Wall clock time and date at job start Mon Mar 8 2021 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47290 * 2 1 4 4 C 1.50708 * 109.47216 * 120.00248 * 2 1 3 5 5 C 1.34482 * 125.18565 * 244.97613 * 4 2 1 6 6 C 1.46550 * 106.83782 * 179.78779 * 5 4 2 7 7 C 1.46297 * 127.09783 * 180.24485 * 6 5 4 8 8 O 1.22479 * 119.99757 * 0.15215 * 7 6 5 9 9 O 1.22483 * 120.00406 * 180.14560 * 7 6 5 10 10 C 1.40079 * 105.81233 * 0.36612 * 6 5 4 11 11 C 1.46181 * 126.20673 * 179.89252 * 10 6 5 12 12 C 1.34908 * 120.00088 * 179.71587 * 11 10 6 13 13 C 1.47185 * 120.00017 * 180.02562 * 12 11 10 14 14 N 1.32056 * 126.10089 * 359.97438 * 13 12 11 15 15 N 1.40061 * 108.04284 * 180.02562 * 14 13 12 16 16 C 1.46506 * 125.88926 * 179.97438 * 15 14 13 17 17 H 1.09007 * 112.84595 * 323.83351 * 16 15 14 18 18 C 1.53779 * 113.61276 * 95.02392 * 16 15 14 19 19 C 1.53787 * 87.07963 * 89.20243 * 18 16 15 20 20 H 1.08994 * 113.61447 * 270.88515 * 19 18 16 21 21 C 1.50702 * 113.61150 * 139.98062 * 19 18 16 22 22 O 1.21920 * 119.99895 * 140.00351 * 21 19 18 23 23 O 1.21921 * 120.00011 * 319.99728 * 21 19 18 24 24 C 1.53779 * 113.69339 * 192.56325 * 16 15 14 25 25 C 1.35150 * 108.22675 * 0.26655 * 15 14 13 26 26 C 1.34927 * 108.09136 * 359.56702 * 25 15 14 27 27 N 1.36383 * 107.58681 * 359.63649 * 10 6 5 28 28 H 0.96700 * 113.99604 * 60.00380 * 1 2 3 29 29 H 1.08998 * 109.47140 * 239.99479 * 2 1 3 30 30 H 1.48504 * 109.99747 * 298.68162 * 3 2 1 31 31 H 1.48500 * 110.00047 * 59.99966 * 3 2 1 32 32 H 1.08006 * 126.58474 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.99923 * 359.72138 * 11 10 6 34 34 H 1.08003 * 120.00052 * 359.97438 * 12 11 10 35 35 H 1.08997 * 113.61646 * 334.65874 * 18 16 15 36 36 H 1.09000 * 113.61527 * 203.75146 * 18 16 15 37 37 H 1.09002 * 113.61557 * 156.32618 * 24 16 15 38 38 H 1.09004 * 113.61501 * 25.42039 * 24 16 15 39 39 H 1.07999 * 125.95368 * 179.74068 * 25 15 14 40 40 H 1.08004 * 126.07841 * 180.20013 * 26 25 15 41 41 H 0.97002 * 124.93424 * 180.23951 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.6280 -0.1358 2.2270 6 6 2.9033 -1.1850 3.2125 7 6 3.6300 -1.0419 4.4741 8 8 4.0804 0.0491 4.8010 9 8 3.7879 -2.0131 5.2035 10 6 2.3296 -2.3539 2.6959 11 6 2.3449 -3.6738 3.3241 12 6 1.7449 -4.7175 2.7152 13 6 1.7599 -6.0464 3.3479 14 7 2.3223 -6.3519 4.5030 15 7 2.1107 -7.7158 4.7412 16 6 2.5714 -8.4645 5.9132 17 1 3.5467 -8.1336 6.2703 18 6 1.5151 -8.5799 7.0248 19 6 1.0366 -9.8648 6.3283 20 1 0.2738 -9.6918 5.5692 21 6 0.6718 -10.9703 7.2854 22 8 -0.3039 -11.6681 7.0674 23 8 1.3525 -11.1669 8.2776 24 6 2.4583 -9.9900 5.7555 25 6 1.4137 -8.2235 3.7006 26 6 1.1756 -7.2226 2.8276 27 7 1.7491 -2.0358 1.5035 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8899 30 1 1.5879 2.4585 -1.2243 31 1 1.5616 2.4679 1.2085 32 1 2.9242 0.9009 2.2909 33 1 2.8364 -3.8133 4.2756 34 1 1.2530 -4.5779 1.7639 35 1 0.7787 -7.7765 7.0124 36 1 1.9393 -8.7516 8.0141 37 1 3.1403 -10.5472 6.3978 38 1 2.4833 -10.3249 4.7185 39 1 1.0995 -9.2507 3.5887 40 1 0.6375 -7.3067 1.8949 41 1 1.2754 -2.6605 0.9322 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_16734034_15608776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:33:43 Heat of formation + Delta-G solvation = -197.064405 kcal Electronic energy + Delta-G solvation = -29809.641950 eV Core-core repulsion = 25231.950303 eV Total energy + Delta-G solvation = -4577.691647 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.109 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.39716 -41.93150 -40.42823 -39.03810 -38.28441 -37.74438 -35.43470 -34.87544 -34.59532 -32.22664 -31.69628 -31.10925 -30.16587 -27.32630 -26.89854 -26.01807 -24.42493 -23.05607 -22.09869 -21.42526 -20.78321 -20.07477 -19.83294 -19.20195 -18.52852 -17.86276 -17.76614 -17.12059 -16.36839 -16.11522 -15.98640 -15.93045 -15.70236 -15.46778 -15.43173 -15.36475 -15.22254 -15.00858 -14.60676 -14.39147 -14.07974 -13.89714 -13.70352 -13.45695 -13.36734 -13.17671 -13.01977 -12.75649 -12.46220 -11.93493 -11.82803 -11.62244 -11.48790 -11.40787 -10.52213 -10.39902 -10.29642 -10.21856 -10.16691 -10.13357 -9.69726 -9.67150 -9.62916 -9.44819 -8.45340 -4.74328 -0.16187 1.02299 1.25636 1.43303 1.44543 1.59710 1.64876 2.13732 2.30394 2.46638 2.79929 3.19824 3.39946 3.49119 3.59114 3.75292 3.76191 3.79859 3.89315 4.08392 4.12373 4.25526 4.35250 4.36989 4.41733 4.55103 4.57848 4.63117 4.66735 4.70220 4.77624 4.82462 4.89594 4.92767 4.98922 5.13545 5.21463 5.41710 5.60230 5.70634 5.84687 6.06711 6.15084 6.66338 6.75260 6.79234 7.95869 8.04786 8.31992 8.48524 Molecular weight = 358.11amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.001949 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.961697 B =14365.711022 C =15489.674276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.054 4.054 3 Si 0.769 3.231 4 C 0.048 3.952 5 C -0.176 4.176 6 C -0.245 4.245 7 C 0.524 3.476 8 O -0.738 6.738 9 O -0.727 6.727 10 C 0.087 3.913 11 C -0.058 4.058 12 C -0.079 4.079 13 C 0.081 3.919 14 N -0.328 5.328 15 N -0.355 5.355 16 C 0.142 3.858 17 H 0.114 0.886 18 C -0.123 4.123 19 C -0.174 4.174 20 H 0.091 0.909 21 C 0.484 3.516 22 O -0.743 6.743 23 O -0.725 6.725 24 C -0.094 4.094 25 C 0.052 3.948 26 C -0.253 4.253 27 N -0.520 5.520 28 H 0.400 0.600 29 H 0.116 0.884 30 H -0.231 1.231 31 H -0.321 1.321 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.198 0.802 40 H 0.189 0.811 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 12.357 -32.395 34.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.162 4.162 3 Si 0.672 3.328 4 C -0.065 4.065 5 C -0.200 4.200 6 C -0.254 4.254 7 C 0.365 3.635 8 O -0.657 6.657 9 O -0.646 6.646 10 C -0.027 4.027 11 C -0.081 4.081 12 C -0.100 4.100 13 C -0.081 4.081 14 N -0.152 5.152 15 N -0.137 5.137 16 C 0.039 3.961 17 H 0.132 0.868 18 C -0.162 4.162 19 C -0.195 4.195 20 H 0.109 0.891 21 C 0.324 3.676 22 O -0.662 6.662 23 O -0.643 6.643 24 C -0.133 4.133 25 C -0.092 4.092 26 C -0.281 4.281 27 N -0.119 5.119 28 H 0.252 0.748 29 H 0.134 0.866 30 H -0.156 1.156 31 H -0.250 1.250 32 H 0.161 0.839 33 H 0.129 0.871 34 H 0.185 0.815 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.214 0.786 40 H 0.206 0.794 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.127 12.841 -30.245 32.927 hybrid contribution -1.639 -0.646 -0.073 1.763 sum -3.767 12.195 -30.318 32.895 Atomic orbital electron populations 1.86588 1.17934 1.80989 1.51436 1.24711 0.84457 1.12175 0.94826 0.93260 0.91417 0.70976 0.77177 1.19955 1.04122 0.83604 0.98784 1.21737 1.05677 0.98605 0.94017 1.23083 1.07908 0.94320 1.00121 1.16615 0.78169 0.84683 0.83991 1.90623 1.61392 1.33694 1.80014 1.90693 1.69408 1.45572 1.58881 1.19180 1.01425 0.93803 0.88286 1.21566 0.98285 0.88989 0.99249 1.21288 1.01531 0.87217 0.99942 1.21261 0.98442 0.95655 0.92748 1.77914 1.25618 0.92643 1.18981 1.48485 1.42582 1.05834 1.16792 1.22094 0.98378 0.91944 0.83649 0.86842 1.23124 0.98229 0.96189 0.98648 1.23507 0.98654 0.97391 0.99908 0.89085 1.18874 0.81786 0.82961 0.84018 1.90549 1.36992 1.56590 1.82034 1.90550 1.60430 1.77756 1.35581 1.23008 0.95374 0.91989 1.02912 1.23001 0.96363 1.01655 0.88200 1.21826 1.11579 0.89816 1.04890 1.41543 1.44117 1.09406 1.16813 0.74805 0.86585 1.15578 1.24996 0.83877 0.87114 0.81515 0.92462 0.88744 0.87769 0.88013 0.78567 0.79390 0.72997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -19.40 12.86 -148.98 -1.92 -21.31 16 2 C -0.05 -1.90 3.07 71.24 0.22 -1.68 16 3 Si 0.77 25.54 30.52 68.60 2.09 27.63 16 4 C 0.05 2.35 6.48 40.97 0.27 2.61 16 5 C -0.18 -10.74 9.39 23.58 0.22 -10.51 16 6 C -0.25 -18.08 6.36 -18.57 -0.12 -18.19 16 7 C 0.52 46.73 8.02 69.92 0.56 47.30 16 8 O -0.74 -68.73 17.87 17.16 0.31 -68.42 16 9 O -0.73 -68.79 15.83 17.15 0.27 -68.52 16 10 C 0.09 5.54 6.96 40.95 0.29 5.83 16 11 C -0.06 -3.74 9.28 23.57 0.22 -3.52 16 12 C -0.08 -4.23 9.79 23.86 0.23 -3.99 16 13 C 0.08 4.57 6.98 42.21 0.29 4.87 16 14 N -0.33 -20.76 12.15 -48.59 -0.59 -21.35 16 15 N -0.36 -20.34 3.79 -325.13 -1.23 -21.57 16 16 C 0.14 8.07 5.17 45.52 0.24 8.30 16 17 H 0.11 6.27 8.14 -2.38 -0.02 6.25 16 18 C -0.12 -7.73 7.37 31.12 0.23 -7.50 16 19 C -0.17 -11.34 3.79 -11.01 -0.04 -11.39 16 20 H 0.09 5.72 6.98 -2.39 -0.02 5.70 16 21 C 0.48 38.97 7.37 71.24 0.53 39.50 16 22 O -0.74 -64.66 18.00 19.05 0.34 -64.32 16 23 O -0.73 -61.85 17.17 19.05 0.33 -61.53 16 24 C -0.09 -5.23 6.85 31.12 0.21 -5.02 16 25 C 0.05 2.61 9.59 83.42 0.80 3.41 16 26 C -0.25 -12.05 10.78 22.25 0.24 -11.81 16 27 N -0.52 -25.96 5.86 -171.58 -1.01 -26.97 16 28 H 0.40 9.03 8.74 -74.06 -0.65 8.39 16 29 H 0.12 3.14 7.96 -2.39 -0.02 3.12 16 30 H -0.23 -6.51 7.11 99.48 0.71 -5.80 16 31 H -0.32 -14.60 7.11 99.48 0.71 -13.89 16 32 H 0.14 8.45 6.17 -2.91 -0.02 8.43 16 33 H 0.11 8.46 6.07 -2.91 -0.02 8.44 16 34 H 0.17 6.98 6.99 -2.91 -0.02 6.96 16 35 H 0.06 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.09 6.10 7.61 -2.39 -0.02 6.08 16 37 H 0.10 5.87 8.00 -2.39 -0.02 5.85 16 38 H 0.10 4.92 6.96 -2.39 -0.02 4.90 16 39 H 0.20 8.64 6.64 -2.91 -0.02 8.62 16 40 H 0.19 7.13 8.06 -2.91 -0.02 7.11 16 41 H 0.43 17.20 7.91 -92.71 -0.73 16.47 16 Total: -2.00 -210.73 369.90 2.79 -207.94 By element: Atomic # 1 Polarization: 80.42 SS G_CDS: -0.19 Total: 80.22 kcal Atomic # 6 Polarization: 33.82 SS G_CDS: 4.38 Total: 38.20 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -2.83 Total: -69.90 kcal Atomic # 8 Polarization: -283.44 SS G_CDS: -0.67 Total: -284.10 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: 2.09 Total: 27.63 kcal Total: -210.73 2.79 -207.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_16734034_15608776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.879 kcal (2) G-P(sol) polarization free energy of solvation -210.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -207.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds