Wall clock time and date at job start Mon Mar 8 2021 13:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34945 * 116.99551 * 2 1 4 4 O 1.21664 * 120.00513 * 0.02562 * 3 2 1 5 5 C 1.46286 * 119.99987 * 180.02562 * 3 2 1 6 6 C 1.37977 * 125.82675 * 180.28154 * 5 3 2 7 7 C 1.39602 * 106.89442 * 179.97438 * 6 5 3 8 8 C 1.38047 * 106.93899 * 0.02562 * 7 6 5 9 9 C 1.46721 * 125.78355 * 180.02562 * 8 7 6 10 10 C 1.35367 * 119.99534 * 179.97438 * 9 8 7 11 11 C 1.47083 * 120.00098 * 173.21225 * 10 9 8 12 12 C 1.39881 * 120.17042 * 352.25769 * 11 10 9 13 13 C 1.37895 * 119.81443 * 180.02562 * 12 11 10 14 14 C 1.38383 * 120.18288 * 0.02562 * 13 12 11 15 15 C 1.38439 * 120.35387 * 359.97438 * 14 13 12 16 Xx 1.80996 * 119.91116 * 180.02562 * 15 14 13 17 16 F 9.13645 * 103.15838 * 358.91320 * 8 1 2 18 17 F 1.61010 * 90.00256 * 315.00074 * 16 15 14 19 18 F 1.60997 * 89.99867 * 135.00083 * 16 15 14 20 19 F 1.60997 * 90.00189 * 45.00023 * 16 15 14 21 20 F 1.61004 * 90.00225 * 225.00174 * 16 15 14 22 21 C 1.37857 * 120.17657 * 359.72164 * 15 14 13 23 22 O 1.35789 * 120.00596 * 359.97438 * 9 8 7 24 23 C 1.35877 * 117.99786 * 64.42804 * 23 9 8 25 24 C 1.38748 * 120.05691 * 6.04815 * 24 23 9 26 25 C 1.38156 * 119.93711 * 179.97438 * 25 24 23 27 26 C 1.38244 * 120.05951 * 359.97438 * 26 25 24 28 27 C 1.38295 * 120.12180 * 0.02774 * 27 26 25 29 28 C 1.38108 * 120.05726 * 359.67210 * 28 27 26 30 29 C 1.50700 * 120.03203 * 180.02562 * 29 28 27 31 30 O 1.42905 * 109.46705 * 255.00049 * 30 29 28 32 31 Si 1.86299 * 109.47036 * 14.99846 * 30 29 28 33 32 H 1.48502 * 109.47166 * 60.00316 * 32 30 29 34 33 H 1.48507 * 109.47047 * 180.02562 * 32 30 29 35 34 H 1.48504 * 109.47280 * 300.00259 * 32 30 29 36 35 O 1.34513 * 108.42769 * 359.73134 * 8 7 6 37 36 H 1.08998 * 109.47185 * 299.99999 * 1 2 3 38 37 H 1.09002 * 109.47123 * 60.00204 * 1 2 3 39 38 H 1.09000 * 109.46788 * 179.97438 * 1 2 3 40 39 H 1.08000 * 126.55415 * 359.97438 * 6 5 3 41 40 H 1.07992 * 126.53262 * 179.97438 * 7 6 5 42 41 H 1.08004 * 120.00560 * 353.20949 * 10 9 8 43 42 H 1.07997 * 120.08939 * 359.97438 * 12 11 10 44 43 H 1.08011 * 119.90454 * 180.02562 * 13 12 11 45 44 H 1.07997 * 119.82713 * 179.97438 * 14 13 12 46 45 H 1.07997 * 120.08900 * 180.02562 * 22 15 14 47 46 H 1.07998 * 120.02962 * 359.97438 * 25 24 23 48 47 H 1.08003 * 119.97003 * 179.97438 * 26 25 24 49 48 H 1.08004 * 119.93950 * 179.97438 * 27 26 25 50 49 H 1.08003 * 119.96990 * 179.97438 * 28 27 26 51 50 H 1.08997 * 109.47342 * 135.00496 * 30 29 28 52 51 H 0.96704 * 114.00009 * 60.00197 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2024 0.0000 4 8 1.3789 2.2228 0.0005 5 6 3.5024 1.2791 -0.0006 6 6 4.2503 2.4386 0.0049 7 6 5.5927 2.0555 0.0026 8 6 5.6171 0.6752 -0.0047 9 6 6.8223 -0.1615 -0.0088 10 6 6.7095 -1.5105 -0.0154 11 6 7.9087 -2.3480 -0.1701 12 6 9.1420 -1.7609 -0.4717 13 6 10.2615 -2.5531 -0.6156 14 6 10.1671 -3.9252 -0.4630 15 6 8.9502 -4.5139 -0.1644 16 9 8.7437 -7.9065 0.2237 17 9 9.7356 -6.5101 -1.2901 18 9 7.9458 -6.1093 1.3565 19 9 10.1754 -6.2921 0.9333 20 9 7.5058 -6.3274 -0.8668 21 6 7.8229 -3.7353 -0.0112 22 8 8.0507 0.4171 -0.0059 23 6 8.4070 1.1520 1.0800 24 6 7.5809 1.1915 2.1940 25 6 7.9459 1.9391 3.2969 26 6 9.1333 2.6471 3.2915 27 6 9.9586 2.6095 2.1824 28 6 9.6015 1.8588 1.0796 29 6 10.5016 1.8178 -0.1284 30 8 9.9391 2.6198 -1.1689 31 14 12.1823 2.4803 0.3267 32 1 12.7667 1.6468 1.4079 33 1 13.0690 2.4405 -0.8639 34 1 12.0506 3.8822 0.7986 35 8 4.3486 0.2276 -0.0009 36 1 -0.3633 0.5138 0.8900 37 1 -0.3633 0.5138 -0.8900 38 1 -0.3633 -1.0277 -0.0005 39 1 3.8699 3.4493 0.0099 40 1 6.4490 2.7135 0.0052 41 1 5.7390 -1.9719 0.0928 42 1 9.2170 -0.6903 -0.5923 43 1 11.2147 -2.1013 -0.8481 44 1 11.0475 -4.5402 -0.5773 45 1 6.8744 -4.1960 0.2221 46 1 6.6534 0.6383 2.1989 47 1 7.3030 1.9706 4.1642 48 1 9.4165 3.2312 4.1546 49 1 10.8855 3.1639 2.1807 50 1 10.5981 0.7889 -0.4749 51 1 9.8242 3.5499 -0.9300 RHF calculation, no. of doubly occupied orbitals= 86 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_14392048_13158274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:00:40 Heat of formation + Delta-G solvation = 342.527144 kcal Electronic energy + Delta-G solvation = -49623.003959 eV Core-core repulsion = 42592.987635 eV Total energy + Delta-G solvation = -7030.016324 eV No. of doubly occupied orbitals = 86 Molecular weight (most abundant/longest-lived isotopes) = 474.115 amu Computer time = 27.26 seconds Orbital eigenvalues (eV) -44.37594 -44.25929 -44.13469 -44.04966 -43.98576 -43.58981 -42.30191 -41.49704 -40.91075 -39.39037 -37.92713 -37.43491 -35.28945 -34.42936 -32.94530 -32.64957 -32.27311 -31.27025 -30.16464 -28.55134 -26.72115 -26.01493 -24.59713 -23.99537 -23.89067 -22.72103 -22.57439 -22.14410 -21.15042 -20.10601 -19.48460 -18.51785 -18.27712 -18.07754 -17.98968 -17.72129 -17.28737 -17.10639 -16.90968 -16.65637 -16.19668 -15.92429 -15.66179 -15.55966 -15.36902 -15.25895 -15.15826 -15.12637 -14.96161 -14.76152 -14.72682 -14.54396 -14.47846 -14.42010 -14.39349 -14.35047 -14.29627 -14.17433 -14.13813 -14.01538 -13.88882 -13.78197 -13.64985 -13.57922 -13.49097 -13.16797 -13.05655 -12.92254 -12.64113 -12.46637 -12.28656 -12.14768 -12.11208 -12.02879 -11.92842 -11.88101 -11.78937 -11.56865 -11.42552 -11.32812 -10.86040 -10.61845 -10.29502 -9.98605 -9.40827 -9.12405 -5.25159 -4.80183 -3.16715 -1.40743 -0.69059 -0.44326 0.19879 0.22139 0.42836 0.84562 1.19040 1.26945 1.53916 1.57107 1.60816 1.64740 1.91073 2.04134 2.19643 2.53763 2.65361 2.77456 3.14359 3.32750 3.33913 3.53155 3.53858 3.62390 3.66191 3.75657 3.86672 3.91510 4.01293 4.17485 4.19489 4.22678 4.24404 4.27065 4.28609 4.33598 4.36988 4.43719 4.52721 4.58618 4.62528 4.68207 4.72082 4.83883 4.90577 4.95858 5.04768 5.05034 5.07631 5.25729 5.35199 5.43766 5.52067 5.73387 6.20016 6.38313 6.81819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.550 3.450 4 O -0.506 6.506 5 C -0.074 4.074 6 C -0.090 4.090 7 C -0.167 4.167 8 C 0.031 3.969 9 C 0.138 3.862 10 C -0.079 4.079 11 C 0.003 3.997 12 C -0.090 4.090 13 C -0.035 4.035 14 C -0.106 4.106 15 C 0.330 3.670 16 F -0.210 7.210 17 F -0.161 7.161 18 F -0.165 7.165 19 F -0.155 7.155 20 F -0.173 7.173 21 C -0.105 4.105 22 O -0.221 6.221 23 C 0.118 3.882 24 C -0.187 4.187 25 C -0.082 4.082 26 C -0.137 4.137 27 C -0.098 4.098 28 C -0.135 4.135 29 C -0.069 4.069 30 O -0.544 6.544 31 Si 0.966 3.034 32 H -0.253 1.253 33 H -0.275 1.275 34 H -0.254 1.254 35 O -0.138 6.138 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.206 0.794 43 H 0.229 0.771 44 H 0.193 0.807 45 H 0.187 0.813 46 H 0.129 0.871 47 H 0.139 0.861 48 H 0.144 0.856 49 H 0.143 0.857 50 H 0.133 0.867 51 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 14.669 1.257 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.396 3.604 4 O -0.397 6.397 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.186 4.186 8 C -0.022 4.022 9 C 0.095 3.905 10 C -0.098 4.098 11 C 0.002 3.998 12 C -0.106 4.106 13 C -0.051 4.051 14 C -0.123 4.123 15 C 0.326 3.674 16 F -0.210 7.210 17 F -0.160 7.160 18 F -0.163 7.163 19 F -0.154 7.154 20 F -0.172 7.172 21 C -0.123 4.123 22 O -0.133 6.133 23 C 0.077 3.923 24 C -0.205 4.205 25 C -0.100 4.100 26 C -0.155 4.155 27 C -0.116 4.116 28 C -0.136 4.136 29 C -0.180 4.180 30 O -0.351 6.351 31 Si 0.791 3.209 32 H -0.177 1.177 33 H -0.200 1.200 34 H -0.178 1.178 35 O -0.034 6.034 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.200 0.800 40 H 0.199 0.801 41 H 0.194 0.806 42 H 0.221 0.779 43 H 0.245 0.755 44 H 0.210 0.790 45 H 0.204 0.796 46 H 0.147 0.853 47 H 0.157 0.843 48 H 0.162 0.838 49 H 0.160 0.840 50 H 0.151 0.849 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.981 14.410 1.006 14.983 hybrid contribution -1.402 -1.329 0.578 2.016 sum 2.579 13.080 1.584 13.426 Atomic orbital electron populations 1.23317 0.74261 1.06177 1.03023 1.86245 1.25560 1.31247 1.83439 1.19320 0.85853 0.82246 0.72995 1.90986 1.64853 1.36504 1.47357 1.21044 0.87500 0.86289 1.17566 1.22417 0.92198 0.99132 0.97144 1.22332 0.98058 0.93184 1.05029 1.21280 0.82572 0.93242 1.05068 1.17775 0.80331 0.88683 1.03733 1.22385 0.98687 0.89750 0.98934 1.18668 0.95223 0.85389 1.00473 1.23388 0.90252 1.04668 0.92326 1.22094 1.02828 0.84358 0.95837 1.22507 0.96616 0.94579 0.98629 1.27421 0.97237 0.30966 1.11782 1.99999 1.96900 1.92974 1.31100 1.99924 1.99116 1.97823 1.19101 1.99918 1.98896 1.85731 1.31801 1.99919 1.82399 1.88685 1.44358 1.99923 1.85229 1.97236 1.34807 1.21987 1.00264 0.89792 1.00223 1.84365 1.26616 1.62725 1.39626 1.18849 0.94579 0.93599 0.85288 1.21448 1.00996 1.03941 0.94135 1.21258 0.96548 0.94479 0.97763 1.21391 0.94510 1.00363 0.99192 1.21217 1.00323 0.97449 0.92582 1.19713 0.95518 1.00232 0.98151 1.24881 1.03781 1.01549 0.87807 1.86546 1.85525 1.24872 1.38141 0.85442 0.75371 0.80729 0.79347 1.17710 1.20012 1.17766 1.84146 1.14682 1.34355 1.70185 0.91486 0.91560 0.84930 0.79975 0.80098 0.80608 0.77858 0.75465 0.79003 0.79596 0.85326 0.84288 0.83830 0.83958 0.84905 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 262. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.45 113.37 1.18 1.11 16 2 O -0.35 -0.77 10.48 -57.10 -0.60 -1.37 16 3 C 0.55 2.12 7.91 69.91 0.55 2.67 16 4 O -0.51 -4.10 16.64 19.30 0.32 -3.78 16 5 C -0.07 -0.04 7.20 24.30 0.17 0.14 16 6 C -0.09 0.28 10.63 22.54 0.24 0.52 16 7 C -0.17 0.99 9.28 22.55 0.21 1.20 16 8 C 0.03 -0.17 5.71 24.44 0.14 -0.03 16 9 C 0.14 -1.19 4.83 23.82 0.12 -1.08 16 10 C -0.08 0.80 9.57 23.93 0.23 1.03 16 11 C 0.00 -0.03 5.86 -20.15 -0.12 -0.15 16 12 C -0.09 1.26 9.08 22.59 0.20 1.46 16 13 C -0.03 0.57 10.03 22.22 0.22 0.79 16 14 C -0.11 0.91 8.62 22.35 0.19 1.11 16 15 C 0.33 -0.16 4.82 22.23 0.11 -0.06 16 16 F -0.21 -5.51 16.67 44.97 0.75 -4.76 16 17 F -0.16 -2.45 15.33 44.97 0.69 -1.76 16 18 F -0.16 -2.62 15.26 44.97 0.69 -1.93 16 19 F -0.15 -2.30 15.28 44.97 0.69 -1.61 16 20 F -0.17 -2.83 15.33 44.97 0.69 -2.14 16 21 C -0.11 0.56 8.36 22.58 0.19 0.75 16 22 O -0.22 2.24 5.20 -34.36 -0.18 2.06 16 23 C 0.12 -1.10 5.65 22.52 0.13 -0.97 16 24 C -0.19 1.52 7.99 22.37 0.18 1.70 16 25 C -0.08 0.70 10.04 22.25 0.22 0.93 16 26 C -0.14 1.28 10.04 22.28 0.22 1.51 16 27 C -0.10 0.98 8.66 22.25 0.19 1.17 16 28 C -0.14 1.40 5.27 -19.76 -0.10 1.29 16 29 C -0.07 0.83 2.37 71.24 0.17 1.00 16 30 O -0.54 5.40 12.88 -148.98 -1.92 3.48 16 31 Si 0.97 -9.71 25.49 68.60 1.75 -7.96 16 32 H -0.25 2.23 7.11 99.48 0.71 2.94 16 33 H -0.27 1.55 7.11 99.48 0.71 2.26 16 34 H -0.25 2.39 6.74 99.48 0.67 3.06 16 35 O -0.14 0.22 10.32 -10.89 -0.11 0.10 16 36 H 0.07 -0.20 8.13 -2.39 -0.02 -0.22 16 37 H 0.07 -0.19 8.13 -2.39 -0.02 -0.20 16 38 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 39 H 0.18 -1.01 8.06 -2.91 -0.02 -1.03 16 40 H 0.18 -1.62 7.54 -2.91 -0.02 -1.64 16 41 H 0.18 -2.09 7.81 -2.91 -0.02 -2.12 16 42 H 0.21 -3.20 3.30 -30.68 -0.10 -3.31 16 43 H 0.23 -5.76 8.06 -2.91 -0.02 -5.78 16 44 H 0.19 -1.84 7.38 -2.91 -0.02 -1.86 16 45 H 0.19 -0.99 7.39 -2.91 -0.02 -1.01 16 46 H 0.13 -1.02 6.07 -2.91 -0.02 -1.03 16 47 H 0.14 -1.46 8.06 -2.91 -0.02 -1.48 16 48 H 0.14 -1.74 8.06 -2.91 -0.02 -1.76 16 49 H 0.14 -1.73 4.89 -2.91 -0.01 -1.74 16 50 H 0.13 -2.16 6.51 -2.39 -0.02 -2.17 16 51 H 0.39 -5.89 8.70 -74.05 -0.64 -6.54 16 Total: 0.00 -36.78 458.41 8.47 -28.31 By element: Atomic # 1 Polarization: -25.80 SS G_CDS: 1.05 Total: -24.75 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 4.65 Total: 16.10 kcal Atomic # 8 Polarization: 2.98 SS G_CDS: -2.49 Total: 0.50 kcal Atomic # 9 Polarization: -15.70 SS G_CDS: 3.50 Total: -12.20 kcal Atomic # 14 Polarization: -9.71 SS G_CDS: 1.75 Total: -7.96 kcal Total: -36.78 8.47 -28.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_14392048_13158274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 370.840 kcal (2) G-P(sol) polarization free energy of solvation -36.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 334.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 342.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.26 seconds