Wall clock time and date at job start Mon Mar 8 2021 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 N 1.30298 * 125.49396 * 210.30780 * 7 2 1 9 9 C 1.35078 * 109.20145 * 179.97438 * 8 7 2 10 10 C 1.47336 * 126.15255 * 180.02562 * 9 8 7 11 11 C 1.34298 * 120.00158 * 359.97331 * 10 9 8 12 12 C 1.47369 * 119.99757 * 179.97438 * 11 10 9 13 13 C 1.39735 * 120.15873 * 180.27582 * 12 11 10 14 14 C 1.37931 * 119.83637 * 179.97438 * 13 12 11 15 Xx 1.80995 * 119.92052 * 180.02562 * 14 13 12 16 15 F 9.20878 * 141.26628 * 297.59033 * 5 1 2 17 16 F 1.61006 * 90.00034 * 134.99558 * 15 14 13 18 17 F 1.60999 * 89.99999 * 315.00125 * 15 14 13 19 18 F 1.60991 * 90.00181 * 224.99791 * 15 14 13 20 19 F 1.61001 * 90.00120 * 45.00014 * 15 14 13 21 20 C 1.38362 * 120.15915 * 359.97437 * 14 13 12 22 21 C 1.38396 * 120.33422 * 0.02643 * 21 14 13 23 22 C 1.37902 * 120.15830 * 359.74064 * 22 21 14 24 23 C 1.36347 * 107.69563 * 359.97438 * 9 8 7 25 24 N 1.35711 * 125.49881 * 29.99409 * 7 2 1 26 25 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 27 26 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 28 27 H 1.08003 * 119.99765 * 179.97438 * 10 9 8 29 28 H 1.07993 * 119.99991 * 0.02562 * 11 10 9 30 29 H 1.08001 * 120.07965 * 359.95688 * 13 12 11 31 30 H 1.08005 * 119.83331 * 180.02562 * 21 14 13 32 31 H 1.07997 * 119.92711 * 179.97438 * 22 21 14 33 32 H 1.08005 * 120.08373 * 179.97438 * 23 22 21 34 33 H 1.08000 * 126.66449 * 179.97438 * 24 9 8 35 34 H 0.97002 * 126.28615 * 0.26157 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 7 3.0470 -0.4509 1.8514 9 6 3.1704 -1.2819 2.9092 10 6 4.2904 -1.3104 3.8661 11 6 5.3154 -0.4541 3.7259 12 6 6.4353 -0.4823 4.6834 13 6 7.5007 0.4111 4.5441 14 6 8.5452 0.3792 5.4444 15 9 11.1556 2.5608 5.1076 16 9 9.8759 1.8386 6.8471 17 9 9.9760 1.2329 3.6861 18 9 10.9656 0.3350 5.5296 19 9 8.8864 2.7366 5.0035 20 6 8.5393 -0.5341 6.4838 21 6 7.4876 -1.4220 6.6282 22 6 6.4341 -1.3987 5.7387 23 6 2.0716 -2.0888 2.9327 24 7 1.2918 -1.7198 1.8738 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5139 -0.8900 27 1 4.2870 -2.0200 4.6803 28 1 5.3185 0.2557 2.9120 29 1 7.5064 1.1245 3.7333 30 1 9.3597 -0.5542 7.1860 31 1 7.4900 -2.1323 7.4417 32 1 5.6142 -2.0924 5.8522 33 1 1.8579 -2.8666 3.6509 34 1 0.4401 -2.1111 1.6242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_13075132_13158274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:10:25 Heat of formation + Delta-G solvation = 430.747961 kcal Electronic energy + Delta-G solvation = -26239.144398 eV Core-core repulsion = 21309.036502 eV Total energy + Delta-G solvation = -4930.107896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 16.65 seconds Orbital eigenvalues (eV) -44.95283 -41.60584 -41.43891 -40.45296 -40.42264 -40.12377 -40.10456 -38.54781 -37.50319 -35.01737 -33.52023 -32.64942 -30.90063 -28.16849 -25.86607 -24.37583 -23.31256 -23.14777 -21.57529 -19.99583 -18.71757 -18.33278 -17.80518 -17.65039 -17.21666 -16.59820 -16.27794 -15.97019 -15.78386 -15.42214 -15.08640 -14.86902 -14.76670 -13.88773 -13.25313 -13.16302 -13.09198 -12.75037 -12.32442 -12.27894 -12.09958 -12.08118 -11.92752 -11.39887 -11.28153 -11.17159 -11.06426 -10.84919 -10.64398 -10.54124 -10.29805 -10.10261 -10.06651 -9.77072 -9.54698 -9.46481 -9.36686 -8.42227 -4.84730 -2.91759 -1.67763 -1.28004 -0.35375 -0.31265 -0.04066 0.45079 0.83555 1.08445 1.34627 1.43226 1.52179 1.82120 1.83061 2.02477 2.23689 2.57888 2.60972 2.78256 2.92144 2.99211 3.03833 3.21047 3.37798 3.48330 3.55372 3.89229 3.94833 4.03038 4.15697 4.24058 4.37026 4.62858 4.97026 5.05869 5.08929 5.43188 6.29138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.036 4.036 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.282 1.282 7 C 0.341 3.659 8 N -0.533 5.533 9 C 0.058 3.942 10 C 0.144 3.856 11 C 0.219 3.781 12 C -0.076 4.076 13 C -0.057 4.057 14 C 0.369 3.631 15 F -0.323 7.323 16 F -0.599 7.599 17 F -0.560 7.560 18 F -0.558 7.558 19 F -0.599 7.599 20 C -0.004 4.004 21 C -0.096 4.096 22 C 0.062 3.938 23 C 0.376 3.624 24 N -0.530 5.530 25 H 0.406 0.594 26 H 0.187 0.813 27 H 0.301 0.699 28 H 0.184 0.816 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.247 0.753 32 H 0.310 0.690 33 H 0.344 0.656 34 H 0.484 0.516 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -67.750 -38.918 -11.441 78.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.150 4.150 3 Si 0.804 3.196 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.207 1.207 7 C 0.079 3.921 8 N -0.253 5.253 9 C -0.054 4.054 10 C 0.126 3.874 11 C 0.201 3.799 12 C -0.076 4.076 13 C -0.076 4.076 14 C 0.359 3.641 15 F -0.323 7.323 16 F -0.596 7.596 17 F -0.558 7.558 18 F -0.555 7.555 19 F -0.596 7.596 20 C -0.022 4.022 21 C -0.112 4.112 22 C 0.047 3.953 23 C 0.212 3.788 24 N -0.132 5.132 25 H 0.258 0.742 26 H 0.204 0.796 27 H 0.316 0.684 28 H 0.201 0.799 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.263 0.737 32 H 0.325 0.675 33 H 0.358 0.642 34 H 0.336 0.664 Dipole moment (debyes) X Y Z Total from point charges -66.830 -37.621 -12.360 77.682 hybrid contribution 2.277 2.358 -0.222 3.286 sum -64.553 -35.263 -12.582 74.625 Atomic orbital electron populations 1.86751 1.14179 1.80960 1.51534 1.24662 0.86551 1.08630 0.95133 0.85048 0.80220 0.73494 0.80822 1.17646 1.18823 1.20707 1.25476 0.86564 0.85425 0.94603 1.71147 1.18429 1.26971 1.08771 1.21401 0.96575 0.93551 0.93903 1.24623 0.81369 0.89131 0.92290 1.24774 0.83013 0.85346 0.86752 1.19560 0.91878 0.96227 0.99955 1.22535 0.89177 0.98164 0.97686 1.24877 0.66655 0.75570 0.96988 1.99999 1.90791 1.62938 1.78591 1.99887 1.86943 1.95301 1.77455 1.99877 1.98317 1.82488 1.75080 1.99880 1.91295 1.66159 1.98186 1.99882 1.79554 1.83014 1.97118 1.23384 1.00562 0.86714 0.91576 1.22501 0.88207 0.96335 1.04197 1.23797 0.97962 0.90239 0.83335 1.27395 0.81066 0.87842 0.82470 1.45114 1.22912 1.25078 1.20138 0.74220 0.79605 0.68429 0.79861 0.83216 0.84746 0.73723 0.67531 0.64166 0.66380 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 475. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 20.59 12.76 -148.98 -1.90 18.69 16 2 C -0.04 1.43 3.08 71.23 0.22 1.65 16 3 Si 0.98 -24.26 27.54 68.60 1.89 -22.37 16 4 H -0.25 5.89 7.11 99.48 0.71 6.59 16 5 H -0.26 4.71 7.11 99.48 0.71 5.42 16 6 H -0.28 4.43 7.11 99.48 0.71 5.14 16 7 C 0.34 -16.24 7.02 137.97 0.97 -15.27 16 8 N -0.53 23.93 9.42 -177.31 -1.67 22.26 16 9 C 0.06 -3.45 6.84 40.60 0.28 -3.17 16 10 C 0.14 -8.87 9.51 23.77 0.23 -8.65 16 11 C 0.22 -9.28 9.54 23.78 0.23 -9.06 16 12 C -0.08 1.78 5.87 -20.14 -0.12 1.66 16 13 C -0.06 -0.71 8.36 22.56 0.19 -0.52 16 14 C 0.37 13.56 4.82 22.23 0.11 13.66 16 15 F -0.32 -31.70 16.65 44.97 0.75 -30.95 16 16 F -0.60 -50.13 15.30 44.97 0.69 -49.44 16 17 F -0.56 -44.66 15.30 44.97 0.69 -43.97 16 18 F -0.56 -45.94 15.29 44.97 0.69 -45.25 16 19 F -0.60 -48.53 15.31 44.97 0.69 -47.84 16 20 C 0.00 -0.07 8.62 22.34 0.19 0.12 16 21 C -0.10 1.56 10.03 22.23 0.22 1.78 16 22 C 0.06 -2.18 9.41 22.56 0.21 -1.97 16 23 C 0.38 -26.24 12.01 83.51 1.00 -25.24 16 24 N -0.53 32.07 6.03 -184.95 -1.12 30.95 16 25 H 0.41 -18.71 8.70 -74.06 -0.64 -19.35 16 26 H 0.19 -7.70 7.96 -2.39 -0.02 -7.72 16 27 H 0.30 -23.90 6.07 -2.91 -0.02 -23.92 16 28 H 0.18 -6.88 7.73 -2.91 -0.02 -6.90 16 29 H 0.15 3.21 7.39 -2.91 -0.02 3.18 16 30 H 0.13 4.11 7.38 -2.91 -0.02 4.09 16 31 H 0.25 -7.02 8.06 -2.91 -0.02 -7.05 16 32 H 0.31 -19.54 6.17 -2.91 -0.02 -19.56 16 33 H 0.34 -29.49 8.06 -2.91 -0.02 -29.51 16 34 H 0.48 -30.91 8.93 -92.71 -0.83 -31.74 16 Total: 0.00 -339.15 326.47 4.91 -334.24 By element: Atomic # 1 Polarization: -121.81 SS G_CDS: 0.48 Total: -121.33 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 3.73 Total: -44.99 kcal Atomic # 7 Polarization: 56.00 SS G_CDS: -2.79 Total: 53.21 kcal Atomic # 8 Polarization: 20.59 SS G_CDS: -1.90 Total: 18.69 kcal Atomic # 9 Polarization: -220.95 SS G_CDS: 3.50 Total: -217.45 kcal Atomic # 14 Polarization: -24.26 SS G_CDS: 1.89 Total: -22.37 kcal Total: -339.15 4.91 -334.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_13075132_13158274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 764.987 kcal (2) G-P(sol) polarization free energy of solvation -339.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 425.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -334.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 430.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.65 seconds