Wall clock time and date at job start Mon Mar 8 2021 11:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 C 1.52995 * 109.47298 * 239.99806 * 2 1 3 5 5 Si 1.86298 * 109.46934 * 119.99437 * 2 1 3 6 6 C 1.86293 * 109.47523 * 300.00310 * 5 2 1 7 7 C 1.86301 * 109.47172 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.46900 * 60.00484 * 5 2 1 9 9 C 1.42904 * 113.99950 * 179.97438 * 8 5 2 10 10 O 1.42900 * 109.47191 * 179.97438 * 9 8 5 11 11 C 1.35914 * 116.99871 * 75.00485 * 10 9 8 12 12 C 1.38678 * 120.06015 * 359.97438 * 11 10 9 13 13 C 1.38181 * 119.95680 * 179.97438 * 12 11 10 14 14 C 1.38241 * 120.07059 * 0.03195 * 13 12 11 15 15 C 1.50706 * 119.93825 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.46938 * 299.99525 * 15 14 13 17 17 Si 1.86299 * 109.46748 * 179.97438 * 15 14 13 18 18 H 1.48503 * 109.47188 * 60.00070 * 17 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47505 * 299.99883 * 17 15 14 21 21 C 1.38279 * 120.12009 * 0.24319 * 14 13 12 22 22 C 1.38197 * 120.04539 * 359.46139 * 21 14 13 23 23 Br 1.89099 * 120.04178 * 180.25362 * 22 21 14 24 24 H 1.08996 * 109.47229 * 300.00634 * 1 2 3 25 25 H 1.09000 * 109.46759 * 60.00157 * 1 2 3 26 26 H 1.08995 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47225 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47250 * 299.99542 * 3 2 1 29 29 H 1.08996 * 109.47661 * 59.99630 * 3 2 1 30 30 H 1.08995 * 109.46953 * 299.99743 * 4 2 1 31 31 H 1.09000 * 109.47185 * 60.00298 * 4 2 1 32 32 H 1.09002 * 109.47162 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47291 * 180.02562 * 6 5 2 34 34 H 1.09009 * 109.47129 * 300.00220 * 6 5 2 35 35 H 1.08995 * 109.47197 * 59.99695 * 6 5 2 36 36 H 1.09009 * 109.47032 * 300.00611 * 7 5 2 37 37 H 1.09004 * 109.47045 * 59.99872 * 7 5 2 38 38 H 1.08997 * 109.47416 * 180.02562 * 7 5 2 39 39 H 1.09004 * 109.46865 * 60.00003 * 9 8 5 40 40 H 1.08997 * 109.47643 * 300.00265 * 9 8 5 41 41 H 1.07999 * 120.02210 * 359.96235 * 12 11 10 42 42 H 1.07999 * 119.96701 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.47161 * 59.99791 * 15 14 13 44 44 H 0.96698 * 114.00355 * 299.99977 * 16 15 14 45 45 H 1.07998 * 119.98018 * 179.72434 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8781 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8774 1.5217 8 8 1.6073 -2.4158 1.5212 9 6 2.0294 -3.1815 2.6516 10 8 1.5009 -4.5056 2.5542 11 6 2.0883 -5.3399 1.6563 12 6 3.1506 -4.8933 0.8848 13 6 3.7465 -5.7435 -0.0270 14 6 3.2843 -7.0384 -0.1714 15 6 3.9361 -7.9629 -1.1672 16 8 3.8225 -7.4069 -2.4786 17 14 3.0901 -9.6221 -1.1202 18 1 1.6551 -9.4560 -1.4644 19 1 3.7318 -10.5330 -2.1019 20 1 3.2085 -10.1998 0.2428 21 6 2.2216 -7.4851 0.5923 22 6 1.6260 -6.6409 1.5101 23 35 0.1773 -7.2541 2.5594 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7209 -1.2494 33 1 1.8936 -0.5134 3.9323 34 1 1.8932 1.0279 3.0422 35 1 0.4400 0.0002 3.0422 36 1 4.3777 -1.3910 0.6316 37 1 4.3769 0.1504 1.5218 38 1 4.3773 -1.3916 2.4115 39 1 1.6652 -2.7115 3.5652 40 1 3.1183 -3.2253 2.6748 41 1 3.5118 -3.8817 0.9965 42 1 4.5740 -5.3961 -0.6277 43 1 4.9893 -8.0852 -0.9143 44 1 2.9108 -7.2703 -2.7704 45 1 1.8596 -8.4957 0.4745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10154_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:45:31 Heat of formation + Delta-G solvation = -133.543826 kcal Electronic energy + Delta-G solvation = -25095.631195 eV Core-core repulsion = 21476.356763 eV Total energy + Delta-G solvation = -3619.274431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.066 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51735 -39.53833 -37.56327 -36.85010 -36.72992 -33.42965 -32.08171 -30.29954 -29.44950 -29.08309 -27.84505 -27.51911 -27.39562 -25.96856 -23.74064 -22.36029 -20.47523 -19.57704 -18.44223 -18.27396 -17.85843 -16.60115 -16.31032 -16.15351 -15.93699 -15.84648 -15.27316 -15.04199 -14.90412 -14.80218 -14.64478 -14.44782 -14.07437 -13.87230 -13.62136 -13.41530 -13.38329 -13.19055 -12.97053 -12.93144 -12.89993 -12.48147 -12.39777 -12.33081 -12.14949 -11.93607 -11.87132 -11.78839 -11.67698 -11.59350 -11.48276 -11.24905 -10.43173 -10.41779 -10.09244 -9.98421 -9.32056 -0.02693 0.09313 0.59725 1.16656 1.30104 1.43461 1.49547 1.68550 1.90537 2.05757 2.08837 2.42066 2.47452 3.49015 3.54925 3.72002 3.75699 3.94974 4.07629 4.09415 4.11433 4.12864 4.36959 4.44698 4.51637 4.69028 4.71971 4.73335 4.77945 4.78192 4.81210 4.81828 4.82992 4.99587 5.02278 5.08862 5.09263 5.12033 5.25564 5.31079 5.36480 5.40135 5.45730 5.49001 5.59676 5.65287 6.09615 6.69796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.323 2.677 6 C -0.522 4.522 7 C -0.518 4.518 8 O -0.661 6.661 9 C 0.231 3.769 10 O -0.303 6.303 11 C 0.153 3.847 12 C -0.190 4.190 13 C -0.034 4.034 14 C -0.150 4.150 15 C -0.062 4.062 16 O -0.548 6.548 17 Si 0.957 3.043 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.256 1.256 21 C -0.070 4.070 22 C -0.140 4.140 23 Br -0.046 7.046 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.389 0.611 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 2.851 0.712 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.455 2.545 6 C -0.624 4.624 7 C -0.621 4.621 8 O -0.621 6.621 9 C 0.120 3.880 10 O -0.217 6.217 11 C 0.106 3.894 12 C -0.209 4.209 13 C -0.052 4.052 14 C -0.152 4.152 15 C -0.174 4.174 16 O -0.355 6.355 17 Si 0.782 3.218 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.180 1.180 21 C -0.089 4.089 22 C -0.219 4.219 23 Br 0.039 6.961 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.153 0.847 44 H 0.238 0.762 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.943 1.572 1.147 3.528 hybrid contribution -0.217 1.087 -0.237 1.133 sum 2.726 2.659 0.910 3.915 Atomic orbital electron populations 1.21546 0.94664 1.01481 1.01829 1.25947 1.00074 1.03186 1.13274 1.21607 1.01503 0.94508 1.02208 1.21535 1.01273 0.99766 0.96756 0.76017 0.63040 0.51244 0.64227 1.27125 1.06971 1.10258 1.18037 1.27061 1.23947 1.05864 1.05206 1.85321 1.80451 1.47327 1.49037 1.23953 0.97837 0.77256 0.88995 1.86356 1.58728 1.22646 1.53939 1.18780 0.91778 0.88767 0.90117 1.21553 0.97500 1.02499 0.99383 1.21191 0.98005 0.91572 0.94481 1.20325 0.97601 0.96971 1.00294 1.24778 1.06970 1.03245 0.82406 1.86486 1.33691 1.85739 1.29600 0.85580 0.79453 0.76306 0.80476 1.17935 1.19304 1.18029 1.20951 0.95077 0.99010 0.93907 1.21110 1.01219 0.95075 1.04540 1.96722 1.42015 1.88222 1.69105 0.92084 0.93436 0.93001 0.91389 0.93279 0.91797 0.92873 0.93558 0.91543 0.90469 0.89995 0.91286 0.90453 0.89782 0.90345 0.85026 0.89388 0.82465 0.82568 0.84713 0.76213 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 2 C -0.38 0.86 0.53 -10.79 -0.01 0.86 16 3 C -0.14 0.45 7.85 71.98 0.56 1.02 16 4 C -0.14 0.16 7.85 71.98 0.56 0.73 16 5 Si 1.32 -7.37 8.45 68.60 0.58 -6.79 16 6 C -0.52 2.57 8.50 113.37 0.96 3.53 16 7 C -0.52 3.64 8.50 113.37 0.96 4.60 16 8 O -0.66 0.99 8.03 -126.21 -1.01 -0.02 16 9 C 0.23 -0.72 5.42 113.37 0.61 -0.11 16 10 O -0.30 -1.15 9.73 -69.81 -0.68 -1.83 16 11 C 0.15 0.62 6.62 22.52 0.15 0.77 16 12 C -0.19 0.04 8.78 22.36 0.20 0.24 16 13 C -0.03 0.05 9.60 22.26 0.21 0.26 16 14 C -0.15 0.04 5.39 -19.85 -0.11 -0.06 16 15 C -0.06 0.16 2.82 71.24 0.20 0.37 16 16 O -0.55 0.89 12.77 -148.98 -1.90 -1.02 16 17 Si 0.96 -0.80 25.07 68.60 1.72 0.92 16 18 H -0.26 -0.06 7.11 99.48 0.71 0.64 16 19 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 20 H -0.26 -0.15 7.11 99.48 0.71 0.55 16 21 C -0.07 -0.19 8.40 22.27 0.19 -0.01 16 22 C -0.14 -0.77 6.24 22.40 0.14 -0.63 16 23 Br -0.05 -0.30 33.16 -20.37 -0.68 -0.98 16 24 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 25 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.05 0.09 7.96 -2.39 -0.02 0.07 16 27 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 28 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 -0.30 7.79 -2.39 -0.02 -0.31 16 30 H 0.05 0.01 7.96 -2.39 -0.02 -0.01 16 31 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 33 H 0.08 -0.52 7.48 -2.39 -0.02 -0.54 16 34 H 0.08 -0.45 7.79 -2.38 -0.02 -0.47 16 35 H 0.07 -0.22 7.79 -2.39 -0.02 -0.23 16 36 H 0.08 -0.53 7.79 -2.38 -0.02 -0.55 16 37 H 0.08 -0.61 7.79 -2.38 -0.02 -0.63 16 38 H 0.08 -0.69 7.48 -2.39 -0.02 -0.71 16 39 H 0.13 -1.04 7.21 -2.38 -0.02 -1.06 16 40 H 0.09 -0.74 5.77 -2.39 -0.01 -0.75 16 41 H 0.16 -0.72 5.86 -2.91 -0.02 -0.73 16 42 H 0.16 -0.82 8.06 -2.91 -0.02 -0.85 16 43 H 0.14 -0.74 7.96 -2.39 -0.02 -0.75 16 44 H 0.39 -2.73 8.70 -74.06 -0.64 -3.37 16 45 H 0.14 0.20 4.87 -2.91 -0.01 0.18 16 Total: 0.00 -12.11 378.96 4.33 -7.78 By element: Atomic # 1 Polarization: -11.26 SS G_CDS: 1.09 Total: -10.16 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.21 Total: 12.11 kcal Atomic # 8 Polarization: 0.73 SS G_CDS: -3.60 Total: -2.87 kcal Atomic # 14 Polarization: -8.17 SS G_CDS: 2.30 Total: -5.87 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.68 Total: -0.98 kcal Total: -12.11 4.33 -7.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.767 kcal (2) G-P(sol) polarization free energy of solvation -12.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds