Wall clock time and date at job start Mon Mar 8 2021 14:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.34963 * 126.05575 * 255.31141 * 7 2 1 9 9 N 1.35936 * 107.95186 * 179.97438 * 8 7 2 10 10 C 1.40091 * 125.95763 * 180.02562 * 9 8 7 11 11 C 1.38870 * 120.06189 * 0.27086 * 10 9 8 12 12 C 1.38096 * 119.94478 * 179.97438 * 11 10 9 13 13 C 1.38396 * 120.05671 * 0.02562 * 12 11 10 14 14 Cl 1.73596 * 119.94160 * 179.97438 * 13 12 11 15 15 C 1.38392 * 120.11365 * 359.95377 * 13 12 11 16 16 C 1.38101 * 120.05652 * 359.79016 * 15 13 12 17 17 N 1.40076 * 108.08043 * 359.97438 * 9 8 7 18 18 C 1.31981 * 108.10189 * 359.75312 * 17 9 8 19 19 C 1.47366 * 126.01479 * 180.02562 * 18 17 9 20 20 C 1.34265 * 119.99710 * 359.97438 * 19 18 17 21 21 C 1.47386 * 120.00194 * 179.97438 * 20 19 18 22 22 C 1.39719 * 120.16432 * 180.27465 * 21 20 19 23 23 C 1.37939 * 119.83951 * 179.97438 * 22 21 20 24 Xx 1.80991 * 119.92140 * 179.97438 * 23 22 21 25 24 F 9.23484 * 104.19048 * 246.06437 * 17 1 2 26 25 F 1.61007 * 89.99829 * 135.00349 * 24 23 22 27 26 F 1.60998 * 90.00154 * 315.00472 * 24 23 22 28 27 F 1.60993 * 90.00208 * 225.00323 * 24 23 22 29 28 F 1.61003 * 90.00024 * 45.00581 * 24 23 22 30 29 C 1.38361 * 120.15588 * 359.97438 * 23 22 21 31 30 C 1.38392 * 120.33161 * 0.02562 * 30 23 22 32 31 C 1.37901 * 120.16138 * 359.72414 * 31 30 23 33 32 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 34 33 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 35 34 H 1.08000 * 126.02534 * 359.94303 * 8 7 2 36 35 H 1.07995 * 120.02250 * 359.96230 * 11 10 9 37 36 H 1.08001 * 119.97219 * 180.02562 * 12 11 10 38 37 H 1.08001 * 119.97004 * 180.02562 * 15 13 12 39 38 H 1.08003 * 120.02790 * 180.02562 * 16 15 13 40 39 H 1.07995 * 120.00632 * 179.97438 * 19 18 17 41 40 H 1.08002 * 120.00312 * 359.97438 * 20 19 18 42 41 H 1.08004 * 120.07707 * 359.97438 * 22 21 20 43 42 H 1.08003 * 119.83317 * 179.97438 * 30 23 22 44 43 H 1.07998 * 119.92430 * 180.02562 * 31 30 23 45 44 H 1.08006 * 120.08487 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5549 2.4565 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.4570 -0.1246 2.3269 9 7 2.7861 -1.1054 3.2088 10 6 3.3601 -0.9164 4.4727 11 6 3.6376 0.3666 4.9259 12 6 4.2029 0.5500 6.1724 13 6 4.4934 -0.5434 6.9696 14 17 5.2047 -0.3093 8.5357 15 6 4.2174 -1.8229 6.5204 16 6 3.6473 -2.0116 5.2769 17 7 2.4502 -2.3377 2.6338 18 6 1.9291 -2.1064 1.4434 19 6 1.4396 -3.1261 0.4988 20 6 1.5039 -4.4274 0.8230 21 6 1.0138 -5.4473 -0.1214 22 6 1.0738 -6.8021 0.2149 23 6 0.6128 -7.7509 -0.6739 24 9 0.7614 -11.0685 0.1431 25 9 -0.8141 -9.7055 -0.7797 26 9 2.1940 -9.3075 0.2979 27 9 1.2602 -9.8434 -1.7083 28 9 0.1197 -9.1697 1.2266 29 6 0.0914 -7.3636 -1.8957 30 6 0.0288 -6.0236 -2.2357 31 6 0.4811 -5.0635 -1.3552 32 1 -0.3933 0.4417 -0.7650 33 1 1.7924 -0.5139 -0.8900 34 1 2.5927 0.9362 2.4770 35 1 3.4117 1.2200 4.3039 36 1 4.4186 1.5477 6.5255 37 1 4.4447 -2.6745 7.1446 38 1 3.4317 -3.0104 4.9270 39 1 1.0292 -2.8267 -0.4542 40 1 1.9147 -4.7269 1.7759 41 1 1.4801 -7.1056 1.1684 42 1 -0.2677 -8.1110 -2.5878 43 1 -0.3798 -5.7287 -3.1909 44 1 0.4321 -4.0181 -1.6220 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_6_7941758_13158274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:06:40 Heat of formation + Delta-G solvation = 489.103135 kcal Electronic energy + Delta-G solvation = -37940.154858 eV Core-core repulsion = 31828.797840 eV Total energy + Delta-G solvation = -6111.357018 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 434.069 amu Computer time = 9.84 seconds Orbital eigenvalues (eV) -44.37049 -44.24958 -44.14977 -44.07225 -43.56766 -42.78050 -41.03442 -40.31403 -37.76390 -37.44628 -36.27522 -34.31211 -32.73939 -32.59656 -32.00895 -31.29008 -29.52770 -26.58626 -25.81345 -24.13137 -23.96212 -23.53300 -22.35007 -21.12201 -19.89245 -19.41849 -18.37053 -18.29648 -17.79154 -17.20356 -16.54944 -16.44886 -16.31084 -16.06210 -15.85285 -15.41200 -15.30982 -15.24366 -15.11388 -15.07521 -14.99843 -14.76565 -14.75705 -14.59553 -14.52057 -14.31333 -14.16724 -14.15821 -14.09717 -13.89945 -13.80899 -13.64703 -13.59791 -13.56133 -13.40853 -13.15109 -13.05347 -12.90019 -12.59461 -12.50216 -12.28515 -12.24107 -12.15985 -12.00529 -11.92015 -11.88264 -11.57783 -11.46128 -11.19049 -10.75818 -10.32927 -10.27885 -10.12772 -9.70793 -8.93823 -5.25329 -4.80529 -3.07200 -0.98336 -0.59432 -0.46323 0.03924 0.56514 0.93049 0.97161 1.14001 1.28555 1.55097 1.60943 1.85408 2.02367 2.30867 2.43921 2.68653 2.91965 3.09072 3.37500 3.44499 3.48905 3.59789 3.61716 3.67484 3.75894 3.88299 3.98122 4.06735 4.12245 4.19837 4.29656 4.35453 4.44565 4.46317 4.56052 4.74034 4.75459 4.75880 4.81618 4.84623 4.92360 5.03853 5.15327 5.28154 5.32205 5.38898 5.41316 5.89179 6.35540 7.02761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.034 4.034 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.248 1.248 6 H -0.268 1.268 7 C -0.196 4.196 8 C 0.048 3.952 9 N -0.325 5.325 10 C 0.149 3.851 11 C -0.127 4.127 12 C -0.079 4.079 13 C -0.055 4.055 14 Cl -0.065 7.065 15 C -0.087 4.087 16 C -0.116 4.116 17 N -0.302 5.302 18 C 0.117 3.883 19 C -0.033 4.033 20 C -0.099 4.099 21 C 0.015 3.985 22 C -0.123 4.123 23 C 0.329 3.671 24 F -0.216 7.216 25 F -0.158 7.158 26 F -0.169 7.169 27 F -0.156 7.156 28 F -0.171 7.171 29 C -0.118 4.118 30 C -0.025 4.025 31 C -0.077 4.077 32 H 0.400 0.600 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.186 0.814 40 H 0.125 0.875 41 H 0.172 0.828 42 H 0.188 0.812 43 H 0.232 0.768 44 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 17.910 -8.756 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.146 4.146 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.171 1.171 6 H -0.193 1.193 7 C -0.206 4.206 8 C -0.092 4.092 9 N -0.100 5.100 10 C 0.056 3.944 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.082 4.082 14 Cl -0.036 7.036 15 C -0.106 4.106 16 C -0.136 4.136 17 N -0.122 5.122 18 C -0.047 4.047 19 C -0.052 4.052 20 C -0.120 4.120 21 C 0.015 3.985 22 C -0.141 4.141 23 C 0.325 3.675 24 F -0.216 7.216 25 F -0.157 7.157 26 F -0.167 7.167 27 F -0.155 7.155 28 F -0.170 7.170 29 C -0.136 4.136 30 C -0.042 4.042 31 C -0.094 4.094 32 H 0.251 0.749 33 H 0.131 0.869 34 H 0.216 0.784 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.203 0.797 40 H 0.143 0.857 41 H 0.189 0.811 42 H 0.205 0.795 43 H 0.249 0.751 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.586 17.707 -7.135 19.099 hybrid contribution -0.002 -1.578 0.417 1.632 sum -0.588 16.128 -6.717 17.481 Atomic orbital electron populations 1.86501 1.17068 1.82005 1.51345 1.23856 0.85620 1.08950 0.96223 0.85638 0.79559 0.75678 0.81107 1.18832 1.17112 1.19263 1.19841 1.09926 0.92360 0.98506 1.22938 1.00018 0.96554 0.89712 1.45781 1.47028 1.04748 1.12475 1.17831 0.98255 0.95494 0.82792 1.21028 1.01409 0.95068 0.97223 1.21155 0.96778 0.99553 0.92303 1.21174 1.02680 0.95362 0.89031 1.98406 1.82183 1.97281 1.25765 1.21135 0.97294 0.96635 0.95533 1.20893 1.00183 0.98944 0.93602 1.77743 1.21413 1.02681 1.10357 1.21298 0.97099 0.94058 0.92231 1.21628 0.96733 0.88872 0.97932 1.21803 1.00045 0.91625 0.98574 1.18879 0.98378 0.85428 0.95836 1.21988 1.01443 0.87876 1.02792 1.27588 1.10524 0.33671 0.95668 2.00000 1.35217 1.99906 1.86508 1.99921 1.22845 1.93977 1.98936 1.99920 1.27708 1.93563 1.95557 1.99920 1.55437 1.96823 1.63295 1.99920 1.53879 1.88683 1.74492 1.22510 0.99530 0.98658 0.92864 1.22082 0.96285 0.83185 1.02607 1.22618 0.92176 1.04530 0.90026 0.74886 0.86913 0.78438 0.81922 0.81703 0.82903 0.83921 0.79663 0.85714 0.81062 0.79520 0.75137 0.76842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 111. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 6.26 12.86 -148.98 -1.92 4.35 16 2 C -0.03 0.39 2.78 71.24 0.20 0.59 16 3 Si 0.96 -9.16 26.07 68.60 1.79 -7.37 16 4 H -0.26 1.81 7.11 99.48 0.71 2.51 16 5 H -0.25 2.35 7.11 99.48 0.71 3.06 16 6 H -0.27 1.70 7.02 99.48 0.70 2.40 16 7 C -0.20 0.93 5.43 -19.89 -0.11 0.82 16 8 C 0.05 -0.14 9.33 83.30 0.78 0.64 16 9 N -0.33 -0.37 3.81 -187.52 -0.72 -1.08 16 10 C 0.15 0.07 6.69 38.12 0.25 0.32 16 11 C -0.13 0.47 9.46 22.39 0.21 0.68 16 12 C -0.08 0.28 9.82 22.27 0.22 0.50 16 13 C -0.06 0.03 6.32 22.34 0.14 0.17 16 14 Cl -0.07 -0.04 28.95 -2.72 -0.08 -0.12 16 15 C -0.09 0.04 9.82 22.27 0.22 0.26 16 16 C -0.12 -0.10 9.66 22.39 0.22 0.11 16 17 N -0.30 -0.66 11.42 -48.53 -0.55 -1.21 16 18 C 0.12 -0.36 6.97 42.26 0.29 -0.06 16 19 C -0.03 0.35 9.31 23.77 0.22 0.57 16 20 C -0.10 0.91 9.54 23.77 0.23 1.13 16 21 C 0.01 -0.17 5.87 -20.14 -0.12 -0.29 16 22 C -0.12 0.50 8.36 22.56 0.19 0.69 16 23 C 0.33 0.05 4.82 22.23 0.11 0.16 16 24 F -0.22 -6.03 16.66 44.97 0.75 -5.28 16 25 F -0.16 -2.56 15.31 44.97 0.69 -1.87 16 26 F -0.17 -3.05 15.30 44.97 0.69 -2.36 16 27 F -0.16 -2.50 15.30 44.97 0.69 -1.81 16 28 F -0.17 -3.13 15.31 44.97 0.69 -2.44 16 29 C -0.12 1.11 8.62 22.34 0.19 1.30 16 30 C -0.03 0.50 10.03 22.23 0.22 0.72 16 31 C -0.08 1.52 9.41 22.56 0.21 1.73 16 32 H 0.40 -8.08 8.74 -74.06 -0.65 -8.72 16 33 H 0.11 -2.05 7.96 -2.39 -0.02 -2.07 16 34 H 0.20 -1.64 5.32 -2.91 -0.02 -1.66 16 35 H 0.16 -1.51 6.73 -2.91 -0.02 -1.53 16 36 H 0.17 -1.29 8.06 -2.91 -0.02 -1.31 16 37 H 0.15 -0.45 8.06 -2.91 -0.02 -0.48 16 38 H 0.14 0.19 7.69 -2.91 -0.02 0.16 16 39 H 0.19 -3.73 6.05 -2.91 -0.02 -3.75 16 40 H 0.12 -0.65 7.72 -2.91 -0.02 -0.67 16 41 H 0.17 -0.27 7.39 -2.91 -0.02 -0.29 16 42 H 0.19 -1.80 7.38 -2.91 -0.02 -1.82 16 43 H 0.23 -6.73 8.06 -2.91 -0.02 -6.75 16 44 H 0.22 -6.07 6.17 -2.91 -0.02 -6.09 16 Total: 0.00 -43.09 419.78 6.92 -36.17 By element: Atomic # 1 Polarization: -28.23 SS G_CDS: 1.22 Total: -27.01 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 3.68 Total: 10.05 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -1.27 Total: -2.30 kcal Atomic # 8 Polarization: 6.26 SS G_CDS: -1.92 Total: 4.35 kcal Atomic # 9 Polarization: -17.27 SS G_CDS: 3.50 Total: -13.77 kcal Atomic # 14 Polarization: -9.16 SS G_CDS: 1.79 Total: -7.37 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -43.09 6.92 -36.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_6_7941758_13158274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 525.275 kcal (2) G-P(sol) polarization free energy of solvation -43.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 482.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 489.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.84 seconds