Wall clock time and date at job start Mon Mar 8 2021 13:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34222 * 116.99997 * 2 1 4 4 O 1.20822 * 120.00243 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00023 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.85016 * 48.80000 * 5 3 2 7 7 C 1.53781 * 113.61418 * 179.97438 * 5 3 2 8 8 C 1.53775 * 87.07935 * 140.06297 * 7 5 3 9 9 H 1.08999 * 113.61459 * 219.93105 * 8 7 5 10 10 N 1.46506 * 113.61548 * 89.11685 * 8 7 5 11 11 C 1.35142 * 125.88532 * 274.99836 * 10 8 7 12 12 C 1.34929 * 108.09310 * 179.97438 * 11 10 8 13 13 C 1.41267 * 107.83925 * 0.02562 * 12 11 10 14 14 C 1.47185 * 126.10093 * 179.97438 * 13 12 11 15 15 C 1.34913 * 120.00254 * 179.97438 * 14 13 12 16 16 C 1.46177 * 120.00465 * 179.97438 * 15 14 13 17 17 C 1.40070 * 126.20973 * 179.71477 * 16 15 14 18 18 C 1.46303 * 127.08791 * 0.02562 * 17 16 15 19 19 O 1.22491 * 119.99773 * 179.97438 * 18 17 16 20 20 O 1.22481 * 120.00421 * 359.97438 * 18 17 16 21 21 C 1.46543 * 105.82015 * 179.86863 * 17 16 15 22 22 C 1.34489 * 106.83239 * 0.39916 * 21 17 16 23 23 C 1.50705 * 125.18731 * 179.76985 * 22 21 17 24 24 O 1.42908 * 109.47008 * 244.97870 * 23 22 21 25 25 Si 1.86301 * 109.47280 * 4.97949 * 23 22 21 26 26 N 1.36384 * 126.20183 * 0.03437 * 16 15 14 27 27 N 1.32049 * 107.79932 * 359.75416 * 13 12 11 28 28 C 1.53777 * 87.08466 * 334.56745 * 8 7 5 29 29 H 1.09005 * 109.46543 * 60.00574 * 1 2 3 30 30 H 1.09005 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47353 * 300.00364 * 1 2 3 32 32 H 1.09004 * 113.61633 * 25.51324 * 7 5 3 33 33 H 1.09000 * 113.61389 * 254.61189 * 7 5 3 34 34 H 1.07997 * 125.95299 * 359.96794 * 11 10 8 35 35 H 1.07998 * 126.08009 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.99868 * 0.02562 * 14 13 12 37 37 H 1.08009 * 119.99668 * 0.02562 * 15 14 13 38 38 H 1.07998 * 126.58549 * 180.15293 * 21 17 16 39 39 H 1.08993 * 109.47111 * 124.98046 * 23 22 21 40 40 H 0.96702 * 113.99840 * 60.00623 * 24 23 22 41 41 H 1.48499 * 109.99776 * 58.68065 * 25 23 22 42 42 H 1.48496 * 109.99879 * 180.02562 * 25 23 22 43 43 H 0.96996 * 124.93428 * 359.97087 * 26 16 15 44 44 H 1.09000 * 113.62016 * 139.98264 * 28 8 7 45 45 H 1.09000 * 113.61600 * 270.88290 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0240 0.6361 -0.7549 7 6 4.1078 2.7142 -0.0001 8 6 5.1819 2.2269 0.9865 9 1 5.3988 2.9391 1.7826 10 7 6.3908 1.7178 0.3338 11 6 6.5726 0.4604 -0.1268 12 6 7.8101 0.3840 -0.6591 13 6 8.4198 1.6508 -0.5205 14 6 9.7749 2.0144 -0.9654 15 6 10.2355 3.2673 -0.7703 16 6 11.5815 3.6283 -1.2116 17 6 12.1860 4.8851 -1.0807 18 6 11.6038 6.0860 -0.4812 19 8 12.2533 7.1235 -0.4342 20 8 10.4670 6.0540 -0.0265 21 6 13.5231 4.7480 -1.6645 22 6 13.6306 3.4794 -2.0979 23 6 14.8426 2.8928 -2.7748 24 8 14.5129 2.5396 -4.1197 25 14 16.2187 4.1486 -2.7820 26 7 12.4743 2.8041 -1.8309 27 7 7.5554 2.4518 0.0751 28 6 4.1925 1.1236 1.3970 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.4177 3.4405 0.4293 33 1 4.5100 3.0289 -0.9631 34 1 5.8529 -0.3433 -0.0773 35 1 8.2553 -0.4901 -1.1109 36 1 10.4002 1.2783 -1.4487 37 1 9.6099 4.0035 -0.2873 38 1 14.2760 5.5189 -1.7367 39 1 15.1655 2.0030 -2.2343 40 1 14.2167 3.2845 -4.6606 41 1 16.5492 4.5478 -1.3904 42 1 17.4195 3.5823 -3.4473 43 1 12.3117 1.8732 -2.0497 44 1 4.6629 0.1543 1.5620 45 1 3.5255 1.4151 2.2084 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_16734034_15431852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:31:36 Heat of formation + Delta-G solvation = -110.812435 kcal Electronic energy + Delta-G solvation = -32014.996985 eV Core-core repulsion = 27271.852146 eV Total energy + Delta-G solvation = -4743.144839 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.132 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.58576 -41.98861 -41.56723 -39.42734 -39.06129 -37.62969 -37.46238 -35.43071 -34.62731 -32.34716 -31.72478 -31.12543 -30.26006 -29.23254 -27.25407 -27.01377 -26.14238 -24.54903 -23.37725 -22.37744 -21.64218 -21.36768 -20.57049 -20.05432 -19.34794 -19.00456 -18.41952 -18.03540 -17.67021 -17.49446 -17.04713 -16.37259 -16.05469 -16.02476 -15.76271 -15.67024 -15.50811 -15.47652 -15.20949 -14.93729 -14.59639 -14.52252 -14.43699 -14.18321 -14.06242 -13.86621 -13.61343 -13.51672 -13.27416 -13.06879 -12.86473 -12.78850 -12.17358 -12.07538 -11.99538 -11.85011 -11.81867 -11.61010 -11.49254 -11.41377 -10.61361 -10.24090 -10.18205 -10.15196 -9.71437 -9.68567 -9.57084 -8.47352 -4.84427 -0.19029 0.98318 1.05373 1.28291 1.41021 1.43815 1.62804 1.67184 1.68134 1.99653 2.30172 2.44523 2.94020 3.14193 3.36830 3.51744 3.57545 3.68011 3.69520 3.73378 3.79653 3.99992 4.05909 4.23593 4.27638 4.30073 4.31083 4.33991 4.40353 4.47543 4.50513 4.59677 4.63794 4.71202 4.73655 4.77758 4.83301 4.88636 4.94887 4.99573 5.13735 5.29962 5.38460 5.55277 5.65051 5.83230 6.03855 6.18341 6.62569 6.65044 6.70815 6.76634 8.03416 8.46221 Molecular weight = 373.13amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.001681 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.203744 B =16647.888726 C =17754.728015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.536 6.536 5 C -0.104 4.104 6 H 0.146 0.854 7 C -0.130 4.130 8 C 0.122 3.878 9 H 0.109 0.891 10 N -0.358 5.358 11 C 0.060 3.940 12 C -0.259 4.259 13 C 0.080 3.920 14 C -0.086 4.086 15 C -0.058 4.058 16 C 0.086 3.914 17 C -0.247 4.247 18 C 0.524 3.476 19 O -0.739 6.739 20 O -0.727 6.727 21 C -0.175 4.175 22 C 0.007 3.993 23 C -0.039 4.039 24 O -0.548 6.548 25 Si 0.779 3.221 26 N -0.520 5.520 27 N -0.333 5.333 28 C -0.098 4.098 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.223 0.777 35 H 0.180 0.820 36 H 0.160 0.840 37 H 0.113 0.887 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.397 0.603 41 H -0.306 1.306 42 H -0.254 1.254 43 H 0.429 0.571 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -25.436 -4.624 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.320 3.680 4 O -0.426 6.426 5 C -0.122 4.122 6 H 0.164 0.836 7 C -0.169 4.169 8 C 0.020 3.980 9 H 0.127 0.873 10 N -0.140 5.140 11 C -0.084 4.084 12 C -0.288 4.288 13 C -0.082 4.082 14 C -0.106 4.106 15 C -0.081 4.081 16 C -0.029 4.029 17 C -0.256 4.256 18 C 0.365 3.635 19 O -0.658 6.658 20 O -0.646 6.646 21 C -0.199 4.199 22 C -0.106 4.106 23 C -0.149 4.149 24 O -0.355 6.355 25 Si 0.683 3.317 26 N -0.119 5.119 27 N -0.156 5.156 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.198 0.802 36 H 0.178 0.822 37 H 0.131 0.869 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.247 0.753 41 H -0.234 1.234 42 H -0.179 1.179 43 H 0.269 0.731 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.314 -24.177 -3.537 27.826 hybrid contribution -0.667 -0.396 0.214 0.805 sum -13.981 -24.574 -3.323 28.467 Atomic orbital electron populations 1.23570 0.74861 1.05813 1.02453 1.86510 1.24863 1.32474 1.83402 1.23723 0.91933 0.81230 0.71088 1.90685 1.67719 1.37621 1.46576 1.22701 0.86858 1.00120 1.02566 0.83627 1.23388 0.96643 0.96160 1.00681 1.22195 0.80664 0.99359 0.95789 0.87271 1.48527 1.11249 1.08398 1.45868 1.23119 0.99063 0.88835 0.97350 1.21894 0.95938 0.98199 1.12753 1.21155 0.94170 0.93942 0.98922 1.21339 0.92147 0.95195 1.01950 1.21570 0.91129 0.97576 0.97777 1.19266 0.91671 0.89929 1.02013 1.23095 0.97429 0.95970 1.09076 1.16640 0.84047 0.85356 0.77483 1.90653 1.68571 1.37016 1.69551 1.90662 1.25481 1.89466 1.58976 1.21817 0.96404 0.96342 1.05333 1.21086 0.90525 0.92093 1.06878 1.24966 0.97834 1.08097 0.83977 1.86389 1.88895 1.40146 1.20075 0.92686 0.73730 0.82840 0.82475 1.41567 1.11266 1.12600 1.46463 1.77982 0.94427 1.20485 1.22694 1.23302 0.95200 1.00054 0.95033 0.92299 0.84893 0.91870 0.86988 0.91307 0.76061 0.80245 0.82224 0.86932 0.83612 0.85645 0.75300 1.23378 1.17914 0.73067 0.86078 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.64 10.57 -51.34 -0.54 -5.18 16 3 C 0.48 7.71 7.49 71.24 0.53 8.25 16 4 O -0.54 -12.45 15.65 21.98 0.34 -12.11 16 5 C -0.10 -1.30 3.83 -11.01 -0.04 -1.35 16 6 H 0.15 1.32 6.96 -2.39 -0.02 1.31 16 7 C -0.13 -2.47 7.20 31.12 0.22 -2.25 16 8 C 0.12 2.35 5.18 45.51 0.24 2.58 16 9 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 10 N -0.36 -8.99 3.79 -325.15 -1.23 -10.22 16 11 C 0.06 1.07 9.58 83.42 0.80 1.87 16 12 C -0.26 -5.69 10.78 22.25 0.24 -5.45 16 13 C 0.08 2.64 6.98 42.21 0.29 2.94 16 14 C -0.09 -2.92 9.79 23.86 0.23 -2.69 16 15 C -0.06 -2.67 9.28 23.57 0.22 -2.45 16 16 C 0.09 4.02 6.96 40.94 0.29 4.31 16 17 C -0.25 -14.31 6.36 -18.57 -0.12 -14.42 16 18 C 0.52 38.61 8.02 69.92 0.56 39.17 16 19 O -0.74 -58.26 17.87 17.12 0.31 -57.95 16 20 O -0.73 -56.89 15.83 17.16 0.27 -56.62 16 21 C -0.17 -7.98 9.39 23.58 0.22 -7.75 16 22 C 0.01 0.23 6.45 40.97 0.26 0.49 16 23 C -0.04 -0.93 3.08 71.24 0.22 -0.71 16 24 O -0.55 -11.45 12.88 -148.98 -1.92 -13.37 16 25 Si 0.78 17.80 30.52 68.60 2.09 19.90 16 26 N -0.52 -17.91 5.86 -171.59 -1.01 -18.92 16 27 N -0.33 -12.41 12.15 -48.60 -0.59 -13.00 16 28 C -0.10 -0.94 6.87 31.12 0.21 -0.73 16 29 H 0.06 0.59 8.13 -2.38 -0.02 0.57 16 30 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.11 2.20 7.44 -2.38 -0.02 2.19 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.22 1.41 6.63 -2.91 -0.02 1.39 16 35 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.16 3.89 6.99 -2.91 -0.02 3.87 16 37 H 0.11 6.47 6.07 -2.91 -0.02 6.45 16 38 H 0.15 6.37 6.17 -2.91 -0.02 6.35 16 39 H 0.13 2.66 7.96 -2.39 -0.02 2.64 16 40 H 0.40 5.97 8.70 -74.06 -0.64 5.33 16 41 H -0.31 -9.78 7.11 99.48 0.71 -9.08 16 42 H -0.25 -5.71 7.11 99.48 0.71 -5.00 16 43 H 0.43 10.77 7.91 -92.71 -0.73 10.04 16 44 H 0.12 0.61 6.96 -2.39 -0.02 0.59 16 45 H 0.13 0.94 8.10 -2.39 -0.02 0.92 16 Total: -1.00 -112.38 395.77 3.06 -109.33 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.25 Total: 34.90 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 5.58 Total: 23.24 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -2.83 Total: -42.14 kcal Atomic # 8 Polarization: -143.69 SS G_CDS: -1.54 Total: -145.23 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: 2.09 Total: 19.90 kcal Total: -112.38 3.06 -109.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_16734034_15431852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.484 kcal (2) G-P(sol) polarization free energy of solvation -112.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds