Wall clock time and date at job start Mon Mar 8 2021 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00379 * 2 1 4 4 O 1.20826 * 119.99878 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99789 * 180.02562 * 3 2 1 6 6 H 1.08991 * 112.91174 * 48.74396 * 5 3 2 7 7 C 1.53784 * 113.61063 * 179.97438 * 5 3 2 8 8 C 1.53786 * 87.17402 * 139.93519 * 7 5 3 9 9 H 1.08998 * 113.61642 * 220.06617 * 8 7 5 10 10 N 1.46497 * 113.61593 * 89.15253 * 8 7 5 11 11 N 1.40033 * 126.14590 * 294.33174 * 10 8 7 12 12 C 1.30957 * 108.85959 * 179.84904 * 11 10 8 13 13 C 1.39245 * 108.81563 * 0.40975 * 12 11 10 14 14 C 1.36758 * 126.13894 * 114.63256 * 10 8 7 15 15 C 1.46478 * 126.50992 * 0.02562 * 14 10 8 16 16 C 1.35262 * 119.99863 * 185.25650 * 15 14 10 17 17 C 1.41750 * 119.99957 * 185.22664 * 16 15 14 18 18 C 1.40072 * 126.33123 * 179.97438 * 17 16 15 19 19 C 1.46286 * 126.74612 * 359.95955 * 18 17 16 20 20 O 1.22486 * 120.00001 * 179.97438 * 19 18 17 21 21 O 1.22484 * 120.00031 * 0.02562 * 19 18 17 22 22 C 1.42088 * 106.50979 * 179.97438 * 18 17 16 23 23 C 1.34418 * 107.63123 * 0.02562 * 22 18 17 24 24 C 1.50701 * 125.31521 * 180.02562 * 23 22 18 25 25 O 1.42897 * 109.47056 * 119.97124 * 24 23 22 26 26 Si 1.86305 * 109.46733 * 359.97438 * 24 23 22 27 27 N 1.36583 * 126.33239 * 359.69603 * 17 16 15 28 28 C 1.53785 * 113.61134 * 277.48940 * 5 3 2 29 29 H 1.09004 * 109.47207 * 59.99948 * 1 2 3 30 30 H 1.08998 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47192 * 300.00390 * 1 2 3 32 32 H 1.08994 * 113.61514 * 254.52129 * 7 5 3 33 33 H 1.08995 * 113.61575 * 25.34666 * 7 5 3 34 34 H 1.08008 * 125.58875 * 180.14269 * 12 11 10 35 35 H 1.07994 * 126.18686 * 179.78103 * 13 12 11 36 36 H 1.08004 * 120.00074 * 5.24890 * 15 14 10 37 37 H 1.07997 * 119.99506 * 5.23165 * 16 15 14 38 38 H 1.07994 * 126.18384 * 179.97438 * 22 18 17 39 39 H 1.09000 * 109.46972 * 239.97700 * 24 23 22 40 40 H 0.96701 * 114.00105 * 179.97438 * 25 24 23 41 41 H 1.48503 * 110.00033 * 60.00233 * 26 24 23 42 42 H 1.48499 * 109.99579 * 181.31916 * 26 24 23 43 43 H 0.97007 * 125.42275 * 359.97438 * 27 17 16 44 44 H 1.08998 * 113.61614 * 334.57247 * 28 5 3 45 45 H 1.08999 * 113.61226 * 105.47464 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0244 0.6359 -0.7556 7 6 4.1078 2.7140 -0.0011 8 6 5.1818 2.2294 0.9872 9 1 5.3954 2.9419 1.7839 10 7 6.3921 1.7217 0.3364 11 7 6.4798 0.5792 -0.4685 12 6 7.7168 0.4423 -0.8760 13 6 8.4810 1.4795 -0.3476 14 6 7.6404 2.2753 0.4105 15 6 8.0163 3.4811 1.1524 16 6 9.2716 3.9744 1.0498 17 6 9.6686 5.0742 1.8511 18 6 10.9279 5.6875 1.8534 19 6 12.0825 5.3187 1.0344 20 8 13.1308 5.9439 1.1368 21 8 12.0007 4.3852 0.2456 22 6 10.8636 6.7381 2.8079 23 6 9.6269 6.7345 3.3346 24 6 9.1264 7.6876 4.3892 25 8 8.0106 8.4198 3.8786 26 14 10.4877 8.8726 4.8516 27 7 8.8923 5.7353 2.7598 28 6 4.1916 1.1231 1.3962 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.5107 3.0286 -0.9638 33 1 3.4170 3.4406 0.4265 34 1 8.0848 -0.3481 -1.5134 35 1 9.5384 1.6352 -0.5022 36 1 7.2912 3.9763 1.7813 37 1 9.9713 3.5303 0.3573 38 1 11.6639 7.4163 3.0644 39 1 8.8193 7.1252 5.2709 40 1 7.6359 9.0537 4.5055 41 1 10.9154 9.6456 3.6579 42 1 10.0168 9.7975 5.9136 43 1 7.9673 5.5277 2.9658 44 1 3.5243 1.4144 2.2073 45 1 4.6620 0.1538 1.5612 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_16734034_15431928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:31:40 Heat of formation + Delta-G solvation = -108.609892 kcal Electronic energy + Delta-G solvation = -32704.186769 eV Core-core repulsion = 27961.137439 eV Total energy + Delta-G solvation = -4743.049330 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.132 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.44917 -42.22729 -41.55613 -39.31037 -39.05424 -37.82284 -37.44529 -35.75674 -34.62496 -32.76572 -32.07501 -31.48286 -29.45095 -29.30738 -27.10626 -26.94225 -26.25681 -24.45130 -23.53451 -22.68758 -21.68564 -21.41342 -20.89343 -19.50232 -19.29100 -18.93029 -18.55813 -18.04028 -17.87853 -17.54809 -17.48183 -16.25142 -16.06702 -16.03035 -15.95913 -15.63946 -15.47652 -15.40002 -15.16354 -14.98987 -14.65604 -14.49367 -14.35568 -14.30142 -14.20666 -13.76671 -13.62689 -13.47935 -13.20254 -13.10236 -12.86651 -12.77805 -12.49250 -11.99312 -11.94385 -11.87071 -11.85896 -11.79186 -11.68322 -11.34920 -10.59295 -10.22078 -10.14266 -10.12046 -9.85094 -9.70303 -9.58343 -8.33990 -4.78612 -0.46141 0.95900 1.02693 1.22566 1.36326 1.46935 1.57355 1.68758 1.78291 2.07257 2.25423 2.27000 2.99098 3.23399 3.32895 3.41388 3.51943 3.63046 3.74783 3.81206 3.90947 3.92164 4.08063 4.21481 4.23370 4.25767 4.28360 4.31992 4.40627 4.48448 4.52609 4.58019 4.65910 4.68632 4.72799 4.81135 4.83140 4.88798 4.98091 5.02330 5.21622 5.27997 5.35659 5.46252 5.72929 5.80005 5.97314 6.07222 6.59197 6.61398 6.67236 6.70636 8.04523 8.46530 Molecular weight = 373.13amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.002238 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.481190 B =12510.752283 C =14865.758718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.477 3.523 4 O -0.533 6.533 5 C -0.105 4.105 6 H 0.128 0.872 7 C -0.122 4.122 8 C 0.127 3.873 9 H 0.144 0.856 10 N -0.355 5.355 11 N -0.304 5.304 12 C 0.050 3.950 13 C -0.276 4.276 14 C 0.119 3.881 15 C -0.118 4.118 16 C -0.033 4.033 17 C 0.073 3.927 18 C -0.226 4.226 19 C 0.524 3.476 20 O -0.737 6.737 21 O -0.721 6.721 22 C -0.174 4.174 23 C 0.047 3.953 24 C -0.048 4.048 25 O -0.558 6.558 26 Si 0.760 3.240 27 N -0.514 5.514 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.211 0.789 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.401 0.599 41 H -0.321 1.321 42 H -0.239 1.239 43 H 0.430 0.570 44 H 0.125 0.875 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.781 -6.528 10.287 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.321 3.679 4 O -0.423 6.423 5 C -0.124 4.124 6 H 0.146 0.854 7 C -0.160 4.160 8 C 0.025 3.975 9 H 0.161 0.839 10 N -0.138 5.138 11 N -0.125 5.125 12 C -0.134 4.134 13 C -0.305 4.305 14 C -0.006 4.006 15 C -0.139 4.139 16 C -0.055 4.055 17 C -0.041 4.041 18 C -0.235 4.235 19 C 0.365 3.635 20 O -0.656 6.656 21 O -0.639 6.639 22 C -0.198 4.198 23 C -0.067 4.067 24 C -0.157 4.157 25 O -0.369 6.369 26 Si 0.664 3.336 27 N -0.112 5.112 28 C -0.141 4.141 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.227 0.773 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.253 0.747 41 H -0.249 1.249 42 H -0.164 1.164 43 H 0.271 0.729 44 H 0.144 0.856 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.822 -6.379 9.661 29.214 hybrid contribution -0.141 0.821 -0.707 1.093 sum -26.963 -5.559 8.954 28.949 Atomic orbital electron populations 1.23570 0.74791 1.05737 1.02599 1.86539 1.25035 1.32946 1.83406 1.23809 0.91976 0.81139 0.70956 1.90647 1.67644 1.37216 1.46777 1.22599 0.86335 1.00859 1.02590 0.85373 1.23382 0.96580 0.95343 1.00691 1.22356 0.81504 0.97879 0.95798 0.83897 1.48747 1.05940 1.20087 1.39051 1.77081 1.20650 1.03092 1.11726 1.24055 0.90102 0.99437 0.99757 1.22080 1.01209 0.99865 1.07364 1.19991 0.85729 0.95504 0.99390 1.20993 0.95745 0.94902 1.02254 1.20656 0.96671 0.92279 0.95890 1.18183 0.90768 0.98095 0.97036 1.22123 0.96647 1.01001 1.03755 1.16604 0.84924 0.81404 0.80598 1.90676 1.35340 1.62484 1.77118 1.90627 1.88540 1.38202 1.46556 1.20778 0.97495 1.01426 1.00107 1.19948 0.91160 0.94147 1.01429 1.24559 0.98161 0.97846 0.95126 1.86548 1.46629 1.57648 1.46025 0.93287 0.82470 0.78383 0.79494 1.41717 1.13146 1.25354 1.31002 1.23188 0.96128 0.99923 0.94895 0.92118 0.85188 0.91583 0.91022 0.85901 0.77276 0.84351 0.83616 0.85408 0.84307 0.86574 0.74735 1.24928 1.16395 0.72889 0.85650 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -6.37 10.56 -51.40 -0.54 -6.91 16 3 C 0.48 9.33 7.48 71.24 0.53 9.86 16 4 O -0.53 -12.81 15.65 21.96 0.34 -12.46 16 5 C -0.10 -1.85 3.90 -11.01 -0.04 -1.90 16 6 H 0.13 2.58 7.19 -2.39 -0.02 2.56 16 7 C -0.12 -2.15 7.20 31.12 0.22 -1.93 16 8 C 0.13 2.20 4.72 45.59 0.22 2.42 16 9 H 0.14 1.78 7.21 -2.39 -0.02 1.76 16 10 N -0.35 -8.85 3.76 -312.05 -1.17 -10.03 16 11 N -0.30 -8.00 10.94 -57.37 -0.63 -8.63 16 12 C 0.05 1.32 11.96 85.07 1.02 2.34 16 13 C -0.28 -8.83 10.20 22.54 0.23 -8.60 16 14 C 0.12 3.59 6.91 40.56 0.28 3.87 16 15 C -0.12 -3.55 9.39 23.73 0.22 -3.33 16 16 C -0.03 -1.37 9.00 22.45 0.20 -1.16 16 17 C 0.07 3.21 6.78 39.72 0.27 3.47 16 18 C -0.23 -12.50 6.19 -19.79 -0.12 -12.62 16 19 C 0.52 36.75 8.02 69.91 0.56 37.32 16 20 O -0.74 -56.20 17.83 17.14 0.31 -55.89 16 21 O -0.72 -52.59 15.75 17.14 0.27 -52.32 16 22 C -0.17 -7.91 9.13 22.35 0.20 -7.71 16 23 C 0.05 1.60 6.50 40.93 0.27 1.87 16 24 C -0.05 -1.07 3.07 71.24 0.22 -0.85 16 25 O -0.56 -11.85 12.86 -148.98 -1.92 -13.76 16 26 Si 0.76 16.74 30.51 68.60 2.09 18.83 16 27 N -0.51 -16.79 5.91 -175.09 -1.03 -17.82 16 28 C -0.10 -1.49 7.17 31.19 0.22 -1.27 16 29 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 30 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.12 1.95 7.43 -2.39 -0.02 1.93 16 34 H 0.21 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.14 4.90 7.33 -2.91 -0.02 4.88 16 36 H 0.15 3.15 6.16 -2.91 -0.02 3.13 16 37 H 0.13 6.30 5.18 -2.91 -0.02 6.29 16 38 H 0.14 6.22 6.12 -2.91 -0.02 6.20 16 39 H 0.12 1.65 7.96 -2.39 -0.02 1.64 16 40 H 0.40 4.11 8.74 -74.06 -0.65 3.46 16 41 H -0.32 -10.97 7.11 99.48 0.71 -10.26 16 42 H -0.24 -4.41 7.11 99.48 0.71 -3.70 16 43 H 0.43 9.92 7.85 -92.70 -0.73 9.19 16 44 H 0.13 1.23 8.09 -2.39 -0.02 1.21 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -101.60 394.18 3.17 -98.42 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.24 Total: 37.29 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 5.70 Total: 23.27 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -2.84 Total: -36.47 kcal Atomic # 8 Polarization: -139.81 SS G_CDS: -1.54 Total: -141.35 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: 2.09 Total: 18.83 kcal Total: -101.60 3.17 -98.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_16734034_15431928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.186 kcal (2) G-P(sol) polarization free energy of solvation -101.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds