Wall clock time and date at job start Mon Mar 8 2021 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47213 * 120.00381 * 2 1 3 5 5 C 1.38703 * 119.66001 * 30.00424 * 4 2 1 6 6 O 1.35913 * 120.47012 * 359.97436 * 5 4 2 7 7 C 1.42901 * 116.99746 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46866 * 180.02562 * 8 7 6 10 10 O 1.42966 * 109.47092 * 299.99988 * 8 7 6 11 11 C 1.43091 * 113.77099 * 178.79420 * 10 8 7 12 12 C 1.53257 * 108.93993 * 302.03056 * 11 10 8 13 13 H 1.08993 * 109.57635 * 294.58404 * 12 11 10 14 14 N 1.46506 * 109.57044 * 174.33119 * 12 11 10 15 15 C 1.34523 * 124.45998 * 299.69417 * 14 12 11 16 16 O 1.21443 * 125.70886 * 0.04350 * 15 14 12 17 17 C 1.47820 * 108.57694 * 179.90946 * 15 14 12 18 18 C 1.40939 * 105.88178 * 0.34768 * 17 15 14 19 19 C 1.38565 * 119.82313 * 179.79742 * 18 17 15 20 20 C 1.38610 * 119.71671 * 359.97438 * 19 18 17 21 21 C 1.38228 * 120.46145 * 0.02562 * 20 19 18 22 22 C 1.38560 * 134.29580 * 180.10695 * 17 15 14 23 23 C 1.34524 * 124.45899 * 119.99981 * 14 12 11 24 24 O 1.21448 * 125.70952 * 359.96506 * 23 14 12 25 25 C 1.53256 * 108.84857 * 54.52556 * 12 11 10 26 26 O 1.42963 * 109.46956 * 59.99873 * 8 7 6 27 27 C 1.39131 * 119.05597 * 180.25251 * 5 4 2 28 28 C 1.38545 * 118.37174 * 359.43775 * 27 5 4 29 29 C 1.38251 * 119.21838 * 0.58050 * 28 27 5 30 30 N 1.31844 * 119.65521 * 209.97788 * 4 2 1 31 31 H 0.96695 * 113.99796 * 299.99516 * 1 2 3 32 32 H 1.09006 * 109.46811 * 240.00911 * 2 1 3 33 33 H 1.48501 * 110.00209 * 300.00790 * 3 2 1 34 34 H 1.48508 * 109.99541 * 61.31936 * 3 2 1 35 35 H 1.09001 * 109.47478 * 60.00475 * 7 6 5 36 36 H 1.08995 * 109.47418 * 300.00082 * 7 6 5 37 37 H 1.08999 * 109.55794 * 182.18890 * 11 10 8 38 38 H 1.09000 * 109.64171 * 61.92440 * 11 10 8 39 39 H 1.08004 * 120.14084 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.76793 * 179.97438 * 20 19 18 41 41 H 1.08004 * 119.77051 * 179.97438 * 21 20 19 42 42 H 1.08008 * 120.14628 * 0.24604 * 22 17 15 43 43 H 1.09001 * 109.56011 * 65.31038 * 25 12 11 44 44 H 1.08991 * 109.56380 * 185.63730 * 25 12 11 45 45 H 1.08001 * 120.81476 * 179.72180 * 27 5 4 46 46 H 1.07999 * 120.38826 * 180.30582 * 28 27 5 47 47 H 1.08002 * 119.55286 * 179.70452 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.1761 -1.7300 1.7907 6 8 -0.0121 -2.0911 1.2383 7 6 -0.7290 -3.1499 1.8762 8 6 -2.0312 -3.4137 1.1173 9 1 -2.5782 -4.2211 1.6042 10 8 -2.8312 -2.2289 1.1174 11 6 -4.0647 -2.3658 0.4052 12 6 -3.7615 -2.7681 -1.0422 13 1 -3.2311 -1.9582 -1.5428 14 7 -5.0154 -3.0437 -1.7479 15 6 -5.8971 -3.9947 -1.3901 16 8 -5.7819 -4.7487 -0.4451 17 6 -7.0311 -3.9661 -2.3379 18 6 -6.7353 -2.9443 -3.2625 19 6 -7.6193 -2.6713 -4.2940 20 6 -8.7888 -3.4064 -4.4093 21 6 -9.0789 -4.4085 -3.5026 22 6 -8.2043 -4.6923 -2.4653 23 6 -5.4340 -2.3831 -2.8425 24 8 -4.8416 -1.4772 -3.3934 25 6 -2.8895 -4.0284 -1.0335 26 8 -1.7306 -3.7858 -0.2299 27 6 1.6493 -2.3739 2.9297 28 6 2.8685 -1.9749 3.4528 29 6 3.5638 -0.9501 2.8382 30 7 3.0845 -0.3568 1.7628 31 1 -0.3933 0.4416 0.7651 32 1 1.7923 -0.5137 -0.8901 33 1 1.5614 2.4680 -1.2084 34 1 1.5878 2.4585 1.2243 35 1 -0.9579 -2.8665 2.9035 36 1 -0.1193 -4.0534 1.8758 37 1 -4.5995 -1.4161 0.4157 38 1 -4.6768 -3.1345 0.8771 39 1 -7.3980 -1.8892 -5.0052 40 1 -9.4786 -3.1940 -5.2128 41 1 -9.9936 -4.9740 -3.6027 42 1 -8.4360 -5.4767 -1.7599 43 1 -3.4555 -4.8609 -0.6156 44 1 -2.5837 -4.2676 -2.0519 45 1 1.0823 -3.1684 3.3919 46 1 3.2690 -2.4558 4.3331 47 1 4.5125 -0.6316 3.2443 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10177732_13594088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:47:24 Heat of formation + Delta-G solvation = -104.274333 kcal Electronic energy + Delta-G solvation = -37989.343560 eV Core-core repulsion = 32878.655552 eV Total energy + Delta-G solvation = -5110.688008 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.129 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.66543 -41.84232 -41.11977 -39.81126 -39.64851 -38.99949 -37.58097 -37.07788 -36.92866 -34.56967 -33.40134 -32.36705 -32.26213 -31.19721 -29.68558 -27.38152 -27.18318 -26.33745 -25.64289 -24.78822 -23.56336 -23.48252 -22.87254 -22.26441 -21.00251 -19.44153 -19.03003 -18.98941 -18.73945 -18.34016 -17.96044 -17.71435 -17.56062 -17.01670 -16.92198 -16.77703 -16.55189 -16.34856 -16.04723 -16.03498 -15.82175 -15.60814 -15.25654 -15.24122 -15.15518 -15.03950 -14.64189 -14.58068 -14.40640 -14.26441 -13.97828 -13.78346 -13.53728 -13.49492 -13.03707 -12.84083 -12.62615 -12.53203 -12.24371 -12.16572 -12.06315 -11.69265 -11.67337 -11.54318 -10.93860 -10.85292 -10.74147 -10.64811 -10.45361 -10.41825 -10.26737 -9.23356 -4.53945 -1.16176 -0.26068 0.06293 0.26278 0.81241 0.94088 1.57680 1.68642 1.92654 2.00558 2.19310 2.27613 2.34497 2.38006 2.39304 2.77268 3.07357 3.23795 3.24614 3.33997 3.36615 3.43400 3.50371 3.68828 3.72064 3.77278 3.84542 3.85987 3.87474 3.96328 4.02597 4.03685 4.05663 4.12666 4.14489 4.17392 4.30586 4.36475 4.51401 4.51757 4.54093 4.63812 4.71417 4.81344 4.89099 4.98979 5.00389 5.06164 5.33883 5.39542 5.43499 5.54880 5.83740 5.98991 6.22808 6.43682 6.64359 6.97910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.507 6.507 2 C -0.062 4.062 3 Si 0.719 3.281 4 C 0.068 3.932 5 C 0.098 3.902 6 O -0.261 6.261 7 C 0.070 3.930 8 C 0.249 3.751 9 H 0.083 0.917 10 O -0.367 6.367 11 C 0.050 3.950 12 C 0.075 3.925 13 H 0.132 0.868 14 N -0.570 5.570 15 C 0.576 3.424 16 O -0.461 6.461 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.042 4.042 20 C -0.092 4.092 21 C -0.094 4.094 22 C -0.042 4.042 23 C 0.575 3.425 24 O -0.451 6.451 25 C 0.049 3.951 26 O -0.366 6.366 27 C -0.171 4.171 28 C -0.129 4.129 29 C 0.065 3.935 30 N -0.435 5.435 31 H 0.371 0.629 32 H 0.123 0.877 33 H -0.262 1.262 34 H -0.269 1.269 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -4.175 0.914 5.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.311 6.311 2 C -0.172 4.172 3 Si 0.619 3.381 4 C -0.071 4.071 5 C 0.049 3.951 6 O -0.172 6.172 7 C -0.006 4.006 8 C 0.153 3.847 9 H 0.101 0.899 10 O -0.286 6.286 11 C -0.028 4.028 12 C -0.026 4.026 13 H 0.150 0.850 14 N -0.315 5.315 15 C 0.366 3.634 16 O -0.332 6.332 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.061 4.061 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.060 4.060 23 C 0.364 3.636 24 O -0.320 6.320 25 C -0.028 4.028 26 O -0.285 6.285 27 C -0.198 4.198 28 C -0.148 4.148 29 C -0.092 4.092 30 N -0.147 5.147 31 H 0.218 0.782 32 H 0.140 0.860 33 H -0.187 1.187 34 H -0.193 1.193 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.935 -2.652 0.103 3.957 hybrid contribution -1.801 -1.465 1.264 2.643 sum -4.736 -4.117 1.368 6.422 Atomic orbital electron populations 1.86701 1.16179 1.79945 1.48289 1.24873 0.84684 1.11366 0.96261 0.93960 0.91926 0.72857 0.79312 1.21338 0.91553 0.95237 0.99003 1.19865 0.87453 0.94787 0.92949 1.86500 1.28963 1.50602 1.51097 1.22908 0.90392 0.91222 0.96110 1.23527 0.90327 0.86681 0.84126 0.89949 1.88249 1.30984 1.36690 1.72656 1.22985 0.86713 1.04019 0.89047 1.22658 0.83175 1.01748 0.95062 0.85043 1.46468 1.21505 1.34713 1.28861 1.18455 0.82397 0.78859 0.83729 1.90807 1.76772 1.38224 1.27385 1.20469 0.96825 0.99794 0.97574 1.20480 0.96027 0.99079 0.98713 1.20874 0.91768 0.98269 0.95194 1.21561 0.96156 0.94335 0.98962 1.21554 0.99428 0.96891 0.93318 1.20853 0.90631 0.97335 0.97230 1.18420 0.85127 0.81084 0.78977 1.90867 1.60387 1.25609 1.55161 1.23002 0.87063 0.95035 0.97738 1.88271 1.30032 1.87756 1.22479 1.21777 0.98593 1.02429 0.96956 1.22035 0.94478 0.97517 1.00808 1.22653 1.00468 0.94047 0.92034 1.66973 1.10582 1.26804 1.10326 0.78245 0.85966 1.18725 1.19345 0.89498 0.89479 0.87361 0.90942 0.83746 0.83694 0.83715 0.83820 0.90842 0.87343 0.84261 0.84195 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -2.15 10.63 -58.09 -0.62 -2.77 16 2 C -0.06 -0.19 2.92 36.00 0.11 -0.08 16 3 Si 0.72 1.73 31.89 -169.99 -5.42 -3.69 16 4 C 0.07 0.21 6.08 -82.42 -0.50 -0.29 16 5 C 0.10 0.25 6.56 -39.08 -0.26 -0.01 16 6 O -0.26 -0.79 7.66 -50.29 -0.39 -1.17 16 7 C 0.07 0.01 4.85 37.16 0.18 0.19 16 8 C 0.25 0.30 3.59 37.16 0.13 0.44 16 9 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 10 O -0.37 -0.91 10.43 -63.56 -0.66 -1.57 16 11 C 0.05 0.07 6.33 37.29 0.24 0.30 16 12 C 0.08 0.14 3.08 -67.66 -0.21 -0.07 16 13 H 0.13 0.42 7.59 -51.93 -0.39 0.02 16 14 N -0.57 -0.90 2.53 -110.22 -0.28 -1.18 16 15 C 0.58 0.86 7.35 -12.45 -0.09 0.77 16 16 O -0.46 -1.39 15.16 5.42 0.08 -1.31 16 17 C -0.14 -0.01 6.40 -104.84 -0.67 -0.68 16 18 C -0.14 -0.05 6.40 -104.84 -0.67 -0.72 16 19 C -0.04 0.07 10.09 -39.32 -0.40 -0.32 16 20 C -0.09 0.33 10.04 -39.45 -0.40 -0.07 16 21 C -0.09 0.34 10.04 -39.45 -0.40 -0.05 16 22 C -0.04 0.09 10.09 -39.32 -0.40 -0.31 16 23 C 0.57 1.34 8.02 -12.46 -0.10 1.24 16 24 O -0.45 -2.29 17.44 5.41 0.09 -2.19 16 25 C 0.05 0.08 6.32 37.29 0.24 0.31 16 26 O -0.37 -1.07 10.43 -63.56 -0.66 -1.74 16 27 C -0.17 -0.06 9.14 -39.14 -0.36 -0.42 16 28 C -0.13 0.06 10.11 -39.46 -0.40 -0.34 16 29 C 0.06 0.03 11.18 -17.54 -0.20 -0.16 16 30 N -0.44 -1.12 8.37 -9.35 -0.08 -1.20 16 31 H 0.37 0.84 8.70 45.56 0.40 1.24 16 32 H 0.12 0.32 7.96 -51.93 -0.41 -0.10 16 33 H -0.26 -1.28 7.11 56.52 0.40 -0.88 16 34 H -0.27 -1.31 7.11 56.52 0.40 -0.91 16 35 H 0.09 -0.15 7.69 -51.93 -0.40 -0.55 16 36 H 0.09 -0.13 7.71 -51.93 -0.40 -0.53 16 37 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.07 0.09 6.71 -51.93 -0.35 -0.26 16 39 H 0.14 -0.42 8.06 -52.48 -0.42 -0.85 16 40 H 0.15 -0.86 8.06 -52.48 -0.42 -1.29 16 41 H 0.15 -0.88 8.06 -52.48 -0.42 -1.30 16 42 H 0.14 -0.50 8.06 -52.48 -0.42 -0.92 16 43 H 0.07 0.10 6.63 -51.93 -0.34 -0.24 16 44 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.14 -0.29 6.45 -52.49 -0.34 -0.63 16 46 H 0.14 -0.43 8.06 -52.49 -0.42 -0.86 16 47 H 0.16 -0.37 8.06 -52.49 -0.42 -0.79 16 LS Contribution 399.57 15.07 6.02 6.02 Total: 0.00 -9.77 399.57 -11.30 -21.07 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: -5.24 Total: -10.01 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.15 Total: -0.26 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -0.36 Total: -2.38 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -2.15 Total: -10.75 kcal Atomic # 14 Polarization: 1.73 SS G_CDS: -5.42 Total: -3.69 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -9.77 -11.30 -21.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_13594088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.208 kcal (2) G-P(sol) polarization free energy of solvation -9.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds