Wall clock time and date at job start Mon Mar 8 2021 15:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35911 * 117.00088 * 179.97438 * 10 9 8 12 12 C 1.38676 * 120.06101 * 359.73063 * 11 10 9 13 13 C 1.38193 * 119.95398 * 179.71828 * 12 11 10 14 14 C 1.38239 * 120.06963 * 0.53056 * 13 12 11 15 15 C 1.50696 * 119.93911 * 179.74550 * 14 13 12 16 16 O 1.42899 * 109.47314 * 120.02320 * 15 14 13 17 17 Si 1.86301 * 109.47135 * 0.02562 * 15 14 13 18 18 H 1.48497 * 109.46904 * 60.00459 * 17 15 14 19 19 H 1.48499 * 109.46755 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47175 * 299.99835 * 17 15 14 21 21 C 1.38286 * 120.11939 * 359.76531 * 14 13 12 22 22 C 1.38199 * 120.04711 * 359.95656 * 21 14 13 23 23 Br 1.89096 * 120.03677 * 180.02562 * 22 21 14 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.07996 * 120.02016 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.96333 * 180.27770 * 13 12 11 41 41 H 1.09001 * 109.47064 * 240.02159 * 15 14 13 42 42 H 0.96707 * 113.99872 * 299.99696 * 16 15 14 43 43 H 1.07996 * 119.97791 * 179.97438 * 21 14 13 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9374 -3.5033 6.0756 12 6 5.1780 -4.0804 7.0823 13 6 5.8020 -4.7012 8.1477 14 6 7.1822 -4.7379 8.2163 15 6 7.8596 -5.4106 9.3823 16 8 8.6781 -6.4805 8.9053 17 14 6.5697 -6.0863 10.5444 18 1 5.7248 -7.0737 9.8260 19 1 7.2373 -6.7487 11.6937 20 1 5.7192 -4.9747 11.0403 21 6 7.9424 -4.1581 7.2172 22 6 7.3235 -3.5410 6.1467 23 35 8.3632 -2.7488 4.7803 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0997 -4.0482 7.0317 40 1 5.2108 -5.1545 8.9295 41 1 8.4800 -4.6859 9.9096 42 1 8.1912 -7.1641 8.4249 43 1 9.0205 -4.1877 7.2734 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10154_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:36:18 Heat of formation + Delta-G solvation = -61.610787 kcal Electronic energy + Delta-G solvation = -24866.233877 eV Core-core repulsion = 21211.393945 eV Total energy + Delta-G solvation = -3654.839932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52876 -40.16570 -39.06750 -37.27103 -33.74907 -32.96229 -31.91384 -31.68949 -30.30178 -29.60127 -28.46172 -28.43837 -27.69786 -26.23043 -23.93756 -23.51642 -22.45793 -21.91932 -19.51566 -18.49955 -17.80909 -17.16557 -17.14868 -16.51547 -16.21116 -16.00255 -15.82322 -15.61315 -15.20685 -14.66202 -14.57561 -14.39960 -14.21897 -14.16699 -13.97017 -13.92287 -13.81098 -13.72458 -13.49115 -13.27838 -13.27757 -13.12325 -12.75635 -12.36942 -12.29621 -12.24918 -12.13248 -11.87122 -11.80809 -11.71904 -11.08749 -11.06763 -10.92609 -10.86331 -10.49099 -9.94231 -9.80646 -9.72636 -9.26816 -0.05963 0.12499 0.12628 0.52163 0.71591 1.09559 1.35816 1.42857 1.67547 1.82521 1.83356 1.84702 2.15585 2.38591 2.51992 2.98664 3.37745 3.47538 3.59490 3.70904 3.72541 3.78407 3.99821 4.07927 4.16673 4.21783 4.35946 4.47503 4.53507 4.60958 4.64449 4.68142 4.69401 4.72986 4.73923 4.74243 4.74718 4.82556 4.96854 4.96970 5.12182 5.19477 5.36902 5.43477 5.47198 5.48185 5.51374 5.58302 5.59728 6.07740 6.13886 6.49110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.104 4.104 8 C -0.089 4.089 9 C 0.098 3.902 10 O -0.292 6.292 11 C 0.164 3.836 12 C -0.200 4.200 13 C -0.068 4.068 14 C -0.155 4.155 15 C -0.075 4.075 16 O -0.538 6.538 17 Si 0.948 3.052 18 H -0.251 1.251 19 H -0.251 1.251 20 H -0.250 1.250 21 C -0.022 4.022 22 C -0.127 4.127 23 Br -0.030 7.030 24 C -0.104 4.104 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.377 0.623 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -0.221 0.194 3.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.110 4.110 7 C -0.122 4.122 8 C -0.089 4.089 9 C 0.024 3.976 10 O -0.205 6.205 11 C 0.115 3.885 12 C -0.219 4.219 13 C -0.086 4.086 14 C -0.157 4.157 15 C -0.186 4.186 16 O -0.343 6.343 17 Si 0.770 3.230 18 H -0.174 1.174 19 H -0.175 1.175 20 H -0.174 1.174 21 C -0.042 4.042 22 C -0.207 4.207 23 Br 0.055 6.945 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.224 0.776 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.464 0.172 0.413 3.493 hybrid contribution -0.492 -0.419 0.035 0.647 sum -3.956 -0.248 0.448 3.989 Atomic orbital electron populations 1.26121 1.20411 1.04579 1.04520 0.78186 0.66839 0.66148 0.63695 1.26137 1.06528 1.18531 1.04574 1.26138 1.06527 1.08038 1.15066 1.27487 1.02918 0.99510 1.10187 1.21076 0.97490 0.94677 0.97719 1.21138 0.98665 0.99907 0.92531 1.19388 1.01128 0.94161 0.94247 1.21731 0.78312 1.00623 0.96982 1.86304 1.21242 1.71952 1.40999 1.18646 0.90775 0.91747 0.87297 1.21172 1.00448 1.04534 0.95795 1.20966 0.93966 0.96584 0.97133 1.20219 0.93340 1.03497 0.98628 1.24922 1.02731 0.92223 0.98709 1.86529 1.37020 1.34154 1.76557 0.85714 0.77210 0.80886 0.79144 1.17432 1.17516 1.17391 1.20857 1.00786 0.92289 0.90227 1.21160 0.91320 1.09281 0.98934 1.96770 1.68465 1.81061 1.48192 1.21140 0.98649 0.93486 0.98962 1.21078 0.97488 0.99771 0.92624 0.91171 0.90993 0.91169 0.91014 0.90928 0.91168 0.91169 0.90928 0.91013 0.85870 0.86135 0.90739 0.90749 0.84245 0.85361 0.86218 0.77584 0.83709 0.86130 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.75 8.65 101.05 0.87 1.62 16 2 Si 1.06 -2.68 12.32 -169.99 -2.09 -4.77 16 3 C -0.45 0.76 8.53 101.05 0.86 1.63 16 4 C -0.45 0.77 8.53 101.05 0.86 1.63 16 5 C -0.36 0.07 4.59 -39.58 -0.18 -0.11 16 6 C -0.09 -0.03 9.29 -39.58 -0.37 -0.39 16 7 C -0.10 -0.09 9.70 -39.58 -0.38 -0.48 16 8 C -0.09 -0.09 5.51 -104.63 -0.58 -0.67 16 9 C 0.10 -0.01 4.86 36.00 0.18 0.17 16 10 O -0.29 -0.68 9.46 -19.46 -0.18 -0.86 16 11 C 0.16 0.31 6.68 -39.20 -0.26 0.05 16 12 C -0.20 -0.01 9.04 -39.44 -0.36 -0.37 16 13 C -0.07 0.02 8.66 -39.60 -0.34 -0.32 16 14 C -0.16 -0.01 5.39 -104.61 -0.56 -0.57 16 15 C -0.08 0.08 2.82 36.00 0.10 0.18 16 16 O -0.54 0.11 12.77 -35.23 -0.45 -0.34 16 17 Si 0.95 -1.24 25.07 -169.99 -4.26 -5.50 16 18 H -0.25 0.31 7.11 56.52 0.40 0.71 16 19 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 20 H -0.25 0.22 7.11 56.52 0.40 0.62 16 21 C -0.02 -0.03 9.35 -39.58 -0.37 -0.40 16 22 C -0.13 -0.31 6.24 -39.37 -0.25 -0.55 16 23 Br -0.03 -0.09 33.16 -68.01 -2.26 -2.35 16 24 C -0.10 -0.10 9.70 -39.58 -0.38 -0.48 16 25 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 32 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 36 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 37 H 0.07 -0.11 7.59 -51.93 -0.39 -0.51 16 38 H 0.07 -0.12 7.62 -51.93 -0.40 -0.51 16 39 H 0.14 -0.30 6.30 -52.49 -0.33 -0.63 16 40 H 0.13 -0.25 4.87 -52.49 -0.26 -0.51 16 41 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 42 H 0.38 -1.25 8.70 45.56 0.40 -0.85 16 43 H 0.15 0.08 8.06 -52.49 -0.42 -0.35 16 44 H 0.12 -0.04 8.06 -52.49 -0.42 -0.47 16 45 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 LS Contribution 394.12 15.07 5.94 5.94 Total: 0.00 -5.75 394.12 -10.76 -16.51 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -5.93 Total: -9.17 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.53 Total: 0.54 kcal Atomic # 8 Polarization: -0.58 SS G_CDS: -0.63 Total: -1.21 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: -6.36 Total: -10.27 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.35 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -5.75 -10.76 -16.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.097 kcal (2) G-P(sol) polarization free energy of solvation -5.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds