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.112 kcal (2) G-P(sol) polarization free energy of solvation -22.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds