Wall clock time and date at job start Mon Mar 8 2021 15:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.53000 * 109.46970 * 240.00305 * 2 1 3 5 5 Si 1.86297 * 109.47165 * 120.00011 * 2 1 3 6 6 C 1.86291 * 109.47283 * 300.00041 * 5 2 1 7 7 C 1.86304 * 109.47228 * 179.97438 * 5 2 1 8 8 O 1.63107 * 109.46785 * 60.00274 * 5 2 1 9 9 C 1.42905 * 113.99737 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47055 * 179.97438 * 9 8 5 11 11 O 1.42900 * 109.46992 * 64.99809 * 10 9 8 12 12 C 1.35915 * 116.99854 * 179.97438 * 11 10 9 13 13 C 1.38679 * 120.06068 * 0.02562 * 12 11 10 14 14 C 1.38181 * 119.95697 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.07042 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38279 * 120.12008 * 0.22881 * 15 14 13 23 23 C 1.38197 * 120.04176 * 359.49498 * 22 15 14 24 24 Br 1.89109 * 120.03647 * 180.23393 * 23 22 15 25 25 H 1.08995 * 109.47189 * 300.00116 * 1 2 3 26 26 H 1.09009 * 109.46947 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47583 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47251 * 300.00409 * 3 2 1 30 30 H 1.09004 * 109.46893 * 59.99813 * 3 2 1 31 31 H 1.09001 * 109.46974 * 299.99800 * 4 2 1 32 32 H 1.09000 * 109.47580 * 60.00344 * 4 2 1 33 33 H 1.08998 * 109.47057 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47446 * 179.97438 * 6 5 2 35 35 H 1.08999 * 109.47540 * 300.00058 * 6 5 2 36 36 H 1.09004 * 109.47512 * 60.00042 * 6 5 2 37 37 H 1.08996 * 109.46966 * 300.00358 * 7 5 2 38 38 H 1.09001 * 109.46838 * 60.00139 * 7 5 2 39 39 H 1.09000 * 109.46752 * 180.02562 * 7 5 2 40 40 H 1.08998 * 109.47125 * 59.99278 * 9 8 5 41 41 H 1.08996 * 109.46799 * 299.99826 * 9 8 5 42 42 H 1.08997 * 109.46843 * 304.99992 * 10 9 8 43 43 H 1.08996 * 109.47291 * 184.99969 * 10 9 8 44 44 H 1.07999 * 120.02208 * 359.97438 * 13 12 11 45 45 H 1.08000 * 119.96718 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 47 47 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 48 48 H 1.07997 * 119.97994 * 179.74883 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1814 2.6519 10 6 1.4627 -4.5991 2.5475 11 8 2.0311 -5.2565 1.4131 12 6 1.6317 -6.5337 1.1758 13 6 0.7116 -7.1414 2.0168 14 6 0.3073 -8.4402 1.7739 15 6 0.8195 -9.1346 0.6938 16 6 0.3770 -10.5512 0.4319 17 8 0.7067 -11.3687 1.5566 18 14 1.2421 -11.2017 -1.0843 19 1 2.7108 -11.1741 -0.8664 20 1 0.8066 -12.5979 -1.3421 21 1 0.8991 -10.3520 -2.2529 22 6 1.7411 -8.5334 -0.1438 23 6 2.1444 -7.2327 0.0914 24 35 3.3998 -6.4085 -1.0580 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 1.8930 -0.5141 3.9322 35 1 1.8933 1.0276 3.0423 36 1 0.4400 -0.0001 3.0423 37 1 4.3770 -1.3929 0.6307 38 1 4.3777 0.1486 1.5205 39 1 4.3773 -1.3931 2.4105 40 1 1.6638 -2.7113 3.5651 41 1 3.1173 -3.2252 2.6757 42 1 0.3797 -4.5506 2.4344 43 1 1.7091 -5.1561 3.4514 44 1 0.3118 -6.6001 2.8616 45 1 -0.4089 -8.9138 2.4290 46 1 -0.7010 -10.5714 0.2716 47 1 1.6520 -11.3977 1.7582 48 1 2.1428 -9.0793 -0.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10154_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:26:15 Heat of formation + Delta-G solvation = -135.396749 kcal Electronic energy + Delta-G solvation = -26374.191115 eV Core-core repulsion = 22599.298716 eV Total energy + Delta-G solvation = -3774.892399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 390.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39662 -39.41595 -37.86558 -37.06583 -36.83121 -33.47155 -32.16582 -30.89052 -29.99323 -29.31235 -29.06312 -27.84510 -27.38614 -26.42865 -24.79890 -22.96130 -22.21581 -20.42122 -19.48329 -18.29224 -18.04053 -17.43256 -16.64170 -16.55534 -16.09012 -16.07696 -15.89634 -15.56676 -15.32485 -15.04280 -14.85977 -14.75291 -14.45864 -14.19979 -14.00003 -13.76933 -13.51992 -13.46584 -13.35866 -13.17475 -12.96722 -12.94171 -12.80854 -12.42348 -12.37440 -12.24929 -12.15545 -12.06076 -11.85829 -11.77869 -11.70500 -11.65866 -11.49925 -11.25656 -11.21015 -10.42168 -10.30728 -10.05575 -9.97840 -9.22562 -0.00915 0.13650 0.63600 1.16837 1.42343 1.48924 1.53394 1.78495 1.89889 2.08352 2.14717 2.44081 2.48214 3.50561 3.56000 3.72902 3.87008 4.02919 4.08813 4.10605 4.11634 4.14795 4.30381 4.35993 4.45674 4.48094 4.53271 4.64613 4.72578 4.74623 4.78161 4.79332 4.80410 4.81329 4.82808 4.84112 4.98811 5.08065 5.08353 5.10761 5.19387 5.33016 5.33153 5.39790 5.42570 5.48212 5.55707 5.59998 5.65280 6.26709 6.71161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.316 2.684 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.637 6.637 9 C 0.074 3.926 10 C 0.044 3.956 11 O -0.308 6.308 12 C 0.155 3.845 13 C -0.201 4.201 14 C -0.031 4.031 15 C -0.156 4.156 16 C -0.061 4.061 17 O -0.548 6.548 18 Si 0.957 3.043 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.069 4.069 23 C -0.144 4.144 24 Br -0.050 7.050 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.133 0.867 47 H 0.389 0.611 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 0.506 5.246 5.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.446 2.554 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.596 6.596 9 C -0.001 4.001 10 C -0.030 4.030 11 O -0.221 6.221 12 C 0.106 3.894 13 C -0.220 4.220 14 C -0.049 4.049 15 C -0.157 4.157 16 C -0.172 4.172 17 O -0.355 6.355 18 Si 0.782 3.218 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.088 4.088 23 C -0.224 4.224 24 Br 0.035 6.965 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.182 0.818 45 H 0.174 0.826 46 H 0.151 0.849 47 H 0.238 0.762 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.117 0.364 3.816 3.993 hybrid contribution 0.409 0.634 0.270 0.801 sum -0.709 0.998 4.087 4.266 Atomic orbital electron populations 1.21525 0.94129 1.01659 1.01914 1.25960 1.00509 1.03023 1.13177 1.21599 1.01147 0.94684 1.02294 1.21515 1.00758 0.99855 0.97138 0.76195 0.62109 0.52833 0.64280 1.27022 1.07045 1.09772 1.17700 1.27148 1.25925 1.04740 1.04283 1.85410 1.79313 1.46627 1.48294 1.22377 0.99858 0.89576 0.88286 1.23410 0.99659 0.92322 0.87629 1.86248 1.64649 1.22724 1.48484 1.18825 0.92974 0.84741 0.92846 1.21604 1.00743 0.97399 1.02280 1.21194 0.96364 0.92381 0.94955 1.20297 0.99590 0.98110 0.97742 1.24729 1.06989 0.87240 0.98267 1.86486 1.31429 1.68534 1.49043 0.85577 0.79765 0.79535 0.76891 1.17795 1.19353 1.18458 1.20936 0.96239 0.92442 0.99206 1.21101 1.05142 0.96869 0.99284 1.96717 1.55704 1.81594 1.62454 0.91685 0.93541 0.92718 0.92047 0.93257 0.91477 0.92994 0.93444 0.92524 0.90456 0.90407 0.90798 0.91939 0.90488 0.90933 0.87488 0.91139 0.89829 0.87887 0.81792 0.82583 0.84931 0.76161 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.13 7.85 71.98 0.56 0.43 16 2 C -0.38 -0.20 0.53 -10.79 -0.01 -0.21 16 3 C -0.14 0.08 7.85 71.98 0.56 0.65 16 4 C -0.14 -0.42 7.85 71.98 0.56 0.15 16 5 Si 1.32 -3.12 8.45 68.60 0.58 -2.54 16 6 C -0.51 2.02 8.50 113.37 0.96 2.98 16 7 C -0.52 0.39 8.50 113.37 0.96 1.35 16 8 O -0.64 -0.20 8.52 -144.34 -1.23 -1.43 16 9 C 0.07 -0.32 5.51 71.98 0.40 0.08 16 10 C 0.04 -0.17 5.12 71.98 0.37 0.20 16 11 O -0.31 -1.11 9.44 -87.94 -0.83 -1.94 16 12 C 0.15 0.53 6.68 22.52 0.15 0.68 16 13 C -0.20 0.35 9.04 22.36 0.20 0.55 16 14 C -0.03 0.07 9.60 22.26 0.21 0.28 16 15 C -0.16 0.07 5.39 -19.85 -0.11 -0.04 16 16 C -0.06 0.16 2.82 71.24 0.20 0.36 16 17 O -0.55 1.09 12.77 -148.98 -1.90 -0.81 16 18 Si 0.96 -0.50 25.07 68.60 1.72 1.22 16 19 H -0.25 -0.06 7.11 99.48 0.71 0.64 16 20 H -0.27 -0.65 7.11 99.48 0.71 0.05 16 21 H -0.26 -0.39 7.11 99.48 0.71 0.31 16 22 C -0.07 -0.20 8.40 22.27 0.19 -0.02 16 23 C -0.14 -0.81 6.24 22.40 0.14 -0.67 16 24 Br -0.05 -0.37 33.16 -20.37 -0.68 -1.04 16 25 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 26 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 27 H 0.05 0.11 7.97 -2.39 -0.02 0.09 16 28 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 29 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 31 H 0.05 0.25 7.97 -2.39 -0.02 0.23 16 32 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.13 7.79 -2.39 -0.02 0.11 16 34 H 0.08 -0.45 7.48 -2.39 -0.02 -0.47 16 35 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 36 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 37 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 38 H 0.08 -0.12 7.79 -2.39 -0.02 -0.14 16 39 H 0.07 -0.15 7.48 -2.39 -0.02 -0.17 16 40 H 0.11 -1.12 7.21 -2.39 -0.02 -1.13 16 41 H 0.07 -0.35 7.21 -2.39 -0.02 -0.37 16 42 H 0.08 -0.45 7.66 -2.39 -0.02 -0.47 16 43 H 0.10 -0.97 7.66 -2.39 -0.02 -0.99 16 44 H 0.16 -1.22 6.30 -2.91 -0.02 -1.24 16 45 H 0.16 -0.93 8.06 -2.91 -0.02 -0.96 16 46 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 47 H 0.39 -3.02 8.70 -74.06 -0.64 -3.66 16 48 H 0.13 0.27 4.87 -2.91 -0.01 0.25 16 Total: 0.00 -13.17 401.87 4.08 -9.09 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: 1.05 Total: -9.31 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.37 Total: 6.76 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -3.96 Total: -4.18 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.30 Total: -1.32 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.68 Total: -1.04 kcal Total: -13.17 4.08 -9.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.304 kcal (2) G-P(sol) polarization free energy of solvation -13.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds