Wall clock time and date at job start Mon Mar 8 2021 13:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 N 1.30305 * 125.49320 * 149.69668 * 4 2 1 6 6 C 1.35068 * 109.20566 * 179.86592 * 5 4 2 7 7 C 1.47382 * 126.14910 * 180.15524 * 6 5 4 8 8 C 1.34236 * 119.99839 * 0.28160 * 7 6 5 9 9 C 1.47456 * 120.00023 * 179.97438 * 8 7 6 10 10 N 1.31920 * 126.08448 * 0.02562 * 9 8 7 11 11 N 1.40065 * 108.06448 * 180.02562 * 10 9 8 12 12 C 1.46504 * 125.89306 * 180.02562 * 11 10 9 13 13 H 1.09006 * 112.84979 * 36.17960 * 12 11 10 14 14 C 1.53786 * 113.61288 * 167.47956 * 12 11 10 15 15 C 1.53785 * 87.07877 * 89.11921 * 14 12 11 16 16 H 1.09006 * 113.61037 * 270.88267 * 15 14 12 17 17 C 1.50697 * 113.61256 * 139.98433 * 15 14 12 18 18 O 1.21919 * 120.00141 * 52.49913 * 17 15 14 19 19 O 1.21926 * 119.99631 * 232.49957 * 17 15 14 20 20 C 1.53779 * 87.08384 * 25.43057 * 15 14 12 21 21 C 1.35085 * 108.20978 * 0.02562 * 11 10 9 22 22 C 1.34989 * 108.06219 * 359.72043 * 21 11 10 23 23 C 1.36311 * 107.70302 * 0.39377 * 6 5 4 24 24 N 1.35697 * 125.49874 * 329.99715 * 4 2 1 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.07999 * 119.99979 * 180.27622 * 7 6 5 30 30 H 1.07999 * 120.00181 * 359.97438 * 8 7 6 31 31 H 1.08998 * 113.61265 * 203.66769 * 14 12 11 32 32 H 1.08997 * 113.61443 * 334.56933 * 14 12 11 33 33 H 1.08993 * 113.61458 * 220.02200 * 20 15 14 34 34 H 1.09003 * 113.61233 * 89.11228 * 20 15 14 35 35 H 1.08003 * 125.96734 * 179.97438 * 21 11 10 36 36 H 1.08001 * 126.08554 * 180.27767 * 22 21 11 37 37 H 1.08003 * 126.66689 * 179.76550 * 23 6 5 38 38 H 0.97001 * 126.29232 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 7 3.0471 -0.4509 -1.8514 6 6 3.1724 -1.2841 -2.9070 7 6 4.2952 -1.3158 -3.8612 8 6 5.3227 -0.4641 -3.7170 9 6 6.4463 -0.4962 -4.6713 10 7 6.5650 -1.3072 -5.7050 11 7 7.7726 -1.0137 -6.3509 12 6 8.2914 -1.6820 -7.5470 13 1 7.5070 -1.9567 -8.2523 14 6 9.4773 -0.9493 -8.1965 15 6 10.3905 -1.7745 -7.2744 16 1 10.5784 -1.3025 -6.3100 17 6 11.6500 -2.2568 -7.9467 18 8 12.3721 -1.4652 -8.5284 19 8 11.9469 -3.4388 -7.9089 20 6 9.2701 -2.8271 -7.2373 21 6 8.3764 -0.0083 -5.6807 22 6 7.5843 0.3387 -4.6441 23 6 2.0711 -2.0869 -2.9344 24 7 1.2920 -1.7198 -1.8737 25 1 -0.3934 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 4.2913 -2.0243 -4.6763 30 1 5.3264 0.2446 -2.9021 31 1 9.6047 -1.1772 -9.2548 32 1 9.4973 0.1202 -7.9874 33 1 9.1227 -3.2734 -6.2539 34 1 9.3408 -3.5683 -8.0334 35 1 9.3250 0.4424 -5.9328 36 1 7.7865 1.1152 -3.9212 37 1 1.8561 -2.8625 -3.6545 38 1 0.4385 -2.1087 -1.6264 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_13075132_15608776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:12:08 Heat of formation + Delta-G solvation = -14.429283 kcal Electronic energy + Delta-G solvation = -24291.561262 eV Core-core repulsion = 20408.298143 eV Total energy + Delta-G solvation = -3883.263119 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.98533 -42.34558 -40.39134 -38.26490 -37.96093 -35.51567 -34.90949 -33.33580 -32.11397 -31.09121 -30.19456 -27.41158 -26.81732 -26.60823 -24.23556 -22.70586 -21.87808 -21.22165 -20.81412 -20.05055 -19.83506 -18.62451 -18.26722 -17.73193 -17.10868 -16.65840 -16.37014 -15.98733 -15.89736 -15.58688 -15.39146 -15.26579 -15.05614 -14.83142 -14.56148 -13.99634 -13.98237 -13.59697 -13.38133 -13.21082 -13.07530 -12.98058 -12.61559 -12.10881 -11.99384 -11.67358 -11.59889 -11.44587 -11.17885 -11.02118 -10.71635 -10.38857 -10.28969 -9.97377 -9.59895 -9.42983 -8.61100 -4.69460 0.17954 0.93437 1.14113 1.44120 1.45850 1.63234 1.99680 2.07384 2.25493 2.69708 2.81611 2.97002 3.20741 3.52174 3.62161 3.78450 3.83610 3.84723 3.89407 4.02637 4.21965 4.38180 4.40648 4.44259 4.57572 4.60403 4.65864 4.69816 4.73846 4.84014 4.88531 4.96911 5.00602 5.05548 5.24126 5.55680 5.68360 5.74470 5.84690 6.13679 6.42653 6.52902 6.79663 6.96395 7.99180 8.32625 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.002183 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.102781 B =12822.488557 C =13333.648581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.038 4.038 3 Si 0.785 3.215 4 C 0.208 3.792 5 N -0.488 5.488 6 C 0.001 3.999 7 C -0.047 4.047 8 C -0.071 4.071 9 C 0.089 3.911 10 N -0.314 5.314 11 N -0.356 5.356 12 C 0.150 3.850 13 H 0.128 0.872 14 C -0.103 4.103 15 C -0.176 4.176 16 H 0.096 0.904 17 C 0.479 3.521 18 O -0.737 6.737 19 O -0.737 6.737 20 C -0.114 4.114 21 C 0.048 3.952 22 C -0.263 4.263 23 C -0.013 4.013 24 N -0.545 5.545 25 H 0.409 0.591 26 H 0.116 0.884 27 H -0.319 1.319 28 H -0.258 1.258 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.213 0.787 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.694 7.008 20.790 37.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.689 3.311 4 C -0.057 4.057 5 N -0.211 5.211 6 C -0.125 4.125 7 C -0.069 4.069 8 C -0.092 4.092 9 C -0.074 4.074 10 N -0.137 5.137 11 N -0.137 5.137 12 C 0.047 3.953 13 H 0.145 0.855 14 C -0.141 4.141 15 C -0.197 4.197 16 H 0.114 0.886 17 C 0.319 3.681 18 O -0.656 6.656 19 O -0.655 6.655 20 C -0.153 4.153 21 C -0.096 4.096 22 C -0.292 4.292 23 C -0.150 4.150 24 N -0.148 5.148 25 H 0.262 0.738 26 H 0.134 0.866 27 H -0.247 1.247 28 H -0.183 1.183 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.200 0.800 36 H 0.192 0.808 37 H 0.230 0.770 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -30.353 7.006 19.510 36.757 hybrid contribution -1.111 -0.535 0.428 1.305 sum -31.465 6.471 19.938 37.808 Atomic orbital electron populations 1.86357 1.17046 1.81395 1.52159 1.24138 0.84704 1.11901 0.94089 0.92313 0.91772 0.70660 0.76381 1.22901 0.91378 0.92765 0.98608 1.69834 1.17512 1.25839 1.07880 1.19466 0.97198 0.98619 0.97255 1.21190 0.91021 0.98581 0.96135 1.21195 0.90361 1.00787 0.96871 1.21389 0.96567 0.94843 0.94596 1.77520 1.01289 1.24424 1.10509 1.48366 1.15172 1.27588 1.22621 1.22072 0.95581 0.93558 0.84077 0.85463 1.23000 0.91344 1.00065 0.99720 1.23407 0.96675 0.99145 1.00425 0.88635 1.19031 0.85297 0.85065 0.78693 1.90570 1.58332 1.61561 1.55090 1.90573 1.79448 1.24189 1.71319 1.23040 0.93622 0.96294 1.02342 1.22851 1.00227 0.92138 0.94420 1.21837 0.96078 1.07522 1.03727 1.23431 0.92812 1.04025 0.94687 1.43146 1.20730 1.28577 1.22360 0.73792 0.86604 1.24726 1.18342 0.85163 0.83350 0.88504 0.88968 0.91865 0.89264 0.79977 0.80784 0.77029 0.72231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.85 12.73 -148.98 -1.90 -6.74 16 2 C -0.04 -0.40 3.07 71.24 0.22 -0.18 16 3 Si 0.79 9.42 32.26 68.60 2.21 11.63 16 4 C 0.21 3.55 7.05 137.97 0.97 4.53 16 5 N -0.49 -10.60 9.42 -177.31 -1.67 -12.27 16 6 C 0.00 0.02 6.84 40.60 0.28 0.30 16 7 C -0.05 -1.11 9.74 23.77 0.23 -0.88 16 8 C -0.07 -1.82 9.78 23.79 0.23 -1.59 16 9 C 0.09 2.71 6.98 42.28 0.30 3.00 16 10 N -0.31 -10.79 12.14 -48.53 -0.59 -11.38 16 11 N -0.36 -12.26 3.79 -325.12 -1.23 -13.49 16 12 C 0.15 5.22 5.18 45.52 0.24 5.46 16 13 H 0.13 3.87 8.14 -2.38 -0.02 3.85 16 14 C -0.10 -3.97 6.78 31.12 0.21 -3.76 16 15 C -0.18 -8.54 3.81 -11.01 -0.04 -8.58 16 16 H 0.10 4.38 6.96 -2.38 -0.02 4.36 16 17 C 0.48 31.65 7.47 71.24 0.53 32.18 16 18 O -0.74 -53.22 17.88 19.06 0.34 -52.88 16 19 O -0.74 -53.71 17.41 19.04 0.33 -53.38 16 20 C -0.11 -4.85 7.10 31.12 0.22 -4.63 16 21 C 0.05 1.51 9.59 83.44 0.80 2.31 16 22 C -0.26 -7.48 10.77 22.24 0.24 -7.24 16 23 C -0.01 -0.20 12.01 83.50 1.00 0.81 16 24 N -0.54 -7.53 6.04 -184.95 -1.12 -8.64 16 25 H 0.41 -0.14 8.74 -74.06 -0.65 -0.79 16 26 H 0.12 0.61 7.96 -2.38 -0.02 0.59 16 27 H -0.32 -7.17 7.11 99.48 0.71 -6.46 16 28 H -0.26 -2.92 7.11 99.48 0.71 -2.21 16 29 H 0.13 3.10 7.73 -2.91 -0.02 3.08 16 30 H 0.15 3.44 7.73 -2.91 -0.02 3.42 16 31 H 0.10 3.84 8.09 -2.39 -0.02 3.82 16 32 H 0.09 3.15 6.96 -2.39 -0.02 3.14 16 33 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.09 3.94 7.97 -2.39 -0.02 3.93 16 35 H 0.18 5.19 6.63 -2.91 -0.02 5.17 16 36 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.44 3.60 8.93 -92.71 -0.83 2.77 16 Total: -1.00 -94.00 342.15 1.50 -92.49 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.30 Total: 32.95 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.43 Total: 21.72 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -4.61 Total: -45.78 kcal Atomic # 8 Polarization: -111.78 SS G_CDS: -1.23 Total: -113.01 kcal Atomic # 14 Polarization: 9.42 SS G_CDS: 2.21 Total: 11.63 kcal Total: -94.00 1.50 -92.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_13075132_15608776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.062 kcal (2) G-P(sol) polarization free energy of solvation -93.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds