Wall clock time and date at job start Mon Mar 8 2021 14:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86304 * 109.46840 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99825 * 2 1 3 5 5 C 1.38278 * 119.93664 * 65.00356 * 4 2 1 6 6 C 1.38132 * 120.05665 * 180.29804 * 5 4 2 7 7 C 1.38776 * 119.93896 * 359.44944 * 6 5 4 8 8 O 1.35870 * 120.05686 * 180.24954 * 7 6 5 9 9 C 1.35851 * 118.00292 * 6.04303 * 8 7 6 10 10 C 1.35354 * 119.99878 * 246.92352 * 9 8 7 11 11 C 1.47129 * 120.00031 * 187.52490 * 10 9 8 12 12 N 1.32060 * 126.10323 * 0.84078 * 11 10 9 13 13 N 1.40069 * 108.04741 * 179.85636 * 12 11 10 14 14 C 1.46500 * 125.88736 * 180.17101 * 13 12 11 15 15 H 1.08994 * 112.84844 * 34.17713 * 14 13 12 16 16 C 1.53776 * 113.61150 * 165.48193 * 14 13 12 17 17 C 1.53783 * 87.08266 * 89.11561 * 16 14 13 18 18 H 1.08998 * 113.61130 * 270.88246 * 17 16 14 19 19 C 1.50702 * 113.69243 * 139.98773 * 17 16 14 20 20 O 1.21926 * 119.99772 * 52.46580 * 19 17 16 21 21 O 1.21915 * 120.00086 * 232.46692 * 19 17 16 22 22 C 1.53778 * 113.61319 * 262.97820 * 14 13 12 23 23 C 1.35133 * 108.22652 * 0.41787 * 13 12 11 24 24 C 1.34938 * 108.10040 * 359.75456 * 23 13 12 25 25 C 1.46644 * 120.00078 * 66.91826 * 9 8 7 26 26 C 1.38203 * 125.76888 * 53.84324 * 25 9 8 27 27 C 1.39411 * 106.97390 * 179.84356 * 26 25 9 28 28 C 1.38248 * 106.89456 * 0.40858 * 27 26 25 29 29 C 1.41504 * 125.84669 * 179.76235 * 28 27 26 30 30 O 1.22566 * 119.99622 * 5.32675 * 29 28 27 31 31 O 1.22565 * 119.99983 * 185.32643 * 29 28 27 32 32 O 1.34482 * 125.77354 * 234.14598 * 25 9 8 33 33 C 1.38761 * 119.88344 * 0.54870 * 7 6 5 34 34 C 1.38137 * 119.93927 * 359.72499 * 33 7 6 35 35 H 0.96700 * 114.00022 * 299.99973 * 1 2 3 36 36 H 1.09000 * 109.47309 * 240.00164 * 2 1 3 37 37 H 1.48503 * 109.99612 * 178.68006 * 3 2 1 38 38 H 1.48496 * 110.00078 * 299.99984 * 3 2 1 39 39 H 1.07998 * 119.97224 * 0.02562 * 5 4 2 40 40 H 1.08005 * 120.03163 * 179.69849 * 6 5 4 41 41 H 1.08001 * 120.00073 * 7.52033 * 10 9 8 42 42 H 1.09000 * 113.61604 * 203.66228 * 16 14 13 43 43 H 1.08999 * 113.61847 * 334.56485 * 16 14 13 44 44 H 1.09000 * 113.61194 * 25.43585 * 22 14 13 45 45 H 1.08999 * 113.61047 * 156.25221 * 22 14 13 46 46 H 1.07998 * 125.95346 * 179.77063 * 23 13 12 47 47 H 1.08006 * 126.08641 * 179.97438 * 24 23 13 48 48 H 1.07997 * 126.51234 * 359.95607 * 26 25 9 49 49 H 1.07998 * 126.55059 * 180.11458 * 27 26 25 50 50 H 1.07996 * 120.03314 * 179.70722 * 33 7 6 51 51 H 1.07998 * 119.97128 * 179.97438 * 34 33 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6840 -2.0606 1.3971 6 6 2.1380 -2.7128 2.5269 7 6 2.8528 -2.0143 3.4897 8 8 3.3048 -2.6546 4.5996 9 6 3.1446 -4.0019 4.6684 10 6 2.3064 -4.5377 5.5863 11 6 2.2561 -5.9962 5.7738 12 7 2.9826 -6.8894 5.1270 13 7 2.6330 -8.1596 5.6026 14 6 3.2044 -9.4318 5.1540 15 1 4.2587 -9.3523 4.8892 16 6 2.8892 -10.6121 6.0880 17 6 1.6151 -10.8293 5.2547 18 1 0.7555 -10.2648 5.6161 19 6 1.2975 -12.2805 5.0010 20 8 1.2362 -13.0632 5.9338 21 8 1.1019 -12.6718 3.8630 22 6 2.3546 -10.1480 4.0911 23 6 1.6740 -8.0098 6.5428 24 6 1.4176 -6.6914 6.6736 25 6 3.8795 -4.8757 3.7482 26 6 5.2481 -4.8779 3.5560 27 6 5.5239 -5.8587 2.6044 28 6 4.3128 -6.4168 2.2401 29 6 4.1287 -7.4508 1.2918 30 8 5.1014 -7.9974 0.7845 31 8 2.9965 -7.7999 0.9777 32 8 3.3353 -5.8065 2.9445 33 6 3.0996 -0.6594 3.3200 34 6 2.6385 -0.0108 2.1910 35 1 -0.3933 0.4417 0.7650 36 1 1.7924 -0.5138 -0.8900 37 1 3.5346 1.7703 0.0321 38 1 1.5615 2.4679 -1.2085 39 1 1.1316 -2.6047 0.6453 40 1 1.9404 -3.7664 2.6590 41 1 1.6746 -3.8947 6.1811 42 1 3.6046 -11.4311 6.0134 43 1 2.6919 -10.3136 7.1176 44 1 1.7257 -9.4747 3.5086 45 1 2.9241 -10.8390 3.4697 46 1 1.1962 -8.8063 7.0937 47 1 0.6990 -6.2468 7.3463 48 1 5.9675 -4.2420 4.0505 49 1 6.4973 -6.1274 2.2213 50 1 3.6515 -0.1125 4.0700 51 1 2.8299 1.0438 2.0585 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_13756172_15608776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:22:25 Heat of formation + Delta-G solvation = -205.004899 kcal Electronic energy + Delta-G solvation = -45347.937781 eV Core-core repulsion = 39529.521155 eV Total energy + Delta-G solvation = -5818.416627 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.128 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.38098 -42.43156 -41.62889 -40.48574 -39.69836 -39.48104 -38.33627 -37.30247 -35.25783 -34.95190 -34.88647 -33.75069 -32.22307 -32.07776 -31.45706 -30.94577 -29.81420 -27.32512 -26.89374 -26.45039 -25.39390 -24.09050 -23.41183 -22.94843 -22.48675 -21.88002 -20.91259 -20.80211 -20.37422 -19.98377 -19.39866 -18.28067 -18.03132 -17.76197 -17.47255 -17.28427 -17.03509 -16.69497 -16.45267 -16.35752 -16.04076 -15.98451 -15.90809 -15.67664 -15.55611 -15.46248 -15.12809 -14.97743 -14.89358 -14.72511 -14.62764 -14.22628 -14.11714 -14.07147 -13.83752 -13.81953 -13.59638 -13.42899 -13.38570 -13.22856 -13.15189 -12.68885 -12.35229 -12.04394 -11.96209 -11.72851 -11.65018 -11.52575 -11.28101 -10.85049 -10.65288 -10.51338 -10.42890 -10.37553 -10.33279 -10.27224 -10.08624 -9.98973 -9.64471 -9.49386 -9.30107 -8.97345 -4.92702 -0.36073 0.17778 0.28523 0.44399 1.07217 1.32025 1.37930 1.42032 1.76513 1.86779 2.04788 2.21541 2.38278 2.61281 2.89176 3.14212 3.29741 3.42328 3.50290 3.56561 3.63593 3.70612 3.73641 3.74806 3.77045 3.84680 3.93208 4.02264 4.10051 4.21690 4.25389 4.32351 4.44205 4.48142 4.51738 4.52391 4.55371 4.59203 4.62497 4.71249 4.76075 4.78599 4.81800 4.87854 4.92364 4.94493 5.07496 5.13147 5.15284 5.23632 5.30481 5.45913 5.51445 5.63131 5.76956 6.06920 6.09607 6.37061 6.73164 6.85540 7.57553 7.88710 8.01992 8.28212 Molecular weight = 451.13amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.001741 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.274252 B =16081.030353 C =16814.076349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.099 4.099 3 Si 0.826 3.174 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.207 4.207 7 C 0.104 3.896 8 O -0.221 6.221 9 C 0.110 3.890 10 C -0.019 4.019 11 C 0.056 3.944 12 N -0.298 5.298 13 N -0.350 5.350 14 C 0.144 3.856 15 H 0.093 0.907 16 C -0.080 4.080 17 C -0.163 4.163 18 H 0.106 0.894 19 C 0.486 3.514 20 O -0.724 6.724 21 O -0.738 6.738 22 C -0.122 4.122 23 C 0.043 3.957 24 C -0.236 4.236 25 C 0.003 3.997 26 C -0.182 4.182 27 C -0.166 4.166 28 C -0.082 4.082 29 C 0.539 3.461 30 O -0.706 6.706 31 O -0.722 6.722 32 O -0.134 6.134 33 C -0.121 4.121 34 C -0.069 4.069 35 H 0.396 0.604 36 H 0.087 0.913 37 H -0.279 1.279 38 H -0.290 1.290 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.207 0.793 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.032 0.968 45 H 0.062 0.938 46 H 0.197 0.803 47 H 0.200 0.800 48 H 0.187 0.813 49 H 0.153 0.847 50 H 0.178 0.822 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 50.857 12.475 52.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.205 4.205 3 Si 0.728 3.272 4 C -0.149 4.149 5 C -0.097 4.097 6 C -0.226 4.226 7 C 0.061 3.939 8 O -0.132 6.132 9 C 0.063 3.937 10 C -0.038 4.038 11 C -0.107 4.107 12 N -0.121 5.121 13 N -0.132 5.132 14 C 0.040 3.960 15 H 0.111 0.889 16 C -0.118 4.118 17 C -0.183 4.183 18 H 0.124 0.876 19 C 0.325 3.675 20 O -0.642 6.642 21 O -0.656 6.656 22 C -0.160 4.160 23 C -0.101 4.101 24 C -0.264 4.264 25 C -0.051 4.051 26 C -0.200 4.200 27 C -0.185 4.185 28 C -0.135 4.135 29 C 0.379 3.621 30 O -0.625 6.625 31 O -0.640 6.640 32 O -0.027 6.027 33 C -0.139 4.139 34 C -0.086 4.086 35 H 0.246 0.754 36 H 0.104 0.896 37 H -0.205 1.205 38 H -0.218 1.218 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.224 0.776 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.214 0.786 47 H 0.217 0.783 48 H 0.204 0.796 49 H 0.170 0.830 50 H 0.196 0.804 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.889 50.071 10.391 51.145 hybrid contribution -0.437 -2.443 -0.979 2.668 sum 0.452 47.628 9.411 48.551 Atomic orbital electron populations 1.86465 1.17544 1.82613 1.50224 1.25755 0.85296 1.13651 0.95804 0.93601 0.77315 0.72326 0.83993 1.20489 1.02118 0.93436 0.98854 1.20817 0.97847 0.95321 0.95708 1.21360 1.03994 0.99610 0.97645 1.19569 0.94678 0.93413 0.86237 1.84504 1.75672 1.15126 1.37894 1.17961 0.98626 0.80399 0.96725 1.21862 0.93500 0.89042 0.99414 1.21210 0.98295 0.93716 0.97441 1.78065 1.24978 0.88411 1.20666 1.48360 1.30740 1.04396 1.29739 1.21995 0.96934 0.80145 0.96897 0.88905 1.22902 0.96003 0.94176 0.98709 1.23411 0.99022 0.99072 0.96776 0.87599 1.18804 0.75530 0.88219 0.84950 1.90519 1.64455 1.59591 1.49663 1.90599 1.62480 1.82371 1.30164 1.22925 0.98774 0.97785 0.96565 1.23106 0.92889 1.00153 0.93922 1.21835 1.07027 0.90857 1.06707 1.21568 0.92898 0.93620 0.96983 1.22107 0.94521 1.01994 1.01419 1.22163 0.97410 0.98714 1.00241 1.23617 0.87840 1.01445 1.00601 1.15027 0.85877 0.80899 0.80292 1.90745 1.46557 1.62377 1.62793 1.90792 1.30620 1.71801 1.70762 1.84253 1.36534 1.40069 1.41880 1.20789 1.03052 0.89610 1.00410 1.21136 0.95374 1.00602 0.91477 0.75420 0.89568 1.20539 1.21787 0.87931 0.89268 0.77622 0.88413 0.86685 0.94923 0.91924 0.78613 0.78274 0.79623 0.82975 0.80442 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -17.88 12.83 -148.98 -1.91 -19.80 16 2 C -0.10 -3.15 2.80 71.24 0.20 -2.95 16 3 Si 0.83 18.62 29.80 68.60 2.04 20.67 16 4 C -0.15 -5.33 5.35 -19.85 -0.11 -5.44 16 5 C -0.08 -3.63 9.68 22.25 0.22 -3.42 16 6 C -0.21 -10.41 8.79 22.37 0.20 -10.21 16 7 C 0.10 4.44 6.56 22.52 0.15 4.59 16 8 O -0.22 -9.68 10.00 -34.99 -0.35 -10.03 16 9 C 0.11 5.61 4.71 23.80 0.11 5.72 16 10 C -0.02 -0.87 10.12 23.94 0.24 -0.63 16 11 C 0.06 3.10 6.83 42.20 0.29 3.39 16 12 N -0.30 -19.79 8.88 -48.62 -0.43 -20.23 16 13 N -0.35 -22.61 3.80 -325.17 -1.23 -23.84 16 14 C 0.14 9.95 5.18 45.52 0.24 10.19 16 15 H 0.09 6.55 8.14 -2.39 -0.02 6.53 16 16 C -0.08 -5.12 6.79 31.12 0.21 -4.91 16 17 C -0.16 -12.28 3.78 -11.01 -0.04 -12.32 16 18 H 0.11 7.44 6.80 -2.39 -0.02 7.42 16 19 C 0.49 43.64 7.47 71.24 0.53 44.17 16 20 O -0.72 -66.29 17.88 19.04 0.34 -65.95 16 21 O -0.74 -72.92 17.41 19.07 0.33 -72.59 16 22 C -0.12 -9.80 7.10 31.12 0.22 -9.58 16 23 C 0.04 2.31 9.57 83.43 0.80 3.10 16 24 C -0.24 -11.40 10.78 22.26 0.24 -11.16 16 25 C 0.00 0.16 3.77 24.46 0.09 0.25 16 26 C -0.18 -10.93 10.86 22.54 0.24 -10.69 16 27 C -0.17 -11.67 10.56 22.55 0.24 -11.44 16 28 C -0.08 -6.74 6.95 23.08 0.16 -6.58 16 29 C 0.54 51.95 7.84 68.63 0.54 52.49 16 30 O -0.71 -69.63 17.69 16.86 0.30 -69.34 16 31 O -0.72 -74.87 17.97 20.77 0.37 -74.50 16 32 O -0.13 -10.22 8.18 -2.36 -0.02 -10.24 16 33 C -0.12 -3.89 9.99 22.37 0.22 -3.67 16 34 C -0.07 -2.01 8.66 22.25 0.19 -1.81 16 35 H 0.40 8.62 8.70 -74.06 -0.64 7.97 16 36 H 0.09 3.13 7.96 -2.39 -0.02 3.11 16 37 H -0.28 -7.36 7.11 99.48 0.71 -6.66 16 38 H -0.29 -8.07 7.11 99.48 0.71 -7.36 16 39 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.09 5.33 5.76 -2.91 -0.02 5.31 16 41 H 0.21 7.17 8.06 -2.91 -0.02 7.14 16 42 H 0.10 6.33 8.10 -2.39 -0.02 6.32 16 43 H 0.11 6.32 7.07 -2.39 -0.02 6.30 16 44 H 0.03 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.06 5.40 7.98 -2.39 -0.02 5.38 16 46 H 0.20 9.45 6.56 -2.91 -0.02 9.43 16 47 H 0.20 7.34 8.06 -2.91 -0.02 7.32 16 48 H 0.19 9.24 8.06 -2.91 -0.02 9.21 16 49 H 0.15 10.27 8.06 -2.91 -0.02 10.24 16 50 H 0.18 4.31 8.06 -2.91 -0.02 4.28 16 51 H 0.18 3.45 4.90 -2.91 -0.01 3.44 16 Total: -2.00 -228.56 451.24 5.07 -223.49 By element: Atomic # 1 Polarization: 92.79 SS G_CDS: 0.45 Total: 93.24 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 5.18 Total: 29.10 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -1.67 Total: -44.07 kcal Atomic # 8 Polarization: -321.49 SS G_CDS: -0.94 Total: -322.43 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: 2.04 Total: 20.67 kcal Total: -228.56 5.07 -223.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_13756172_15608776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.483 kcal (2) G-P(sol) polarization free energy of solvation -228.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -223.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds