Wall clock time and date at job start Mon Mar 8 2021 15:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35911 * 117.00088 * 179.97438 * 10 9 8 12 12 C 1.38676 * 120.06101 * 359.73063 * 11 10 9 13 13 C 1.38193 * 119.95398 * 179.71828 * 12 11 10 14 14 C 1.38239 * 120.06963 * 0.53056 * 13 12 11 15 15 C 1.50696 * 119.93911 * 179.74550 * 14 13 12 16 16 O 1.42899 * 109.47314 * 120.02320 * 15 14 13 17 17 Si 1.86301 * 109.47135 * 0.02562 * 15 14 13 18 18 H 1.48497 * 109.46904 * 60.00459 * 17 15 14 19 19 H 1.48499 * 109.46755 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47175 * 299.99835 * 17 15 14 21 21 C 1.38286 * 120.11939 * 359.76531 * 14 13 12 22 22 C 1.38199 * 120.04711 * 359.95656 * 21 14 13 23 23 Br 1.89096 * 120.03677 * 180.02562 * 22 21 14 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.07996 * 120.02016 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.96333 * 180.27770 * 13 12 11 41 41 H 1.09001 * 109.47064 * 240.02159 * 15 14 13 42 42 H 0.96707 * 113.99872 * 299.99696 * 16 15 14 43 43 H 1.07996 * 119.97791 * 179.97438 * 21 14 13 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9374 -3.5033 6.0756 12 6 5.1780 -4.0804 7.0823 13 6 5.8020 -4.7012 8.1477 14 6 7.1822 -4.7379 8.2163 15 6 7.8596 -5.4106 9.3823 16 8 8.6781 -6.4805 8.9053 17 14 6.5697 -6.0863 10.5444 18 1 5.7248 -7.0737 9.8260 19 1 7.2373 -6.7487 11.6937 20 1 5.7192 -4.9747 11.0403 21 6 7.9424 -4.1581 7.2172 22 6 7.3235 -3.5410 6.1467 23 35 8.3632 -2.7488 4.7803 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0997 -4.0482 7.0317 40 1 5.2108 -5.1545 8.9295 41 1 8.4800 -4.6859 9.9096 42 1 8.1912 -7.1641 8.4249 43 1 9.0205 -4.1877 7.2734 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10154_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:36:17 Heat of formation + Delta-G solvation = -51.388471 kcal Electronic energy + Delta-G solvation = -24865.790604 eV Core-core repulsion = 21211.393945 eV Total energy + Delta-G solvation = -3654.396659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54840 -40.13906 -39.06265 -37.24040 -33.78207 -32.96613 -31.88549 -31.68781 -30.39365 -29.45209 -28.30770 -28.27885 -27.66542 -26.19188 -23.94837 -23.49376 -22.46403 -21.89680 -19.52698 -18.46970 -17.77867 -17.16541 -17.13343 -16.48456 -16.14799 -15.96772 -15.80760 -15.61548 -15.14899 -14.62201 -14.61967 -14.34928 -14.08104 -14.06805 -13.92286 -13.82686 -13.72185 -13.69085 -13.42925 -13.14195 -13.12783 -12.97896 -12.70699 -12.29914 -12.25662 -12.23897 -12.06708 -11.91242 -11.82176 -11.68010 -11.25272 -10.93311 -10.78329 -10.77045 -10.42757 -9.99826 -9.80856 -9.69763 -9.31723 -0.09687 0.10258 0.14442 0.51954 0.60250 1.19007 1.47480 1.52033 1.82730 1.92959 1.94235 2.01113 2.23408 2.36591 2.65812 3.00116 3.47292 3.52003 3.65246 3.75481 3.79900 3.83595 4.03607 4.11255 4.22892 4.27575 4.35009 4.52315 4.60809 4.63492 4.70768 4.83057 4.83720 4.83832 4.87611 4.88168 4.88337 4.89909 4.96972 5.00053 5.15402 5.18769 5.39317 5.47796 5.55892 5.58215 5.59289 5.67114 5.69523 6.10875 6.13767 6.70776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.105 4.105 7 C -0.120 4.120 8 C -0.102 4.102 9 C 0.096 3.904 10 O -0.310 6.310 11 C 0.151 3.849 12 C -0.197 4.197 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.077 4.077 16 O -0.553 6.553 17 Si 0.982 3.018 18 H -0.247 1.247 19 H -0.276 1.276 20 H -0.252 1.252 21 C -0.029 4.029 22 C -0.144 4.144 23 Br -0.047 7.047 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.389 0.611 43 H 0.145 0.855 44 H 0.127 0.873 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -0.451 0.483 4.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.103 4.103 9 C 0.022 3.978 10 O -0.224 6.224 11 C 0.103 3.897 12 C -0.216 4.216 13 C -0.087 4.087 14 C -0.155 4.155 15 C -0.187 4.187 16 O -0.360 6.360 17 Si 0.806 3.194 18 H -0.170 1.170 19 H -0.202 1.202 20 H -0.176 1.176 21 C -0.049 4.049 22 C -0.224 4.224 23 Br 0.038 6.962 24 C -0.139 4.139 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.238 0.762 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.542 -0.066 0.697 4.596 hybrid contribution -0.158 -0.366 -0.035 0.400 sum -4.700 -0.432 0.662 4.766 Atomic orbital electron populations 1.26254 1.21273 1.04539 1.04632 0.77182 0.65370 0.64520 0.61611 1.26294 1.06292 1.19550 1.04896 1.26293 1.06292 1.08551 1.15887 1.28036 1.02412 0.99613 1.11121 1.21385 0.97427 0.95212 0.98220 1.21377 0.99053 1.00507 0.92906 1.19587 1.01380 0.94444 0.94840 1.21874 0.77312 1.01547 0.97096 1.86273 1.22452 1.72229 1.41429 1.18801 0.90744 0.92349 0.87846 1.21437 1.01525 1.03592 0.95076 1.21221 0.93936 0.96126 0.97387 1.20364 0.93645 1.02985 0.98467 1.25038 1.03038 0.92237 0.98350 1.86499 1.37960 1.34721 1.76846 0.85229 0.76333 0.80239 0.77618 1.17022 1.20180 1.17591 1.20921 1.00996 0.92593 0.90380 1.21293 0.91695 1.10276 0.99099 1.96730 1.68928 1.81453 1.49117 1.21377 0.99058 0.93788 0.99638 1.21385 0.97434 1.00719 0.92711 0.91309 0.90642 0.91299 0.91529 0.90622 0.90874 0.90866 0.90623 0.91526 0.84376 0.85445 0.89386 0.89359 0.82035 0.83485 0.85730 0.76158 0.83709 0.85474 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.75 8.65 113.37 0.98 2.74 16 2 Si 1.13 -6.04 12.32 68.60 0.85 -5.19 16 3 C -0.46 1.69 8.53 113.37 0.97 2.65 16 4 C -0.46 1.70 8.53 113.37 0.97 2.67 16 5 C -0.37 0.10 4.59 22.27 0.10 0.20 16 6 C -0.10 -0.09 9.29 22.27 0.21 0.11 16 7 C -0.12 -0.29 9.70 22.27 0.22 -0.07 16 8 C -0.10 -0.28 5.51 -19.87 -0.11 -0.39 16 9 C 0.10 -0.01 4.86 71.23 0.35 0.33 16 10 O -0.31 -1.64 9.46 -92.54 -0.88 -2.51 16 11 C 0.15 0.62 6.68 22.52 0.15 0.77 16 12 C -0.20 0.14 9.04 22.36 0.20 0.34 16 13 C -0.07 0.12 8.66 22.26 0.19 0.31 16 14 C -0.15 0.04 5.39 -19.85 -0.11 -0.07 16 15 C -0.08 0.18 2.82 71.23 0.20 0.39 16 16 O -0.55 0.32 12.77 -148.98 -1.90 -1.58 16 17 Si 0.98 -3.40 25.07 68.60 1.72 -1.69 16 18 H -0.25 1.01 7.11 99.48 0.71 1.72 16 19 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 20 H -0.25 0.79 7.11 99.48 0.71 1.49 16 21 C -0.03 -0.08 9.35 22.27 0.21 0.12 16 22 C -0.14 -0.81 6.24 22.40 0.14 -0.67 16 23 Br -0.05 -0.36 33.16 -20.37 -0.68 -1.03 16 24 C -0.12 -0.30 9.70 22.27 0.22 -0.08 16 25 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.30 7.69 -2.38 -0.02 -0.32 16 32 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 33 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 34 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 36 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.09 -0.30 7.59 -2.39 -0.02 -0.32 16 38 H 0.09 -0.31 7.62 -2.39 -0.02 -0.33 16 39 H 0.16 -0.95 6.30 -2.91 -0.02 -0.96 16 40 H 0.15 -0.86 4.87 -2.91 -0.01 -0.87 16 41 H 0.12 -0.46 7.96 -2.39 -0.02 -0.48 16 42 H 0.39 -2.70 8.70 -74.05 -0.64 -3.34 16 43 H 0.15 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 45 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 Total: 0.00 -13.66 394.12 5.31 -8.35 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: 1.11 Total: -5.81 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.09 Total: 9.46 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -2.78 Total: -4.09 kcal Atomic # 14 Polarization: -9.44 SS G_CDS: 2.56 Total: -6.88 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.68 Total: -1.03 kcal Total: -13.66 5.31 -8.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10154_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.036 kcal (2) G-P(sol) polarization free energy of solvation -13.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds