Wall clock time and date at job start Mon Mar 8 2021 16:24:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45208 * 1
3 3 C 1.34224 * 116.99851 * 2 1
4 4 O 1.20826 * 120.00798 * 0.02562 * 3 2 1
5 5 C 1.50709 * 119.99519 * 180.02562 * 3 2 1
6 6 H 1.08997 * 112.84943 * 311.20013 * 5 3 2
7 7 C 1.54052 * 113.69364 * 82.47037 * 5 3 2
8 8 C 1.53782 * 86.98646 * 139.98780 * 7 5 3
9 9 H 1.08997 * 113.61665 * 219.97762 * 8 7 5
10 10 N 1.46498 * 113.61403 * 89.15591 * 8 7 5
11 11 N 1.40032 * 126.13757 * 315.37773 * 10 8 7
12 12 C 1.30912 * 108.85538 * 179.97438 * 11 10 8
13 13 C 1.39325 * 108.78651 * 0.22401 * 12 11 10
14 14 C 1.36687 * 126.12991 * 135.33226 * 10 8 7
15 15 C 1.46615 * 126.50169 * 0.03367 * 14 10 8
16 16 C 1.35019 * 119.99939 * 54.47020 * 15 14 10
17 17 C 1.50701 * 119.99791 * 6.29612 * 16 15 14
18 18 C 1.50700 * 109.46837 * 95.16147 * 17 16 15
19 19 O 1.21926 * 120.00171 * 5.10312 * 18 17 16
20 20 O 1.21921 * 120.00013 * 185.10310 * 18 17 16
21 21 C 1.46373 * 120.00149 * 186.29971 * 16 15 14
22 22 C 1.36628 * 125.99106 * 114.71416 * 21 16 15
23 23 C 1.40678 * 106.70319 * 179.85462 * 22 21 16
24 24 C 1.34892 * 107.11237 * 0.41040 * 23 22 21
25 25 C 1.50709 * 125.60886 * 179.77109 * 24 23 22
26 26 O 1.42901 * 109.46687 * 299.99349 * 25 24 23
27 27 Si 1.86301 * 109.46839 * 179.97438 * 25 24 23
28 28 O 1.34317 * 108.77612 * 359.74468 * 24 23 22
29 29 C 1.53781 * 113.61212 * 180.02562 * 5 3 2
30 30 H 1.09000 * 109.46369 * 299.99720 * 1 2 3
31 31 H 1.08996 * 109.47189 * 59.99611 * 1 2 3
32 32 H 1.08992 * 109.47195 * 179.97438 * 1 2 3
33 33 H 1.09004 * 113.61288 * 25.48228 * 7 5 3
34 34 H 1.08998 * 113.69578 * 254.50617 * 7 5 3
35 35 H 1.08003 * 125.60873 * 179.97438 * 12 11 10
36 36 H 1.08004 * 126.18909 * 179.77070 * 13 12 11
37 37 H 1.08001 * 120.00058 * 234.47369 * 15 14 10
38 38 H 1.08997 * 109.47268 * 215.15619 * 17 16 15
39 39 H 1.08996 * 109.47466 * 335.16770 * 17 16 15
40 40 H 1.08002 * 126.64528 * 0.02562 * 22 21 16
41 41 H 1.07998 * 126.43937 * 180.19454 * 23 22 21
42 42 H 1.09002 * 109.47434 * 59.99820 * 25 24 23
43 43 H 0.96697 * 114.00623 * 300.00118 * 26 25 24
44 44 H 1.48500 * 109.99700 * 179.97438 * 27 25 24
45 45 H 1.48504 * 110.00034 * 301.31675 * 27 25 24
46 46 H 1.08998 * 113.61304 * 105.38559 * 29 5 3
47 47 H 1.09004 * 113.69101 * 334.49666 * 29 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4035 2.2094 0.0005
5 6 3.5664 1.2747 -0.0006
6 1 4.0240 0.6360 0.7549
7 6 4.1938 1.1228 -1.3994
8 6 5.1821 2.2264 -0.9869
9 1 5.3991 2.9382 -1.7834
10 7 6.3908 1.7176 -0.3339
11 7 6.4397 0.7347 0.6623
12 6 7.6885 0.5396 1.0031
13 6 8.4971 1.3875 0.2493
14 6 7.6731 2.1166 -0.5884
15 6 8.0945 3.1296 -1.5610
16 6 7.5631 4.3700 -1.5170
17 6 6.6457 4.7569 -0.3857
18 6 7.4399 5.4528 0.6895
19 8 8.6199 5.7023 0.5108
20 8 6.9025 5.7664 1.7379
21 6 7.8780 5.3389 -2.5680
22 6 6.9933 5.8644 -3.4667
23 6 7.7228 6.7484 -4.2825
24 6 9.0026 6.7162 -3.8575
25 6 10.1430 7.5062 -4.4464
26 8 10.3060 7.1541 -5.8217
27 14 11.7106 7.1213 -3.5162
28 8 9.0932 5.8647 -2.8227
29 6 4.1079 2.7141 0.0001
30 1 -0.3632 0.5138 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 3.5271 1.4147 -2.2109
34 1 4.6651 0.1541 -1.5652
35 1 8.0348 -0.1605 1.7492
36 1 9.5732 1.4603 0.3068
37 1 8.8300 2.8835 -2.3127
38 1 5.8725 5.4287 -0.7585
39 1 6.1811 3.8618 0.0277
40 1 5.9379 5.6459 -3.5356
41 1 7.3323 7.3388 -5.0982
42 1 9.9262 8.5715 -4.3673
43 1 10.5017 6.2184 -5.9678
44 1 12.8429 7.8937 -4.0877
45 1 11.5427 7.4537 -2.0786
46 1 4.5100 3.0288 0.9631
47 1 3.4187 3.4415 -0.4289
There are 71 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 71
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_6_14316468_15431928.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 16:24:40
Heat of formation + Delta-G solvation = -95.328165 kcal
Electronic energy + Delta-G solvation = -36686.683756 eV
Core-core repulsion = 31690.954084 eV
Total energy + Delta-G solvation = -4995.729672 eV
No. of doubly occupied orbitals = 71
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 388.137 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-42.24798 -41.31934 -40.44827 -38.22291 -37.36178 -36.94467 -36.37925 -34.86545
-32.66462 -32.17795 -31.34920 -30.34800 -29.14579 -28.42941 -27.01644 -26.08059
-25.74289 -25.32100 -22.51995 -21.93143 -21.29320 -20.49143 -20.29973 -19.54078
-18.38935 -17.88292 -17.75802 -17.17790 -16.89704 -16.49343 -16.29429 -16.17429
-15.75845 -15.33031 -15.01244 -14.58287 -14.44260 -14.41299 -14.03142 -13.73016
-13.44818 -13.35793 -13.23837 -13.16765 -13.01086 -12.87492 -12.79313 -12.59319
-12.56242 -12.43223 -12.11240 -12.02489 -11.86849 -11.74528 -11.17955 -10.97402
-10.96018 -10.87176 -10.74885 -10.61611 -10.50756 -10.18431 -9.70671 -9.57917
-9.46533 -8.69551 -8.10608 -7.90065 -7.59461 -7.51170 -7.01625 -3.99746
1.45586 1.92040 2.08433 2.23112 2.36059 2.58557 2.61151 2.69790
2.84880 3.12281 3.18627 3.46100 4.09366 4.27564 4.28055 4.54964
4.62024 4.69690 4.90762 4.97711 5.00758 5.03732 5.15933 5.22735
5.29232 5.33550 5.37044 5.39309 5.48615 5.49287 5.53792 5.60190
5.69879 5.94144 5.98897 6.03669 6.05073 6.10194 6.12140 6.25451
6.27174 6.31272 6.44670 6.51091 6.59862 6.73789 6.88863 6.99922
7.03431 7.27661 7.31967 7.48252 7.65540 8.03251 10.53487 10.91241
Molecular weight = 388.14amu
Principal moments of inertia in cm(-1)
A = 0.011305 B = 0.002494 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2476.092849 B =11224.796443 C =11968.476156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.358 6.358
3 C 0.472 3.528
4 O -0.505 6.505
5 C -0.105 4.105
6 H 0.141 0.859
7 C -0.120 4.120
8 C 0.136 3.864
9 H 0.122 0.878
10 N -0.353 5.353
11 N -0.302 5.302
12 C 0.049 3.951
13 C -0.256 4.256
14 C 0.143 3.857
15 C -0.115 4.115
16 C 0.029 3.971
17 C -0.170 4.170
18 C 0.503 3.497
19 O -0.682 6.682
20 O -0.695 6.695
21 C 0.066 3.934
22 C -0.212 4.212
23 C -0.171 4.171
24 C -0.074 4.074
25 C -0.021 4.021
26 O -0.536 6.536
27 Si 0.694 3.306
28 O -0.145 6.145
29 C -0.126 4.126
30 H 0.062 0.938
31 H 0.061 0.939
32 H 0.099 0.901
33 H 0.101 0.899
34 H 0.091 0.909
35 H 0.181 0.819
36 H 0.149 0.851
37 H 0.137 0.863
38 H 0.071 0.929
39 H 0.088 0.912
40 H 0.148 0.852
41 H 0.147 0.853
42 H 0.128 0.872
43 H 0.381 0.619
44 H -0.252 1.252
45 H -0.245 1.245
46 H 0.095 0.905
47 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.904 -11.615 -12.958 17.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.274 6.274
3 C 0.315 3.685
4 O -0.392 6.392
5 C -0.123 4.123
6 H 0.159 0.841
7 C -0.158 4.158
8 C 0.033 3.967
9 H 0.140 0.860
10 N -0.136 5.136
11 N -0.123 5.123
12 C -0.135 4.135
13 C -0.285 4.285
14 C 0.018 3.982
15 C -0.135 4.135
16 C 0.027 3.973
17 C -0.210 4.210
18 C 0.337 3.663
19 O -0.597 6.597
20 O -0.612 6.612
21 C 0.015 3.985
22 C -0.231 4.231
23 C -0.190 4.190
24 C -0.124 4.124
25 C -0.132 4.132
26 O -0.341 6.341
27 Si 0.594 3.406
28 O -0.040 6.040
29 C -0.164 4.164
30 H 0.081 0.919
31 H 0.080 0.920
32 H 0.118 0.882
33 H 0.119 0.881
34 H 0.110 0.890
35 H 0.198 0.802
36 H 0.166 0.834
37 H 0.155 0.845
38 H 0.089 0.911
39 H 0.107 0.893
40 H 0.166 0.834
41 H 0.165 0.835
42 H 0.145 0.855
43 H 0.228 0.772
44 H -0.177 1.177
45 H -0.168 1.168
46 H 0.113 0.887
47 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -4.434 -10.552 -11.920 16.525
hybrid contribution -0.416 0.630 -0.314 0.817
sum -4.850 -9.922 -12.234 16.482
Atomic orbital electron populations
1.23255 0.76737 1.03532 1.02508 1.86547 1.23131 1.33702 1.84045
1.23788 0.91837 0.81159 0.71748 1.90664 1.67026 1.36395 1.45165
1.22741 0.86487 1.01426 1.01693 0.84144 1.23279 0.96988 1.00447
0.95119 1.22010 0.82470 0.96428 0.95763 0.86018 1.48643 1.04015
1.30736 1.30225 1.77036 1.20881 1.08425 1.05935 1.23574 0.90281
0.99791 0.99867 1.21725 1.00475 1.03391 1.02862 1.19917 0.84293
0.96404 0.97601 1.21064 1.01790 0.91654 0.98974 1.19858 0.97023
0.89442 0.90937 1.22436 0.99225 1.03168 0.96136 1.17911 0.85778
0.78484 0.84140 1.90663 1.20041 1.64208 1.84764 1.90656 1.76166
1.63540 1.30835 1.20638 0.82540 0.98299 0.96986 1.21781 1.00276
1.02183 0.98906 1.21325 0.92428 1.02596 1.02659 1.22759 0.97937
0.98877 0.92852 1.24234 1.02943 0.99101 0.86898 1.86486 1.93575
1.31676 1.22409 0.94260 0.75898 0.90250 0.80175 1.84167 1.32340
1.45991 1.41549 1.23465 0.96242 0.94777 1.01922 0.91925 0.91999
0.88212 0.88086 0.89030 0.80213 0.83376 0.84517 0.91059 0.89345
0.83389 0.83533 0.85486 0.77175 1.17693 1.16803 0.88658 0.86879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 10.56 101.05 1.07 1.36 16
2 O -0.36 -4.28 10.57 -39.24 -0.41 -4.70 16
3 C 0.47 6.44 7.49 36.01 0.27 6.71 16
4 O -0.51 -8.10 15.65 -18.75 -0.29 -8.40 16
5 C -0.10 -1.39 3.86 -90.81 -0.35 -1.74 16
6 H 0.14 1.96 7.02 -51.93 -0.36 1.60 16
7 C -0.12 -1.39 7.35 -25.78 -0.19 -1.58 16
8 C 0.14 1.99 3.08 -67.10 -0.21 1.79 16
9 H 0.12 1.70 6.46 -51.93 -0.34 1.37 16
10 N -0.35 -6.02 3.10 -50.07 -0.16 -6.17 16
11 N -0.30 -5.09 10.86 30.52 0.33 -4.76 16
12 C 0.05 0.78 11.97 -17.54 -0.21 0.57 16
13 C -0.26 -4.45 10.84 -39.16 -0.42 -4.88 16
14 C 0.14 2.65 5.66 -82.31 -0.47 2.18 16
15 C -0.12 -2.12 9.38 -37.35 -0.35 -2.47 16
16 C 0.03 0.62 3.59 -102.49 -0.37 0.25 16
17 C -0.17 -4.17 4.82 -29.03 -0.14 -4.31 16
18 C 0.50 16.49 8.04 36.01 0.29 16.78 16
19 O -0.68 -24.06 16.94 -20.23 -0.34 -24.40 16
20 O -0.70 -25.38 18.00 -20.23 -0.36 -25.74 16
21 C 0.07 1.31 6.63 -36.89 -0.24 1.07 16
22 C -0.21 -3.57 10.87 -39.24 -0.43 -3.99 16
23 C -0.17 -2.64 10.76 -39.85 -0.43 -3.07 16
24 C -0.07 -1.19 6.22 -35.49 -0.22 -1.41 16
25 C -0.02 -0.27 2.98 36.01 0.11 -0.16 16
26 O -0.54 -5.89 12.87 -35.23 -0.45 -6.34 16
27 Si 0.69 8.88 32.10 -169.99 -5.46 3.42 16
28 O -0.14 -2.85 9.06 4.20 0.04 -2.81 16
29 C -0.13 -1.93 6.27 -25.90 -0.16 -2.10 16
30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16
31 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16
32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16
34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16
35 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16
36 H 0.15 2.34 8.06 -52.48 -0.42 1.92 16
37 H 0.14 2.13 8.06 -52.49 -0.42 1.70 16
38 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16
39 H 0.09 2.02 2.77 -51.93 -0.14 1.87 16
40 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16
41 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16
42 H 0.13 1.58 7.96 -51.93 -0.41 1.17 16
43 H 0.38 2.70 8.70 45.56 0.40 3.10 16
44 H -0.25 -3.30 7.11 56.52 0.40 -2.90 16
45 H -0.24 -4.51 7.11 56.52 0.40 -4.11 16
46 H 0.09 1.75 7.68 -51.93 -0.40 1.36 16
47 H 0.11 1.66 7.44 -51.93 -0.39 1.27 16
LS Contribution 410.83 15.07 6.19 6.19
Total: -1.00 -43.86 410.83 -8.86 -52.72
By element:
Atomic # 1 Polarization: 21.48 SS G_CDS: -5.49 Total: 15.99 kcal
Atomic # 6 Polarization: 7.44 SS G_CDS: -2.45 Total: 4.99 kcal
Atomic # 7 Polarization: -11.10 SS G_CDS: 0.18 Total: -10.93 kcal
Atomic # 8 Polarization: -70.55 SS G_CDS: -1.83 Total: -72.38 kcal
Atomic # 14 Polarization: 8.88 SS G_CDS: -5.46 Total: 3.42 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -43.86 -8.86 -52.72 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_6_14316468_15431928.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.605 kcal
(2) G-P(sol) polarization free energy of solvation -43.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds