Wall clock time and date at job start Mon Mar 8 2021 13:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47290 * 2 1 4 4 C 1.50708 * 109.47216 * 120.00248 * 2 1 3 5 5 C 1.34482 * 125.18565 * 244.97613 * 4 2 1 6 6 C 1.46550 * 106.83782 * 179.78779 * 5 4 2 7 7 C 1.46297 * 127.09783 * 180.24485 * 6 5 4 8 8 O 1.22479 * 119.99757 * 0.15215 * 7 6 5 9 9 O 1.22483 * 120.00406 * 180.14560 * 7 6 5 10 10 C 1.40079 * 105.81233 * 0.36612 * 6 5 4 11 11 C 1.46181 * 126.20673 * 179.89252 * 10 6 5 12 12 C 1.34908 * 120.00088 * 179.71587 * 11 10 6 13 13 C 1.47185 * 120.00017 * 180.02562 * 12 11 10 14 14 N 1.32056 * 126.10089 * 359.97438 * 13 12 11 15 15 N 1.40061 * 108.04284 * 180.02562 * 14 13 12 16 16 C 1.46506 * 125.88926 * 179.97438 * 15 14 13 17 17 H 1.09007 * 112.84595 * 323.83351 * 16 15 14 18 18 C 1.53779 * 113.61276 * 95.02392 * 16 15 14 19 19 C 1.53787 * 87.07963 * 89.20243 * 18 16 15 20 20 H 1.08994 * 113.61447 * 270.88515 * 19 18 16 21 21 C 1.50702 * 113.61150 * 139.98062 * 19 18 16 22 22 O 1.21920 * 119.99895 * 140.00351 * 21 19 18 23 23 O 1.21921 * 120.00011 * 319.99728 * 21 19 18 24 24 C 1.53779 * 113.69339 * 192.56325 * 16 15 14 25 25 C 1.35150 * 108.22675 * 0.26655 * 15 14 13 26 26 C 1.34927 * 108.09136 * 359.56702 * 25 15 14 27 27 N 1.36383 * 107.58681 * 359.63649 * 10 6 5 28 28 H 0.96700 * 113.99604 * 60.00380 * 1 2 3 29 29 H 1.08998 * 109.47140 * 239.99479 * 2 1 3 30 30 H 1.48504 * 109.99747 * 298.68162 * 3 2 1 31 31 H 1.48500 * 110.00047 * 59.99966 * 3 2 1 32 32 H 1.08006 * 126.58474 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.99923 * 359.72138 * 11 10 6 34 34 H 1.08003 * 120.00052 * 359.97438 * 12 11 10 35 35 H 1.08997 * 113.61646 * 334.65874 * 18 16 15 36 36 H 1.09000 * 113.61527 * 203.75146 * 18 16 15 37 37 H 1.09002 * 113.61557 * 156.32618 * 24 16 15 38 38 H 1.09004 * 113.61501 * 25.42039 * 24 16 15 39 39 H 1.07999 * 125.95368 * 179.74068 * 25 15 14 40 40 H 1.08004 * 126.07841 * 180.20013 * 26 25 15 41 41 H 0.97002 * 124.93424 * 180.23951 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.6280 -0.1358 2.2270 6 6 2.9033 -1.1850 3.2125 7 6 3.6300 -1.0419 4.4741 8 8 4.0804 0.0491 4.8010 9 8 3.7879 -2.0131 5.2035 10 6 2.3296 -2.3539 2.6959 11 6 2.3449 -3.6738 3.3241 12 6 1.7449 -4.7175 2.7152 13 6 1.7599 -6.0464 3.3479 14 7 2.3223 -6.3519 4.5030 15 7 2.1107 -7.7158 4.7412 16 6 2.5714 -8.4645 5.9132 17 1 3.5467 -8.1336 6.2703 18 6 1.5151 -8.5799 7.0248 19 6 1.0366 -9.8648 6.3283 20 1 0.2738 -9.6918 5.5692 21 6 0.6718 -10.9703 7.2854 22 8 -0.3039 -11.6681 7.0674 23 8 1.3525 -11.1669 8.2776 24 6 2.4583 -9.9900 5.7555 25 6 1.4137 -8.2235 3.7006 26 6 1.1756 -7.2226 2.8276 27 7 1.7491 -2.0358 1.5035 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8899 30 1 1.5879 2.4585 -1.2243 31 1 1.5616 2.4679 1.2085 32 1 2.9242 0.9009 2.2909 33 1 2.8364 -3.8133 4.2756 34 1 1.2530 -4.5779 1.7639 35 1 0.7787 -7.7765 7.0124 36 1 1.9393 -8.7516 8.0141 37 1 3.1403 -10.5472 6.3978 38 1 2.4833 -10.3249 4.7185 39 1 1.0995 -9.2507 3.5887 40 1 0.6375 -7.3067 1.8949 41 1 1.2754 -2.6605 0.9322 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_6_16734034_15608776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:33:45 Heat of formation + Delta-G solvation = -115.941649 kcal Electronic energy + Delta-G solvation = -29806.124203 eV Core-core repulsion = 25231.950303 eV Total energy + Delta-G solvation = -4574.173900 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.109 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.05370 -39.58366 -37.67223 -36.25777 -35.60550 -35.28195 -33.00427 -31.51769 -31.24125 -29.89396 -29.22609 -28.84942 -27.93489 -24.88857 -24.42066 -23.76916 -21.80100 -20.50164 -19.66461 -19.14369 -18.34561 -17.69291 -17.05223 -16.98600 -16.40017 -15.49798 -15.34331 -14.37071 -14.25514 -13.67131 -13.41018 -13.36543 -13.08021 -12.91488 -12.74898 -12.53976 -12.42209 -12.30970 -12.25709 -11.87344 -11.66733 -11.60914 -11.44657 -11.17415 -11.01335 -10.69748 -10.57120 -10.41564 -10.20979 -10.00933 -9.44818 -9.26142 -9.03755 -8.96952 -8.92096 -7.80991 -7.35144 -7.20370 -6.99787 -6.88256 -6.74974 -6.63058 -6.43761 -6.33935 -6.03590 -3.31963 2.26210 2.86055 3.04889 3.27058 3.58800 3.66929 3.74321 4.12961 4.49124 4.85078 5.02106 5.52857 5.66712 5.74433 5.90224 5.95209 5.98472 6.10420 6.24713 6.32538 6.62291 6.76077 6.76894 6.82838 6.91145 6.93751 7.01504 7.07072 7.09182 7.16862 7.19917 7.38406 7.42339 7.46839 7.54099 7.59652 7.79282 7.81051 7.94250 7.97009 8.06684 8.39787 8.42704 8.51256 8.81530 9.08281 11.18942 11.35914 11.60837 11.82529 Molecular weight = 358.11amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.001949 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.961697 B =14365.711022 C =15489.674276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.050 4.050 3 Si 0.708 3.292 4 C 0.014 3.986 5 C -0.154 4.154 6 C -0.166 4.166 7 C 0.543 3.457 8 O -0.697 6.697 9 O -0.684 6.684 10 C 0.065 3.935 11 C -0.010 4.010 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.276 5.276 15 N -0.345 5.345 16 C 0.129 3.871 17 H 0.105 0.895 18 C -0.122 4.122 19 C -0.180 4.180 20 H 0.079 0.921 21 C 0.503 3.497 22 O -0.704 6.704 23 O -0.696 6.696 24 C -0.116 4.116 25 C 0.057 3.943 26 C -0.276 4.276 27 N -0.547 5.547 28 H 0.371 0.629 29 H 0.065 0.935 30 H -0.268 1.268 31 H -0.251 1.251 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.169 0.831 40 H 0.141 0.859 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 12.832 -25.782 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.159 4.159 3 Si 0.609 3.391 4 C -0.097 4.097 5 C -0.179 4.179 6 C -0.175 4.175 7 C 0.379 3.621 8 O -0.614 6.614 9 O -0.600 6.600 10 C -0.046 4.046 11 C -0.032 4.032 12 C -0.156 4.156 13 C -0.057 4.057 14 N -0.099 5.099 15 N -0.126 5.126 16 C 0.027 3.973 17 H 0.122 0.878 18 C -0.160 4.160 19 C -0.201 4.201 20 H 0.097 0.903 21 C 0.339 3.661 22 O -0.621 6.621 23 O -0.612 6.612 24 C -0.155 4.155 25 C -0.088 4.088 26 C -0.305 4.305 27 N -0.145 5.145 28 H 0.217 0.783 29 H 0.083 0.917 30 H -0.194 1.194 31 H -0.175 1.175 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.186 0.814 40 H 0.159 0.841 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.193 13.318 -23.526 27.035 hybrid contribution -2.119 -0.694 -2.180 3.118 sum -2.312 12.625 -25.706 28.732 Atomic orbital electron populations 1.86687 1.18781 1.80179 1.49098 1.24509 0.83627 1.11342 0.96417 0.94098 0.92499 0.73370 0.79153 1.19288 1.07477 0.84374 0.98576 1.21755 1.03435 0.99144 0.93582 1.24132 1.03089 0.89921 1.00372 1.15898 0.78389 0.85980 0.81827 1.90714 1.59692 1.32792 1.78231 1.90758 1.67944 1.44868 1.56381 1.19597 1.02655 0.95270 0.87097 1.22089 0.94284 0.87201 0.99580 1.20828 1.05881 0.89219 0.99678 1.20795 0.97914 0.94189 0.92843 1.77912 1.23853 0.91128 1.16990 1.48462 1.41675 1.06322 1.16118 1.22301 0.98937 0.91722 0.84330 0.87756 1.23160 0.97446 0.97314 0.98110 1.23865 0.95767 0.99658 1.00827 0.90271 1.17968 0.82809 0.81898 0.83417 1.90588 1.35625 1.54553 1.81294 1.90585 1.60073 1.76701 1.33856 1.23112 0.99049 0.92227 1.01096 1.22376 0.97303 1.00060 0.89098 1.21354 1.13288 0.92043 1.03847 1.41696 1.45616 1.08566 1.18604 0.78267 0.91659 1.19442 1.17510 0.83946 0.81663 0.87003 0.91804 0.87677 0.87682 0.91669 0.81422 0.84127 0.76000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -11.23 12.86 -35.23 -0.45 -11.68 16 2 C -0.05 -1.04 3.07 36.01 0.11 -0.93 16 3 Si 0.71 13.37 30.52 -169.99 -5.19 8.18 16 4 C 0.01 0.37 6.48 -81.82 -0.53 -0.16 16 5 C -0.15 -4.73 9.39 -37.56 -0.35 -5.08 16 6 C -0.17 -6.01 6.36 -102.62 -0.65 -6.66 16 7 C 0.54 23.12 8.02 33.97 0.27 23.39 16 8 O -0.70 -31.05 17.87 -20.70 -0.37 -31.42 16 9 O -0.68 -30.73 15.83 -20.70 -0.33 -31.06 16 10 C 0.07 2.11 6.96 -81.97 -0.57 1.54 16 11 C -0.01 -0.31 9.28 -37.58 -0.35 -0.66 16 12 C -0.14 -3.89 9.79 -37.13 -0.36 -4.25 16 13 C 0.11 3.18 6.98 -82.99 -0.58 2.60 16 14 N -0.28 -9.01 12.15 33.29 0.40 -8.60 16 15 N -0.34 -10.48 3.79 -54.12 -0.21 -10.69 16 16 C 0.13 3.86 5.17 -67.12 -0.35 3.51 16 17 H 0.10 2.99 8.14 -51.93 -0.42 2.57 16 18 C -0.12 -3.91 7.37 -25.92 -0.19 -4.10 16 19 C -0.18 -6.13 3.79 -90.95 -0.34 -6.47 16 20 H 0.08 2.64 6.98 -51.93 -0.36 2.28 16 21 C 0.50 20.56 7.37 36.01 0.27 20.82 16 22 O -0.70 -30.97 18.00 -20.23 -0.36 -31.33 16 23 O -0.70 -29.84 17.17 -20.23 -0.35 -30.19 16 24 C -0.12 -3.45 6.85 -25.92 -0.18 -3.63 16 25 C 0.06 1.60 9.59 -17.27 -0.17 1.44 16 26 C -0.28 -7.50 10.78 -39.60 -0.43 -7.93 16 27 N -0.55 -14.94 5.86 -5.59 -0.03 -14.98 16 28 H 0.37 5.58 8.74 45.56 0.40 5.98 16 29 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 30 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 31 H -0.25 -5.79 7.11 56.52 0.40 -5.39 16 32 H 0.14 4.17 6.17 -52.48 -0.32 3.84 16 33 H 0.17 6.10 6.07 -52.49 -0.32 5.78 16 34 H 0.11 2.79 6.99 -52.48 -0.37 2.42 16 35 H 0.06 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.10 3.42 7.61 -51.93 -0.39 3.03 16 37 H 0.10 3.13 8.00 -51.93 -0.42 2.72 16 38 H 0.06 1.77 6.96 -51.93 -0.36 1.40 16 39 H 0.17 4.29 6.64 -52.49 -0.35 3.94 16 40 H 0.14 3.32 8.06 -52.48 -0.42 2.89 16 41 H 0.40 9.57 7.91 -40.82 -0.32 9.24 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -2.00 -94.64 369.90 -9.41 -104.04 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -3.70 Total: 38.72 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: -4.40 Total: 13.42 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.17 Total: -34.26 kcal Atomic # 8 Polarization: -133.82 SS G_CDS: -1.86 Total: -135.68 kcal Atomic # 14 Polarization: 13.37 SS G_CDS: -5.19 Total: 8.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -94.64 -9.41 -104.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_16734034_15608776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.900 kcal (2) G-P(sol) polarization free energy of solvation -94.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds