Wall clock time and date at job start Mon Mar 8 2021 16:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.46958 * 2 1 4 4 C 1.50693 * 109.47111 * 120.00214 * 2 1 3 5 5 C 1.34856 * 125.62160 * 65.00209 * 4 2 1 6 6 C 1.40725 * 107.10699 * 179.72079 * 5 4 2 7 7 C 1.36533 * 106.70263 * 0.40907 * 6 5 4 8 8 C 1.46530 * 125.97941 * 179.85392 * 7 6 5 9 9 C 1.34671 * 119.99975 * 64.71389 * 8 7 6 10 10 C 1.47320 * 119.99965 * 186.88620 * 9 8 7 11 11 N 1.31980 * 126.09055 * 5.12696 * 10 9 8 12 12 N 1.40068 * 108.05655 * 179.84646 * 11 10 9 13 13 C 1.46505 * 125.89538 * 180.16338 * 12 11 10 14 14 H 1.08998 * 112.84568 * 36.48813 * 13 12 11 15 15 C 1.53773 * 113.61712 * 167.79549 * 13 12 11 16 16 C 1.53785 * 87.08233 * 89.11568 * 15 13 12 17 17 H 1.08996 * 113.61479 * 270.88516 * 16 15 13 18 18 C 1.50697 * 113.68925 * 139.99045 * 16 15 13 19 19 O 1.21919 * 120.00119 * 52.46814 * 18 16 15 20 20 O 1.21920 * 120.00211 * 232.46502 * 18 16 15 21 21 C 1.53780 * 113.61454 * 265.29553 * 13 12 11 22 22 C 1.35105 * 108.21550 * 0.41604 * 12 11 10 23 23 C 1.34964 * 108.07936 * 359.75157 * 22 12 11 24 24 C 1.50699 * 119.99835 * 244.71349 * 8 7 6 25 25 C 1.50702 * 109.47198 * 86.77489 * 24 8 7 26 26 O 1.21922 * 119.99681 * 359.97438 * 25 24 8 27 27 O 1.21917 * 119.99666 * 179.97438 * 25 24 8 28 28 O 1.34334 * 125.61927 * 244.96905 * 4 2 1 29 29 H 0.96702 * 113.99442 * 299.99997 * 1 2 3 30 30 H 1.09000 * 109.46529 * 240.00207 * 2 1 3 31 31 H 1.48506 * 110.00311 * 300.00284 * 3 2 1 32 32 H 1.48504 * 110.00058 * 61.32190 * 3 2 1 33 33 H 1.08000 * 126.44707 * 359.97438 * 5 4 2 34 34 H 1.07993 * 126.65024 * 180.29367 * 6 5 4 35 35 H 1.08000 * 120.00423 * 6.89240 * 9 8 7 36 36 H 1.08994 * 113.61724 * 203.66444 * 15 13 12 37 37 H 1.09002 * 113.61527 * 334.56976 * 15 13 12 38 38 H 1.09003 * 113.61333 * 25.42772 * 21 13 12 39 39 H 1.08998 * 113.61706 * 156.33203 * 21 13 12 40 40 H 1.07996 * 125.96103 * 179.75432 * 22 12 11 41 41 H 1.08007 * 126.08360 * 180.02562 * 23 22 12 42 42 H 1.09000 * 109.46981 * 206.77104 * 24 8 7 43 43 H 1.09003 * 109.47066 * 326.77063 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7564 -2.0183 1.5086 6 6 2.3849 -2.2666 2.7430 7 6 2.9094 -1.0779 3.1624 8 6 3.6536 -0.8559 4.4050 9 6 4.8444 -1.4563 4.5930 10 6 5.5214 -1.3571 5.8977 11 7 5.0317 -0.7956 6.9870 12 7 5.9868 -0.9160 8.0045 13 6 5.8441 -0.4285 9.3786 14 1 4.8285 -0.5314 9.7608 15 6 6.9218 -0.9624 10.3368 16 6 7.7701 0.2561 9.9360 17 1 8.4028 0.0806 9.0660 18 6 8.5173 0.8787 11.0871 19 8 9.2239 0.1871 11.8005 20 8 8.4153 2.0739 11.3050 21 6 6.4482 0.9678 9.6028 22 6 7.0647 -1.5543 7.4985 23 6 6.8125 -1.8404 6.2038 24 6 3.0867 0.0442 5.4724 25 6 2.1795 -0.7541 6.3729 26 8 2.0089 -1.9436 6.1667 27 8 1.6163 -0.2104 7.3076 28 8 2.6278 -0.1454 2.2305 29 1 -0.3932 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 1.5614 2.4680 -1.2085 32 1 1.5879 2.4585 1.2243 33 1 1.2359 -2.7404 0.8970 34 1 2.4398 -3.2134 3.2595 35 1 5.3030 -2.0105 3.7875 36 1 6.6171 -0.9572 11.3832 37 1 7.3507 -1.9146 10.0245 38 1 6.4946 1.5738 8.6980 39 1 6.0140 1.5008 10.4486 40 1 7.9702 -1.7938 8.0361 41 1 7.4793 -2.3490 5.5232 42 1 3.9008 0.4681 6.0603 43 1 2.5186 0.8487 5.0052 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_14316468_15608776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:27:48 Heat of formation + Delta-G solvation = -208.840664 kcal Electronic energy + Delta-G solvation = -33173.247834 eV Core-core repulsion = 28341.789250 eV Total energy + Delta-G solvation = -4831.458585 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.113 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -43.53132 -42.36999 -40.45444 -39.56162 -38.26990 -38.03977 -36.32256 -34.88319 -34.62809 -33.91360 -32.31536 -31.22047 -30.53158 -29.02636 -27.21010 -26.82345 -26.18631 -23.53111 -22.87420 -22.37694 -21.23976 -20.84292 -20.36838 -19.89946 -19.47502 -18.45447 -17.70429 -17.37367 -17.26588 -17.03145 -16.53305 -16.26947 -16.17759 -16.02512 -15.90469 -15.57673 -15.51822 -15.30071 -14.92237 -14.78643 -14.36676 -14.23549 -14.04572 -13.87624 -13.75272 -13.64893 -13.33116 -13.21866 -13.11403 -12.91225 -12.72718 -12.52859 -12.09467 -11.83733 -11.53533 -11.21376 -11.05656 -10.88645 -10.67321 -10.37028 -10.27207 -10.24016 -10.11094 -9.89894 -9.60582 -9.49792 -9.39829 -8.82306 -4.89625 0.13199 0.73033 1.22171 1.23369 1.49250 1.54567 1.65140 1.93447 1.98260 2.40204 2.97001 3.21118 3.23587 3.27582 3.51479 3.55829 3.77097 3.82427 3.87140 3.96279 4.03441 4.13759 4.17629 4.38271 4.50538 4.52617 4.56118 4.59754 4.61539 4.63471 4.68974 4.79433 4.80571 4.85893 4.97317 4.97664 4.98394 5.03771 5.16362 5.24977 5.38122 5.56511 5.67441 5.85788 6.09223 6.23507 6.34171 6.89189 7.96322 8.13305 8.34203 8.51817 Molecular weight = 373.11amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002111 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.568348 B =13262.665053 C =13487.493145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.028 4.028 3 Si 0.766 3.234 4 C -0.069 4.069 5 C -0.169 4.169 6 C -0.188 4.188 7 C 0.027 3.973 8 C -0.010 4.010 9 C -0.060 4.060 10 C 0.075 3.925 11 N -0.311 5.311 12 N -0.361 5.361 13 C 0.133 3.867 14 H 0.090 0.910 15 C -0.093 4.093 16 C -0.163 4.163 17 H 0.104 0.896 18 C 0.487 3.513 19 O -0.731 6.731 20 O -0.734 6.734 21 C -0.114 4.114 22 C 0.049 3.951 23 C -0.251 4.251 24 C -0.143 4.143 25 C 0.506 3.494 26 O -0.716 6.716 27 O -0.755 6.755 28 O -0.178 6.178 29 H 0.387 0.613 30 H 0.171 0.829 31 H -0.248 1.248 32 H -0.321 1.321 33 H 0.179 0.821 34 H 0.143 0.857 35 H 0.177 0.823 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.199 0.801 41 H 0.193 0.807 42 H 0.096 0.904 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -6.060 -34.613 35.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.137 4.137 3 Si 0.670 3.330 4 C -0.119 4.119 5 C -0.188 4.188 6 C -0.207 4.207 7 C -0.023 4.023 8 C -0.014 4.014 9 C -0.079 4.079 10 C -0.088 4.088 11 N -0.134 5.134 12 N -0.142 5.142 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.132 4.132 16 C -0.183 4.183 17 H 0.122 0.878 18 C 0.327 3.673 19 O -0.649 6.649 20 O -0.652 6.652 21 C -0.153 4.153 22 C -0.095 4.095 23 C -0.280 4.280 24 C -0.182 4.182 25 C 0.345 3.655 26 O -0.633 6.633 27 O -0.675 6.675 28 O -0.076 6.076 29 H 0.236 0.764 30 H 0.188 0.812 31 H -0.173 1.173 32 H -0.249 1.249 33 H 0.196 0.804 34 H 0.161 0.839 35 H 0.195 0.805 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.216 0.784 41 H 0.210 0.790 42 H 0.114 0.886 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.981 -4.648 -33.929 34.606 hybrid contribution -0.803 -0.277 1.236 1.499 sum -5.783 -4.925 -32.693 33.564 Atomic orbital electron populations 1.86542 1.17387 1.80571 1.49619 1.24613 0.83343 1.12309 0.93402 0.93525 0.90676 0.71936 0.76864 1.23475 1.01430 0.94101 0.92903 1.21694 1.03740 0.96345 0.97056 1.22060 1.02699 0.98184 0.97743 1.20435 1.04050 0.87790 0.89988 1.19385 0.93366 0.99100 0.89534 1.21350 0.92991 1.00681 0.92872 1.21372 0.95223 0.99046 0.93118 1.78244 1.13591 1.24628 0.96980 1.48586 1.12420 1.44386 1.08845 1.22101 1.00369 0.96440 0.78098 0.89219 1.22957 0.93231 0.98342 0.98636 1.23365 0.96671 0.97694 1.00590 0.87807 1.18801 0.79600 0.85258 0.83679 1.90545 1.49816 1.68374 1.56169 1.90562 1.73809 1.22124 1.78727 1.23014 0.95957 0.95106 1.01202 1.23013 0.93573 0.97331 0.95578 1.21805 0.96981 1.12764 0.96409 1.21661 1.01372 0.98222 0.96993 1.18425 0.79231 0.85684 0.82127 1.90493 1.72360 1.20959 1.79477 1.90527 1.59955 1.77154 1.39835 1.84021 1.58159 1.38572 1.26848 0.76387 0.81204 1.17262 1.24940 0.80382 0.83883 0.80531 0.88504 0.88259 0.92196 0.89640 0.78416 0.79027 0.88581 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -18.64 12.88 -148.98 -1.92 -20.56 16 2 C -0.03 -0.93 2.98 71.23 0.21 -0.72 16 3 Si 0.77 25.25 32.10 68.60 2.20 27.46 16 4 C -0.07 -3.02 6.21 24.91 0.15 -2.86 16 5 C -0.17 -7.59 10.77 22.10 0.24 -7.35 16 6 C -0.19 -10.14 10.86 22.48 0.24 -9.90 16 7 C 0.03 1.58 6.63 24.03 0.16 1.73 16 8 C -0.01 -0.63 4.41 -18.52 -0.08 -0.71 16 9 C -0.06 -3.55 9.83 23.84 0.23 -3.31 16 10 C 0.07 4.75 6.75 42.24 0.29 5.04 16 11 N -0.31 -22.57 8.49 -48.56 -0.41 -22.98 16 12 N -0.36 -23.80 3.79 -325.16 -1.23 -25.03 16 13 C 0.13 8.79 5.18 45.51 0.24 9.02 16 14 H 0.09 6.17 8.14 -2.39 -0.02 6.15 16 15 C -0.09 -5.83 6.79 31.12 0.21 -5.62 16 16 C -0.16 -11.32 3.80 -11.01 -0.04 -11.36 16 17 H 0.10 6.77 6.96 -2.39 -0.02 6.76 16 18 C 0.49 40.73 7.47 71.23 0.53 41.26 16 19 O -0.73 -64.22 17.88 19.06 0.34 -63.88 16 20 O -0.73 -66.08 17.41 19.06 0.33 -65.75 16 21 C -0.11 -7.86 7.10 31.12 0.22 -7.64 16 22 C 0.05 2.77 9.58 83.44 0.80 3.57 16 23 C -0.25 -13.55 10.78 22.25 0.24 -13.31 16 24 C -0.14 -10.97 5.19 29.10 0.15 -10.81 16 25 C 0.51 45.57 7.20 71.24 0.51 46.08 16 26 O -0.72 -66.16 16.93 19.05 0.32 -65.84 16 27 O -0.75 -73.96 18.00 19.06 0.34 -73.61 16 28 O -0.18 -9.32 9.07 -7.79 -0.07 -9.39 16 29 H 0.39 12.70 8.70 -74.06 -0.64 12.05 16 30 H 0.17 4.43 7.96 -2.39 -0.02 4.41 16 31 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 32 H -0.32 -14.28 7.11 99.48 0.71 -13.58 16 33 H 0.18 6.67 8.06 -2.91 -0.02 6.64 16 34 H 0.14 7.92 8.06 -2.91 -0.02 7.89 16 35 H 0.18 8.54 8.06 -2.91 -0.02 8.52 16 36 H 0.10 6.08 8.10 -2.39 -0.02 6.06 16 37 H 0.10 5.59 6.96 -2.39 -0.02 5.57 16 38 H 0.06 4.12 8.14 -2.39 -0.02 4.10 16 39 H 0.09 6.02 7.98 -2.39 -0.02 6.00 16 40 H 0.20 9.79 6.63 -2.91 -0.02 9.77 16 41 H 0.19 8.25 8.06 -2.91 -0.02 8.23 16 42 H 0.10 7.53 5.41 -2.39 -0.01 7.52 16 43 H 0.05 4.00 8.13 -2.39 -0.02 3.99 16 Total: -2.00 -208.32 387.64 4.71 -203.62 By element: Atomic # 1 Polarization: 82.36 SS G_CDS: 0.49 Total: 82.86 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: 4.31 Total: 33.12 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -1.65 Total: -48.01 kcal Atomic # 8 Polarization: -298.38 SS G_CDS: -0.65 Total: -299.03 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: 2.20 Total: 27.46 kcal Total: -208.32 4.71 -203.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_14316468_15608776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.225 kcal (2) G-P(sol) polarization free energy of solvation -208.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -203.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds