Wall clock time and date at job start Mon Mar 8 2021 14:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38242 * 119.94234 * 300.00381 * 4 2 1 6 6 C 1.38240 * 120.04498 * 179.97438 * 5 4 2 7 7 Br 1.89099 * 120.03659 * 179.97438 * 6 5 4 8 8 C 1.38785 * 119.92840 * 359.97438 * 6 5 4 9 9 O 1.35926 * 120.06132 * 179.97438 * 8 6 5 10 10 C 1.42899 * 117.00351 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47083 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47063 * 179.97438 * 11 10 9 13 13 O 1.42969 * 109.46902 * 299.99749 * 11 10 9 14 14 C 1.43092 * 113.76507 * 178.79717 * 13 11 10 15 15 C 1.53266 * 108.94227 * 302.02636 * 14 13 11 16 16 H 1.08994 * 109.57716 * 294.71730 * 15 14 13 17 17 N 1.46498 * 109.57258 * 174.33834 * 15 14 13 18 18 C 1.34531 * 124.46018 * 299.69846 * 17 15 14 19 19 O 1.21446 * 125.70766 * 0.03321 * 18 17 15 20 20 C 1.47816 * 108.58223 * 179.91019 * 18 17 15 21 21 C 1.40944 * 105.87631 * 0.34491 * 20 18 17 22 22 C 1.38571 * 119.81819 * 179.79643 * 21 20 18 23 23 C 1.38609 * 119.72056 * 0.02562 * 22 21 20 24 24 C 1.38234 * 120.45964 * 359.97438 * 23 22 21 25 25 C 1.38563 * 134.29808 * 180.10099 * 20 18 17 26 26 C 1.34520 * 124.46363 * 120.00258 * 17 15 14 27 27 O 1.21450 * 125.70781 * 359.95976 * 26 17 15 28 28 C 1.53256 * 108.84398 * 54.52808 * 15 14 13 29 29 O 1.42967 * 109.47193 * 59.99956 * 11 10 9 30 30 C 1.38723 * 119.88582 * 0.02562 * 8 6 5 31 31 C 1.38141 * 119.95000 * 359.74612 * 30 8 6 32 32 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 33 33 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 34 34 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 35 35 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 36 36 H 1.07997 * 119.97783 * 359.95521 * 5 4 2 37 37 H 1.09007 * 109.46485 * 299.99975 * 10 9 8 38 38 H 1.09000 * 109.47124 * 59.99967 * 10 9 8 39 39 H 1.08990 * 109.56607 * 61.87023 * 14 13 11 40 40 H 1.08999 * 109.55651 * 182.19499 * 14 13 11 41 41 H 1.08009 * 120.14052 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.77473 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.77335 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.14398 * 0.25149 * 25 20 18 45 45 H 1.08998 * 109.55766 * 65.31188 * 28 15 14 46 46 H 1.08999 * 109.55623 * 185.52646 * 28 15 14 47 47 H 1.08002 * 120.02542 * 179.97438 * 30 8 6 48 48 H 1.08004 * 119.96692 * 180.27517 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5965 -2.0340 -1.4480 6 6 2.0558 -2.6876 -2.5762 7 35 1.5983 -4.4982 -2.8732 8 6 2.8529 -2.0135 -3.4907 9 8 3.3064 -2.6537 -4.6007 10 6 4.1224 -1.8978 -5.4978 11 6 4.5334 -2.7793 -6.6789 12 1 5.1554 -2.2026 -7.3634 13 8 5.2706 -3.9061 -6.1987 14 6 5.6790 -4.8101 -7.2300 15 6 4.4366 -5.3040 -7.9793 16 1 3.8160 -5.8962 -7.3069 17 7 4.8464 -6.1235 -9.1224 18 6 5.6093 -5.6839 -10.1396 19 8 6.0609 -4.5623 -10.2537 20 6 5.8083 -6.7953 -11.0936 21 6 5.1038 -7.8929 -10.5593 22 6 5.0950 -9.1018 -11.2366 23 6 5.7803 -9.2229 -12.4353 24 6 6.4713 -8.1463 -12.9593 25 6 6.4884 -6.9309 -12.2932 26 6 4.5046 -7.4128 -9.2962 27 8 3.8185 -8.0722 -8.5415 28 6 3.6428 -4.0905 -8.4756 29 8 3.3639 -3.2322 -7.3652 30 6 3.1870 -0.6854 -3.2695 31 6 2.7216 -0.0356 -2.1428 32 1 -0.3934 0.4417 -0.7651 33 1 1.7923 -0.5139 0.8900 34 1 1.5879 2.4585 -1.2243 35 1 1.5615 2.4679 1.2085 36 1 0.9761 -2.5577 -0.7359 37 1 3.5600 -1.0389 -5.8642 38 1 5.0138 -1.5521 -4.9744 39 1 6.3434 -4.2957 -7.9242 40 1 6.1989 -5.6591 -6.7862 41 1 4.5565 -9.9462 -10.8321 42 1 5.7744 -10.1648 -12.9637 43 1 7.0018 -8.2531 -13.8939 44 1 7.0297 -6.0931 -12.7074 45 1 4.2301 -3.5488 -9.2170 46 1 2.7076 -4.4251 -8.9243 47 1 3.8076 -0.1587 -3.9794 48 1 2.9779 0.9997 -1.9725 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10154_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:44:21 Heat of formation + Delta-G solvation = -110.697419 kcal Electronic energy + Delta-G solvation = -38968.950751 eV Core-core repulsion = 33583.592125 eV Total energy + Delta-G solvation = -5385.358626 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 476.044 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.72789 -41.64115 -41.04857 -39.97601 -39.55037 -39.19422 -37.41543 -37.19473 -37.07748 -34.58987 -33.59279 -32.18027 -32.10882 -31.44679 -30.42136 -29.71675 -27.50581 -26.50284 -26.37087 -25.51999 -24.62323 -23.50499 -23.15842 -22.52269 -22.14527 -21.02918 -19.58952 -19.13739 -18.99459 -18.81355 -18.43028 -17.84390 -17.67318 -17.49151 -16.99866 -16.87056 -16.71598 -16.53189 -16.21932 -16.15239 -16.06270 -15.90647 -15.67528 -15.50556 -15.35066 -15.08486 -14.85480 -14.78106 -14.69170 -14.52470 -14.45924 -14.02183 -13.81701 -13.61223 -13.48946 -13.29798 -12.73870 -12.68552 -12.51789 -12.33808 -12.25946 -12.19500 -12.06540 -11.88450 -11.72604 -11.70645 -11.64915 -11.24088 -10.96061 -10.87045 -10.62424 -10.27588 -10.26203 -9.96302 -9.28783 -4.90997 -1.13412 -0.07756 -0.04295 0.13476 0.64659 0.85696 0.86726 1.32438 1.59595 1.61345 1.91730 1.99153 2.20162 2.30008 2.40344 2.42811 2.55549 3.05096 3.13991 3.21308 3.39253 3.45593 3.52020 3.59398 3.66544 3.66599 3.80444 3.87850 3.91082 4.02627 4.03207 4.09255 4.13182 4.15661 4.15826 4.19980 4.27309 4.35343 4.41085 4.43504 4.52748 4.59460 4.64709 4.78867 4.86190 4.86279 5.02013 5.16776 5.23139 5.23582 5.32549 5.40663 5.53177 5.63860 5.74295 5.89960 6.16163 6.32306 6.48729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.082 4.082 3 Si 0.775 3.225 4 C -0.152 4.152 5 C -0.035 4.035 6 C -0.145 4.145 7 Br -0.053 7.053 8 C 0.151 3.849 9 O -0.303 6.303 10 C 0.066 3.934 11 C 0.236 3.764 12 H 0.110 0.890 13 O -0.384 6.384 14 C 0.054 3.946 15 C 0.076 3.924 16 H 0.111 0.889 17 N -0.569 5.569 18 C 0.577 3.423 19 O -0.479 6.479 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.046 4.046 23 C -0.084 4.084 24 C -0.083 4.083 25 C -0.041 4.041 26 C 0.574 3.426 27 O -0.491 6.491 28 C 0.053 3.947 29 O -0.385 6.385 30 C -0.195 4.195 31 C -0.055 4.055 32 H 0.386 0.614 33 H 0.124 0.876 34 H -0.275 1.275 35 H -0.305 1.305 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.172 0.828 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 1.507 -8.272 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.190 4.190 3 Si 0.679 3.321 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.225 4.225 7 Br 0.032 6.968 8 C 0.103 3.897 9 O -0.216 6.216 10 C -0.009 4.009 11 C 0.142 3.858 12 H 0.127 0.873 13 O -0.303 6.303 14 C -0.023 4.023 15 C -0.027 4.027 16 H 0.129 0.871 17 N -0.314 5.314 18 C 0.369 3.631 19 O -0.351 6.351 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.064 4.064 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.060 4.060 26 C 0.365 3.635 27 O -0.364 6.364 28 C -0.024 4.024 29 O -0.305 6.305 30 C -0.214 4.214 31 C -0.072 4.072 32 H 0.236 0.764 33 H 0.142 0.858 34 H -0.201 1.201 35 H -0.234 1.234 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.169 0.831 42 H 0.193 0.807 43 H 0.195 0.805 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.127 0.873 47 H 0.189 0.811 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.825 1.489 -7.217 10.044 hybrid contribution -1.243 -0.029 -0.307 1.281 sum 5.582 1.460 -7.525 9.482 Atomic orbital electron populations 1.86581 1.18660 1.80416 1.50181 1.25293 0.83380 1.12238 0.98132 0.94124 0.90007 0.71223 0.76724 1.20275 1.02149 0.94125 0.98852 1.20871 0.96259 0.94274 0.94056 1.21251 1.08312 0.92884 1.00046 1.96734 1.92405 1.10899 1.96794 1.18858 0.92716 0.91648 0.86518 1.86318 1.64546 1.39945 1.30778 1.23285 0.96370 0.93455 0.87766 1.23997 0.83021 0.86772 0.92043 0.87315 1.88244 1.72249 1.36139 1.33682 1.22974 0.93970 0.94601 0.90803 1.22564 0.99125 0.93856 0.87113 0.87126 1.46472 1.48860 1.13280 1.22760 1.18710 0.75963 0.87571 0.80904 1.90785 1.47598 1.21131 1.75612 1.20451 1.04060 0.93273 0.98417 1.20426 1.03008 0.97300 0.95622 1.21159 0.96273 0.94993 0.93996 1.21956 0.93468 1.01106 0.93614 1.21980 0.96618 0.90861 1.00633 1.21174 0.94574 0.99698 0.90530 1.18839 0.78184 0.80572 0.85874 1.90830 1.35597 1.60078 1.49908 1.22970 1.01530 0.89213 0.88701 1.88239 1.32624 1.65105 1.44493 1.21518 1.05875 0.92417 1.01577 1.21228 0.93721 1.00450 0.91833 0.76443 0.85841 1.20102 1.23355 0.84566 0.86902 0.86550 0.90379 0.87221 0.83076 0.80673 0.80500 0.82449 0.90349 0.87336 0.81094 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.59 12.77 -148.98 -1.90 -3.49 16 2 C -0.08 0.07 2.82 71.24 0.20 0.28 16 3 Si 0.77 -2.83 29.78 68.60 2.04 -0.79 16 4 C -0.15 -0.04 5.39 -19.85 -0.11 -0.14 16 5 C -0.03 -0.16 9.35 22.27 0.21 0.05 16 6 C -0.14 -1.06 6.24 22.40 0.14 -0.92 16 7 Br -0.05 -0.56 33.16 -20.37 -0.68 -1.23 16 8 C 0.15 0.70 6.68 22.52 0.15 0.85 16 9 O -0.30 -1.89 9.26 -73.13 -0.68 -2.57 16 10 C 0.07 -0.10 4.83 71.98 0.35 0.24 16 11 C 0.24 0.39 3.59 71.98 0.26 0.65 16 12 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 13 O -0.38 -2.16 10.43 -121.89 -1.27 -3.43 16 14 C 0.05 0.20 6.33 72.07 0.46 0.65 16 15 C 0.08 0.39 3.07 45.17 0.14 0.52 16 16 H 0.11 0.97 7.60 -2.39 -0.02 0.95 16 17 N -0.57 -2.61 2.53 -739.56 -1.87 -4.48 16 18 C 0.58 2.06 7.35 86.82 0.64 2.70 16 19 O -0.48 -2.96 15.16 -3.55 -0.05 -3.01 16 20 C -0.16 0.02 6.40 -20.00 -0.13 -0.11 16 21 C -0.16 -0.17 6.41 -20.00 -0.13 -0.30 16 22 C -0.05 0.20 10.09 22.44 0.23 0.42 16 23 C -0.08 0.82 10.04 22.36 0.22 1.05 16 24 C -0.08 0.87 10.04 22.36 0.22 1.09 16 25 C -0.04 0.24 10.09 22.44 0.23 0.47 16 26 C 0.57 3.68 8.02 86.82 0.70 4.38 16 27 O -0.49 -6.18 17.44 -3.56 -0.06 -6.24 16 28 C 0.05 0.21 6.32 72.07 0.46 0.66 16 29 O -0.39 -2.27 10.43 -121.89 -1.27 -3.54 16 30 C -0.19 0.41 9.04 22.36 0.20 0.61 16 31 C -0.05 0.17 8.66 22.26 0.19 0.37 16 32 H 0.39 -1.07 8.70 -74.06 -0.64 -1.71 16 33 H 0.12 -0.25 7.96 -2.38 -0.02 -0.27 16 34 H -0.27 0.26 7.11 99.48 0.71 0.97 16 35 H -0.31 -1.47 7.11 99.48 0.71 -0.76 16 36 H 0.14 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.11 -0.72 7.66 -2.38 -0.02 -0.73 16 38 H 0.12 -0.79 7.66 -2.39 -0.02 -0.81 16 39 H 0.08 0.21 6.71 -2.39 -0.02 0.19 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.15 -0.94 8.06 -2.91 -0.02 -0.97 16 42 H 0.18 -2.77 8.06 -2.91 -0.02 -2.80 16 43 H 0.18 -2.95 8.06 -2.91 -0.02 -2.97 16 44 H 0.16 -1.41 8.06 -2.91 -0.02 -1.43 16 45 H 0.08 0.23 6.63 -2.39 -0.02 0.21 16 46 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 47 H 0.17 -1.54 6.30 -2.91 -0.02 -1.55 16 48 H 0.16 -1.44 4.87 -2.91 -0.01 -1.45 16 Total: 0.00 -26.88 424.74 -0.66 -27.55 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: 0.46 Total: -12.28 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 4.62 Total: 13.52 kcal Atomic # 7 Polarization: -2.61 SS G_CDS: -1.87 Total: -4.48 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -5.24 Total: -22.28 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.04 Total: -0.79 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.68 Total: -1.23 kcal Total: -26.88 -0.66 -27.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.152 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds