Wall clock time and date at job start Mon Mar 8 2021 12:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.34441 * 125.32228 * 245.30475 * 7 2 1 9 9 C 1.42053 * 107.61107 * 179.97438 * 8 7 2 10 10 C 1.46377 * 126.74453 * 180.02562 * 9 8 7 11 11 O 1.22472 * 119.99864 * 359.97438 * 10 9 8 12 12 O 1.22469 * 119.99673 * 179.97438 * 10 9 8 13 13 C 1.39970 * 106.51711 * 359.97438 * 9 8 7 14 14 C 1.46211 * 126.32317 * 180.02562 * 13 9 8 15 15 C 1.34895 * 120.00353 * 180.02562 * 14 13 9 16 16 C 1.47173 * 120.00310 * 179.97438 * 15 14 13 17 17 C 1.39831 * 120.17398 * 180.27521 * 16 15 14 18 18 C 1.37905 * 119.82811 * 179.97438 * 17 16 15 19 Xx 1.81001 * 119.91657 * 180.02562 * 18 17 16 20 19 F 9.12652 * 108.41288 * 235.22876 * 13 1 2 21 20 F 1.60998 * 89.99956 * 134.99524 * 19 18 17 22 21 F 1.60996 * 89.99726 * 314.99906 * 19 18 17 23 22 F 1.60995 * 90.00183 * 224.99703 * 19 18 17 24 23 F 1.61005 * 89.99944 * 45.00018 * 19 18 17 25 24 C 1.38382 * 120.17120 * 359.97438 * 18 17 16 26 25 C 1.38428 * 120.34919 * 0.04591 * 25 18 17 27 26 C 1.37868 * 120.16873 * 359.69878 * 26 25 18 28 27 N 1.36519 * 107.35953 * 359.74459 * 13 9 8 29 28 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 30 29 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 31 30 H 1.07998 * 126.19730 * 359.97438 * 8 7 2 32 31 H 1.08004 * 119.99158 * 0.02562 * 14 13 9 33 32 H 1.08005 * 119.99918 * 0.02562 * 15 14 13 34 33 H 1.08005 * 120.08424 * 359.96048 * 17 16 15 35 34 H 1.08004 * 119.83020 * 180.02562 * 25 18 17 36 35 H 1.07998 * 119.91396 * 179.97438 * 26 25 18 37 36 H 1.07995 * 120.08863 * 180.02562 * 27 26 25 38 37 H 0.96999 * 125.42204 * 180.02562 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.6225 -0.1375 2.2311 9 6 2.9028 -1.1455 3.1920 10 6 3.6343 -0.9781 4.4488 11 8 4.0753 0.1217 4.7588 12 8 3.8054 -1.9377 5.1902 13 6 2.3410 -2.3300 2.7017 14 6 2.3756 -3.6390 3.3520 15 6 1.7898 -4.7012 2.7618 16 6 1.8251 -6.0189 3.4162 17 6 1.2240 -7.1236 2.8049 18 6 1.2618 -8.3552 3.4242 19 9 -0.2063 -11.0600 1.9330 20 9 1.7805 -10.6790 2.9783 21 9 -0.8101 -8.8945 2.2911 22 9 -0.1759 -10.2044 4.0420 23 9 1.1462 -9.3693 1.2272 24 6 1.8930 -8.4996 4.6472 25 6 2.4901 -7.4108 5.2590 26 6 2.4653 -6.1741 4.6501 27 7 1.7493 -2.0361 1.5070 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 2.9122 0.9010 2.2933 31 1 2.8703 -3.7555 4.3050 32 1 1.2955 -4.5847 1.8086 33 1 0.7312 -7.0124 1.8503 34 1 1.9197 -9.4668 5.1271 35 1 2.9804 -7.5314 6.2137 36 1 2.9319 -5.3257 5.1284 37 1 1.2801 -2.6691 0.9412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_16734034_13158274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:11:49 Heat of formation + Delta-G solvation = 251.727456 kcal Electronic energy + Delta-G solvation = -31767.374124 eV Core-core repulsion = 26142.994442 eV Total energy + Delta-G solvation = -5624.379682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.072 amu Computer time = 37.64 seconds Orbital eigenvalues (eV) -44.32600 -44.18466 -44.13010 -44.03729 -43.47502 -42.25077 -41.00033 -39.05316 -37.67022 -35.89055 -34.66798 -32.74109 -32.27312 -31.82064 -29.88162 -26.44911 -24.80026 -24.00917 -23.15377 -21.54846 -20.79485 -19.51599 -18.51405 -18.34132 -17.46904 -16.64207 -16.41363 -16.31712 -15.92910 -15.78275 -15.50070 -15.36090 -15.27588 -15.16957 -15.14917 -14.93404 -14.70755 -14.69451 -14.49055 -14.38613 -14.23641 -14.10447 -14.07845 -13.98998 -13.84881 -13.63170 -13.62140 -13.55996 -13.37633 -12.96585 -12.57249 -12.28593 -12.22968 -12.07372 -12.03062 -11.85275 -11.76006 -11.35444 -10.79002 -10.62237 -10.26018 -10.22585 -10.12227 -9.85615 -9.69768 -8.53319 -5.20809 -4.74756 -3.13011 -0.97492 -0.59484 0.37551 1.12360 1.39762 1.54148 1.58155 1.72542 2.01300 2.25876 2.25980 2.73219 2.94035 3.40180 3.44775 3.51459 3.59846 3.69037 3.74432 3.75583 4.14680 4.19884 4.28217 4.40460 4.42476 4.53822 4.61484 4.74077 4.83223 4.88082 5.09293 5.15790 5.28646 5.40479 5.78235 5.95587 6.60186 6.62301 8.05176 8.46659 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002339 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.224001 B =11967.154899 C =13727.881895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.046 4.046 3 Si 1.000 3.000 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.239 1.239 7 C 0.007 3.993 8 C -0.186 4.186 9 C -0.226 4.226 10 C 0.525 3.475 11 O -0.741 6.741 12 O -0.716 6.716 13 C 0.068 3.932 14 C -0.022 4.022 15 C -0.141 4.141 16 C 0.030 3.970 17 C -0.115 4.115 18 C 0.337 3.663 19 F -0.221 7.221 20 F -0.156 7.156 21 F -0.166 7.166 22 F -0.157 7.157 23 F -0.165 7.165 24 C -0.112 4.112 25 C -0.020 4.020 26 C -0.102 4.102 27 N -0.511 5.511 28 H 0.391 0.609 29 H 0.144 0.856 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.183 0.817 34 H 0.192 0.808 35 H 0.225 0.775 36 H 0.176 0.824 37 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -7.205 -6.461 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.156 4.156 3 Si 0.823 3.177 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.162 1.162 7 C -0.107 4.107 8 C -0.210 4.210 9 C -0.235 4.235 10 C 0.366 3.634 11 O -0.660 6.660 12 O -0.634 6.634 13 C -0.047 4.047 14 C -0.041 4.041 15 C -0.160 4.160 16 C 0.030 3.970 17 C -0.133 4.133 18 C 0.333 3.667 19 F -0.221 7.221 20 F -0.155 7.155 21 F -0.164 7.164 22 F -0.155 7.155 23 F -0.164 7.164 24 C -0.130 4.130 25 C -0.037 4.037 26 C -0.119 4.119 27 N -0.109 5.109 28 H 0.240 0.760 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.200 0.800 34 H 0.209 0.791 35 H 0.241 0.759 36 H 0.193 0.807 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.122 -6.679 -6.779 10.808 hybrid contribution -0.856 -1.311 -0.208 1.580 sum -5.979 -7.991 -6.987 12.182 Atomic orbital electron populations 1.86422 1.16748 1.81972 1.50092 1.24763 0.85049 1.10461 0.95376 0.84969 0.79109 0.73534 0.80045 1.19629 1.19880 1.16247 1.21035 1.05581 0.84461 0.99608 1.20857 1.05311 0.99345 0.95466 1.22106 1.06778 0.94321 1.00302 1.16599 0.78153 0.84839 0.83851 1.90700 1.61587 1.33413 1.80341 1.90571 1.69171 1.46008 1.57643 1.19328 1.02260 0.94457 0.88662 1.21840 0.95377 0.87715 0.99132 1.21688 1.04137 0.88839 1.01369 1.18726 0.95143 0.89450 0.93687 1.21752 1.02124 0.84842 1.04541 1.27453 0.96057 0.56225 0.87005 2.00000 1.93167 1.77119 1.51820 1.99918 1.72143 1.85097 1.58320 1.99920 1.86528 1.51819 1.78153 1.99918 1.97212 1.91749 1.26643 1.99920 1.99800 1.63515 1.53131 1.22264 0.96452 1.04438 0.89821 1.21861 0.94968 0.86063 1.00807 1.22489 0.95682 1.00385 0.93375 1.41727 1.43112 1.09138 1.16936 0.75967 0.83870 0.85396 0.83610 0.83371 0.79983 0.79062 0.75887 0.80717 0.72579 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 746. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -9.75 12.88 -148.98 -1.92 -11.67 16 2 C -0.05 -0.90 3.08 71.23 0.22 -0.68 16 3 Si 1.00 20.94 25.81 68.60 1.77 22.71 16 4 H -0.27 -6.81 7.11 99.48 0.71 -6.11 16 5 H -0.27 -7.01 7.11 99.48 0.71 -6.30 16 6 H -0.24 -4.25 7.11 99.48 0.71 -3.54 16 7 C 0.01 0.21 6.45 40.94 0.26 0.47 16 8 C -0.19 -7.54 9.13 22.35 0.20 -7.33 16 9 C -0.23 -11.00 6.19 -19.79 -0.12 -11.12 16 10 C 0.53 33.19 8.02 69.94 0.56 33.75 16 11 O -0.74 -52.78 17.83 17.19 0.31 -52.47 16 12 O -0.72 -45.57 15.79 17.20 0.27 -45.30 16 13 C 0.07 2.42 6.97 40.91 0.28 2.70 16 14 C -0.02 -0.64 9.03 23.57 0.21 -0.43 16 15 C -0.14 -2.64 9.56 23.85 0.23 -2.41 16 16 C 0.03 0.46 5.87 -20.15 -0.12 0.34 16 17 C -0.12 -1.84 8.36 22.58 0.19 -1.65 16 18 C 0.34 6.31 4.82 22.23 0.11 6.42 16 19 F -0.22 -8.97 16.66 44.97 0.75 -8.22 16 20 F -0.16 -4.80 15.30 44.97 0.69 -4.11 16 21 F -0.17 -5.35 15.30 44.97 0.69 -4.66 16 22 F -0.16 -4.82 15.30 44.97 0.69 -4.13 16 23 F -0.17 -5.32 15.30 44.97 0.69 -4.63 16 24 C -0.11 -1.27 8.62 22.35 0.19 -1.08 16 25 C -0.02 -0.14 10.03 22.23 0.22 0.09 16 26 C -0.10 -1.27 9.41 22.58 0.21 -1.06 16 27 N -0.51 -13.51 5.93 -171.52 -1.02 -14.52 16 28 H 0.39 5.32 8.70 -74.06 -0.64 4.68 16 29 H 0.14 2.05 7.96 -2.39 -0.02 2.03 16 30 H 0.13 5.35 6.15 -2.91 -0.02 5.33 16 31 H 0.15 4.88 4.38 -2.91 -0.01 4.87 16 32 H 0.15 1.97 7.03 -2.91 -0.02 1.95 16 33 H 0.18 2.72 7.39 -2.91 -0.02 2.70 16 34 H 0.19 1.68 7.38 -2.91 -0.02 1.66 16 35 H 0.22 -0.33 8.06 -2.91 -0.02 -0.36 16 36 H 0.18 2.53 6.17 -2.91 -0.02 2.51 16 37 H 0.43 7.55 7.96 -92.71 -0.74 6.82 16 Total: -1.00 -98.92 354.13 6.16 -92.77 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.58 Total: 16.22 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 2.66 Total: 18.02 kcal Atomic # 7 Polarization: -13.51 SS G_CDS: -1.02 Total: -14.52 kcal Atomic # 8 Polarization: -108.10 SS G_CDS: -1.34 Total: -109.44 kcal Atomic # 9 Polarization: -29.25 SS G_CDS: 3.50 Total: -25.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: 1.77 Total: 22.71 kcal Total: -98.92 6.16 -92.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_16734034_13158274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 344.493 kcal (2) G-P(sol) polarization free energy of solvation -98.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 245.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 251.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.64 seconds