Wall clock time and date at job start Mon Mar 8 2021 15:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.53000 * 109.46970 * 240.00305 * 2 1 3 5 5 Si 1.86297 * 109.47165 * 120.00011 * 2 1 3 6 6 C 1.86291 * 109.47283 * 300.00041 * 5 2 1 7 7 C 1.86304 * 109.47228 * 179.97438 * 5 2 1 8 8 O 1.63107 * 109.46785 * 60.00274 * 5 2 1 9 9 C 1.42905 * 113.99737 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47055 * 179.97438 * 9 8 5 11 11 O 1.42900 * 109.46992 * 64.99809 * 10 9 8 12 12 C 1.35915 * 116.99854 * 179.97438 * 11 10 9 13 13 C 1.38679 * 120.06068 * 0.02562 * 12 11 10 14 14 C 1.38181 * 119.95697 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.07042 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38279 * 120.12008 * 0.22881 * 15 14 13 23 23 C 1.38197 * 120.04176 * 359.49498 * 22 15 14 24 24 Br 1.89109 * 120.03647 * 180.23393 * 23 22 15 25 25 H 1.08995 * 109.47189 * 300.00116 * 1 2 3 26 26 H 1.09009 * 109.46947 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47583 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47251 * 300.00409 * 3 2 1 30 30 H 1.09004 * 109.46893 * 59.99813 * 3 2 1 31 31 H 1.09001 * 109.46974 * 299.99800 * 4 2 1 32 32 H 1.09000 * 109.47580 * 60.00344 * 4 2 1 33 33 H 1.08998 * 109.47057 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47446 * 179.97438 * 6 5 2 35 35 H 1.08999 * 109.47540 * 300.00058 * 6 5 2 36 36 H 1.09004 * 109.47512 * 60.00042 * 6 5 2 37 37 H 1.08996 * 109.46966 * 300.00358 * 7 5 2 38 38 H 1.09001 * 109.46838 * 60.00139 * 7 5 2 39 39 H 1.09000 * 109.46752 * 180.02562 * 7 5 2 40 40 H 1.08998 * 109.47125 * 59.99278 * 9 8 5 41 41 H 1.08996 * 109.46799 * 299.99826 * 9 8 5 42 42 H 1.08997 * 109.46843 * 304.99992 * 10 9 8 43 43 H 1.08996 * 109.47291 * 184.99969 * 10 9 8 44 44 H 1.07999 * 120.02208 * 359.97438 * 13 12 11 45 45 H 1.08000 * 119.96718 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 47 47 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 48 48 H 1.07997 * 119.97994 * 179.74883 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1814 2.6519 10 6 1.4627 -4.5991 2.5475 11 8 2.0311 -5.2565 1.4131 12 6 1.6317 -6.5337 1.1758 13 6 0.7116 -7.1414 2.0168 14 6 0.3073 -8.4402 1.7739 15 6 0.8195 -9.1346 0.6938 16 6 0.3770 -10.5512 0.4319 17 8 0.7067 -11.3687 1.5566 18 14 1.2421 -11.2017 -1.0843 19 1 2.7108 -11.1741 -0.8664 20 1 0.8066 -12.5979 -1.3421 21 1 0.8991 -10.3520 -2.2529 22 6 1.7411 -8.5334 -0.1438 23 6 2.1444 -7.2327 0.0914 24 35 3.3998 -6.4085 -1.0580 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 1.8930 -0.5141 3.9322 35 1 1.8933 1.0276 3.0423 36 1 0.4400 -0.0001 3.0423 37 1 4.3770 -1.3929 0.6307 38 1 4.3777 0.1486 1.5205 39 1 4.3773 -1.3931 2.4105 40 1 1.6638 -2.7113 3.5651 41 1 3.1173 -3.2252 2.6757 42 1 0.3797 -4.5506 2.4344 43 1 1.7091 -5.1561 3.4514 44 1 0.3118 -6.6001 2.8616 45 1 -0.4089 -8.9138 2.4290 46 1 -0.7010 -10.5714 0.2716 47 1 1.6520 -11.3977 1.7582 48 1 2.1428 -9.0793 -0.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10154_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:26:16 Heat of formation + Delta-G solvation = -143.508061 kcal Electronic energy + Delta-G solvation = -26374.542848 eV Core-core repulsion = 22599.298716 eV Total energy + Delta-G solvation = -3775.244132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 390.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42201 -39.47095 -37.96260 -37.12069 -36.83509 -33.43654 -32.20827 -30.96020 -29.97876 -29.39977 -29.10885 -27.86693 -27.38951 -26.47682 -24.89309 -23.01780 -22.26396 -20.42629 -19.52993 -18.35152 -18.15867 -17.46377 -16.71843 -16.58810 -16.17204 -16.13516 -15.94793 -15.63117 -15.38508 -15.03459 -14.87048 -14.73137 -14.47696 -14.26279 -14.05228 -13.82474 -13.59243 -13.52802 -13.44911 -13.27432 -12.97128 -12.92839 -12.89173 -12.44708 -12.39829 -12.26548 -12.17188 -12.11705 -11.85732 -11.77142 -11.71063 -11.65550 -11.56581 -11.34978 -11.06477 -10.47724 -10.40865 -10.08439 -9.95197 -9.20842 0.00349 0.13420 0.73337 1.11628 1.39426 1.41159 1.48331 1.70750 1.89484 1.98672 2.03317 2.39166 2.43191 3.40399 3.50199 3.62476 3.77648 3.88957 3.93957 4.03277 4.08340 4.11754 4.12456 4.17670 4.36559 4.46704 4.47189 4.50054 4.61997 4.63527 4.66198 4.70445 4.73262 4.80335 4.81944 4.86241 4.99994 5.06427 5.10526 5.11512 5.16008 5.29763 5.30435 5.33860 5.41444 5.47965 5.50606 5.51022 5.58975 6.20102 6.49565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.617 6.617 9 C 0.087 3.913 10 C 0.054 3.946 11 O -0.288 6.288 12 C 0.167 3.833 13 C -0.205 4.205 14 C -0.032 4.032 15 C -0.156 4.156 16 C -0.072 4.072 17 O -0.538 6.538 18 Si 0.936 3.064 19 H -0.248 1.248 20 H -0.250 1.250 21 H -0.247 1.247 22 C -0.058 4.058 23 C -0.123 4.123 24 Br -0.032 7.032 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.120 0.880 47 H 0.377 0.623 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 0.458 3.225 3.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.576 6.576 9 C 0.011 3.989 10 C -0.021 4.021 11 O -0.200 6.200 12 C 0.118 3.882 13 C -0.225 4.225 14 C -0.051 4.051 15 C -0.158 4.158 16 C -0.183 4.183 17 O -0.343 6.343 18 Si 0.758 3.242 19 H -0.171 1.171 20 H -0.174 1.174 21 H -0.170 1.170 22 C -0.078 4.078 23 C -0.203 4.203 24 Br 0.054 6.946 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.384 0.314 1.808 1.875 hybrid contribution 0.171 0.670 0.906 1.140 sum -0.213 0.983 2.715 2.895 Atomic orbital electron populations 1.21509 0.93854 1.01974 1.01739 1.25768 1.00634 1.02563 1.12760 1.21558 1.00782 0.94933 1.02109 1.21506 1.00616 1.00360 0.96630 0.76741 0.63140 0.53338 0.65031 1.27048 1.07012 1.09614 1.17689 1.27024 1.24979 1.04641 1.04595 1.85414 1.79068 1.45971 1.47181 1.22069 0.99450 0.89560 0.87782 1.23112 0.99329 0.92112 0.87560 1.86267 1.64046 1.22621 1.47084 1.18646 0.92428 0.84484 0.92637 1.21324 1.01700 0.97299 1.02158 1.20939 0.96510 0.92458 0.95170 1.20186 1.00051 0.97735 0.97818 1.24845 1.06461 0.87979 0.98982 1.86513 1.30082 1.68572 1.49160 0.85868 0.80223 0.81143 0.76935 1.17134 1.17388 1.17040 1.20854 0.95638 0.92604 0.98704 1.20943 1.04524 0.96184 0.98673 1.96759 1.54889 1.81210 1.61767 0.92760 0.92804 0.92182 0.92523 0.92499 0.92566 0.91997 0.92859 0.92731 0.91522 0.90626 0.90850 0.90721 0.90784 0.91523 0.90329 0.91308 0.90401 0.90365 0.84259 0.84425 0.86183 0.77570 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 2 C -0.37 0.02 0.53 -90.62 -0.05 -0.03 16 3 C -0.14 0.06 7.85 37.16 0.29 0.35 16 4 C -0.13 -0.10 7.85 37.16 0.29 0.19 16 5 Si 1.29 -1.42 8.45 -169.99 -1.44 -2.85 16 6 C -0.51 0.66 8.50 101.05 0.86 1.52 16 7 C -0.51 0.24 8.50 101.05 0.86 1.10 16 8 O -0.62 -0.12 8.52 -40.09 -0.34 -0.46 16 9 C 0.09 -0.15 5.51 37.16 0.20 0.06 16 10 C 0.05 -0.08 5.12 37.16 0.19 0.11 16 11 O -0.29 -0.49 9.44 -24.33 -0.23 -0.72 16 12 C 0.17 0.28 6.68 -39.20 -0.26 0.02 16 13 C -0.21 0.05 9.04 -39.44 -0.36 -0.31 16 14 C -0.03 0.01 9.60 -39.60 -0.38 -0.37 16 15 C -0.16 -0.01 5.39 -104.60 -0.56 -0.57 16 16 C -0.07 0.07 2.82 36.01 0.10 0.17 16 17 O -0.54 0.25 12.77 -35.23 -0.45 -0.20 16 18 Si 0.94 -0.52 25.07 -169.99 -4.26 -4.79 16 19 H -0.25 0.07 7.11 56.52 0.40 0.47 16 20 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 21 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 22 C -0.06 -0.07 8.40 -39.58 -0.33 -0.40 16 23 C -0.12 -0.29 6.24 -39.38 -0.25 -0.54 16 24 Br -0.03 -0.09 33.16 -68.01 -2.26 -2.35 16 25 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 26 H 0.05 0.03 8.14 -51.92 -0.42 -0.39 16 27 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 28 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 29 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 0.09 7.97 -51.93 -0.41 -0.32 16 32 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.05 0.02 7.79 -51.93 -0.40 -0.39 16 34 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 35 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 0.02 7.79 -51.93 -0.40 -0.38 16 38 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 40 H 0.08 -0.33 7.21 -51.93 -0.37 -0.71 16 41 H 0.07 -0.16 7.21 -51.93 -0.37 -0.53 16 42 H 0.08 -0.16 7.66 -51.93 -0.40 -0.56 16 43 H 0.08 -0.29 7.66 -51.93 -0.40 -0.69 16 44 H 0.14 -0.36 6.30 -52.49 -0.33 -0.69 16 45 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 46 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 48 H 0.13 0.05 4.87 -52.49 -0.26 -0.21 16 LS Contribution 401.87 15.07 6.06 6.06 Total: 0.00 -5.27 401.87 -9.49 -14.76 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -7.48 Total: -11.01 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 0.90 Total: 1.56 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -1.02 Total: -1.39 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: -5.70 Total: -7.64 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -5.27 -9.49 -14.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.748 kcal (2) G-P(sol) polarization free energy of solvation -5.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds