Wall clock time and date at job start Mon Mar 8 2021 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47213 * 120.00381 * 2 1 3 5 5 C 1.38703 * 119.66001 * 30.00424 * 4 2 1 6 6 O 1.35913 * 120.47012 * 359.97436 * 5 4 2 7 7 C 1.42901 * 116.99746 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46866 * 180.02562 * 8 7 6 10 10 O 1.42966 * 109.47092 * 299.99988 * 8 7 6 11 11 C 1.43091 * 113.77099 * 178.79420 * 10 8 7 12 12 C 1.53257 * 108.93993 * 302.03056 * 11 10 8 13 13 H 1.08993 * 109.57635 * 294.58404 * 12 11 10 14 14 N 1.46506 * 109.57044 * 174.33119 * 12 11 10 15 15 C 1.34523 * 124.45998 * 299.69417 * 14 12 11 16 16 O 1.21443 * 125.70886 * 0.04350 * 15 14 12 17 17 C 1.47820 * 108.57694 * 179.90946 * 15 14 12 18 18 C 1.40939 * 105.88178 * 0.34768 * 17 15 14 19 19 C 1.38565 * 119.82313 * 179.79742 * 18 17 15 20 20 C 1.38610 * 119.71671 * 359.97438 * 19 18 17 21 21 C 1.38228 * 120.46145 * 0.02562 * 20 19 18 22 22 C 1.38560 * 134.29580 * 180.10695 * 17 15 14 23 23 C 1.34524 * 124.45899 * 119.99981 * 14 12 11 24 24 O 1.21448 * 125.70952 * 359.96506 * 23 14 12 25 25 C 1.53256 * 108.84857 * 54.52556 * 12 11 10 26 26 O 1.42963 * 109.46956 * 59.99873 * 8 7 6 27 27 C 1.39131 * 119.05597 * 180.25251 * 5 4 2 28 28 C 1.38545 * 118.37174 * 359.43775 * 27 5 4 29 29 C 1.38251 * 119.21838 * 0.58050 * 28 27 5 30 30 N 1.31844 * 119.65521 * 209.97788 * 4 2 1 31 31 H 0.96695 * 113.99796 * 299.99516 * 1 2 3 32 32 H 1.09006 * 109.46811 * 240.00911 * 2 1 3 33 33 H 1.48501 * 110.00209 * 300.00790 * 3 2 1 34 34 H 1.48508 * 109.99541 * 61.31936 * 3 2 1 35 35 H 1.09001 * 109.47478 * 60.00475 * 7 6 5 36 36 H 1.08995 * 109.47418 * 300.00082 * 7 6 5 37 37 H 1.08999 * 109.55794 * 182.18890 * 11 10 8 38 38 H 1.09000 * 109.64171 * 61.92440 * 11 10 8 39 39 H 1.08004 * 120.14084 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.76793 * 179.97438 * 20 19 18 41 41 H 1.08004 * 119.77051 * 179.97438 * 21 20 19 42 42 H 1.08008 * 120.14628 * 0.24604 * 22 17 15 43 43 H 1.09001 * 109.56011 * 65.31038 * 25 12 11 44 44 H 1.08991 * 109.56380 * 185.63730 * 25 12 11 45 45 H 1.08001 * 120.81476 * 179.72180 * 27 5 4 46 46 H 1.07999 * 120.38826 * 180.30582 * 28 27 5 47 47 H 1.08002 * 119.55286 * 179.70452 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.1761 -1.7300 1.7907 6 8 -0.0121 -2.0911 1.2383 7 6 -0.7290 -3.1499 1.8762 8 6 -2.0312 -3.4137 1.1173 9 1 -2.5782 -4.2211 1.6042 10 8 -2.8312 -2.2289 1.1174 11 6 -4.0647 -2.3658 0.4052 12 6 -3.7615 -2.7681 -1.0422 13 1 -3.2311 -1.9582 -1.5428 14 7 -5.0154 -3.0437 -1.7479 15 6 -5.8971 -3.9947 -1.3901 16 8 -5.7819 -4.7487 -0.4451 17 6 -7.0311 -3.9661 -2.3379 18 6 -6.7353 -2.9443 -3.2625 19 6 -7.6193 -2.6713 -4.2940 20 6 -8.7888 -3.4064 -4.4093 21 6 -9.0789 -4.4085 -3.5026 22 6 -8.2043 -4.6923 -2.4653 23 6 -5.4340 -2.3831 -2.8425 24 8 -4.8416 -1.4772 -3.3934 25 6 -2.8895 -4.0284 -1.0335 26 8 -1.7306 -3.7858 -0.2299 27 6 1.6493 -2.3739 2.9297 28 6 2.8685 -1.9749 3.4528 29 6 3.5638 -0.9501 2.8382 30 7 3.0845 -0.3568 1.7628 31 1 -0.3933 0.4416 0.7651 32 1 1.7923 -0.5137 -0.8901 33 1 1.5614 2.4680 -1.2084 34 1 1.5878 2.4585 1.2243 35 1 -0.9579 -2.8665 2.9035 36 1 -0.1193 -4.0534 1.8758 37 1 -4.5995 -1.4161 0.4157 38 1 -4.6768 -3.1345 0.8771 39 1 -7.3980 -1.8892 -5.0052 40 1 -9.4786 -3.1940 -5.2128 41 1 -9.9936 -4.9740 -3.6027 42 1 -8.4360 -5.4767 -1.7599 43 1 -3.4555 -4.8609 -0.6156 44 1 -2.5837 -4.2676 -2.0519 45 1 1.0823 -3.1684 3.3919 46 1 3.2690 -2.4558 4.3331 47 1 4.5125 -0.6316 3.2443 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_13594088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:47:23 Heat of formation + Delta-G solvation = -103.290079 kcal Electronic energy + Delta-G solvation = -37989.300880 eV Core-core repulsion = 32878.655552 eV Total energy + Delta-G solvation = -5110.645328 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.129 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.74795 -41.89997 -41.21547 -39.99902 -39.56866 -39.06278 -37.83792 -37.25302 -37.09352 -34.59904 -33.44104 -32.28109 -32.19655 -31.22342 -29.72356 -27.53002 -27.31840 -26.39095 -25.64145 -24.79484 -23.55645 -23.49748 -22.94598 -22.30260 -21.04967 -19.49947 -19.15869 -19.01222 -18.86711 -18.44715 -18.06258 -17.69995 -17.69051 -17.10276 -17.01201 -16.88276 -16.63301 -16.43792 -16.19616 -15.99329 -15.93083 -15.52362 -15.37282 -15.31239 -15.13874 -15.09657 -14.80220 -14.70016 -14.49646 -14.35752 -14.03021 -13.83942 -13.57859 -13.31933 -13.13589 -12.73277 -12.71184 -12.61437 -12.45606 -12.29831 -12.21146 -11.98719 -11.73958 -11.67050 -11.04120 -10.98481 -10.89019 -10.69134 -10.42914 -10.29274 -10.27904 -9.31206 -4.79564 -1.15283 -0.09385 0.02199 0.23456 0.83957 0.84897 1.34628 1.57638 1.64769 1.89572 1.97816 2.17683 2.28022 2.41115 2.53915 2.72427 3.03169 3.12309 3.16427 3.19400 3.28687 3.44001 3.50389 3.63984 3.71252 3.78287 3.87914 3.92238 3.99817 4.00986 4.06477 4.10019 4.11640 4.13893 4.17747 4.22293 4.30743 4.37969 4.41808 4.47974 4.51677 4.65779 4.77313 4.84622 5.00188 5.08647 5.15248 5.21968 5.30817 5.37910 5.50479 5.62374 5.72213 5.88075 6.20801 6.30300 6.43655 6.91390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.068 4.068 3 Si 0.792 3.208 4 C 0.043 3.957 5 C 0.082 3.918 6 O -0.284 6.284 7 C 0.065 3.935 8 C 0.240 3.760 9 H 0.105 0.895 10 O -0.381 6.381 11 C 0.055 3.945 12 C 0.077 3.923 13 H 0.110 0.890 14 N -0.570 5.570 15 C 0.577 3.423 16 O -0.480 6.480 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.041 4.041 23 C 0.574 3.426 24 O -0.491 6.491 25 C 0.054 3.946 26 O -0.384 6.384 27 C -0.171 4.171 28 C -0.122 4.122 29 C 0.056 3.944 30 N -0.453 5.453 31 H 0.376 0.624 32 H 0.120 0.880 33 H -0.298 1.298 34 H -0.301 1.301 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.165 0.835 46 H 0.172 0.828 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -5.936 1.707 8.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.178 4.178 3 Si 0.697 3.303 4 C -0.095 4.095 5 C 0.034 3.966 6 O -0.196 6.196 7 C -0.011 4.011 8 C 0.145 3.855 9 H 0.122 0.878 10 O -0.300 6.300 11 C -0.023 4.023 12 C -0.025 4.025 13 H 0.128 0.872 14 N -0.314 5.314 15 C 0.368 3.632 16 O -0.353 6.353 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.060 4.060 23 C 0.365 3.635 24 O -0.364 6.364 25 C -0.024 4.024 26 O -0.304 6.304 27 C -0.198 4.198 28 C -0.141 4.141 29 C -0.101 4.101 30 N -0.165 5.165 31 H 0.223 0.777 32 H 0.138 0.862 33 H -0.227 1.227 34 H -0.228 1.228 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.194 0.806 41 H 0.196 0.804 42 H 0.176 0.824 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.182 0.818 46 H 0.190 0.810 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.134 -4.442 0.900 6.134 hybrid contribution -1.505 -0.959 1.038 2.064 sum -5.638 -5.401 1.938 8.045 Atomic orbital electron populations 1.86670 1.17154 1.80238 1.48790 1.24980 0.84032 1.11916 0.96837 0.93181 0.90748 0.70972 0.75381 1.21252 0.92437 0.96344 0.99447 1.20000 0.87497 0.95229 0.93911 1.86461 1.29444 1.51578 1.52106 1.23156 0.89880 0.91399 0.96642 1.23905 0.91127 0.86846 0.83596 0.87832 1.88227 1.31336 1.37768 1.72694 1.22950 0.86570 1.04158 0.88591 1.22544 0.83442 1.01279 0.95209 0.87161 1.46491 1.21412 1.34793 1.28728 1.18728 0.82644 0.78181 0.83630 1.90782 1.77291 1.38907 1.28288 1.20449 0.97435 1.00937 0.97430 1.20422 0.95586 0.99996 1.00334 1.21164 0.92040 0.98649 0.94547 1.21961 0.95428 0.93287 0.99409 1.21983 0.99804 0.96367 0.91905 1.21178 0.89824 0.97058 0.97912 1.18856 0.85728 0.80348 0.78588 1.90832 1.61711 1.27453 1.56391 1.22965 0.86805 0.94837 0.97750 1.88243 1.30718 1.87856 1.23562 1.22124 0.99053 1.02528 0.96050 1.22426 0.93773 0.96706 1.01229 1.23214 1.01429 0.94081 0.91364 1.66912 1.10534 1.27633 1.11391 0.77679 0.86237 1.22693 1.22797 0.87480 0.87761 0.87245 0.90576 0.83039 0.80609 0.80445 0.82448 0.90463 0.87376 0.81805 0.81021 0.79341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -5.95 10.63 -127.13 -1.35 -7.30 16 2 C -0.07 -0.57 2.92 71.23 0.21 -0.36 16 3 Si 0.79 5.52 31.89 68.60 2.19 7.71 16 4 C 0.04 0.33 6.08 42.67 0.26 0.59 16 5 C 0.08 0.47 6.56 22.60 0.15 0.62 16 6 O -0.28 -2.07 7.66 -63.10 -0.48 -2.56 16 7 C 0.06 0.03 4.85 71.98 0.35 0.38 16 8 C 0.24 0.81 3.59 71.98 0.26 1.07 16 9 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 10 O -0.38 -2.55 10.43 -121.89 -1.27 -3.82 16 11 C 0.05 0.27 6.33 72.07 0.46 0.72 16 12 C 0.08 0.50 3.08 45.16 0.14 0.64 16 13 H 0.11 1.16 7.59 -2.39 -0.02 1.14 16 14 N -0.57 -3.24 2.53 -739.56 -1.87 -5.11 16 15 C 0.58 2.63 7.35 86.82 0.64 3.27 16 16 O -0.48 -3.49 15.16 -3.54 -0.05 -3.54 16 17 C -0.16 -0.10 6.40 -20.00 -0.13 -0.23 16 18 C -0.16 -0.29 6.40 -20.00 -0.13 -0.41 16 19 C -0.05 0.17 10.09 22.44 0.23 0.40 16 20 C -0.08 0.78 10.04 22.36 0.22 1.01 16 21 C -0.08 0.83 10.04 22.36 0.22 1.05 16 22 C -0.04 0.22 10.09 22.44 0.23 0.45 16 23 C 0.57 4.23 8.02 86.82 0.70 4.93 16 24 O -0.49 -6.69 17.44 -3.55 -0.06 -6.75 16 25 C 0.05 0.29 6.32 72.07 0.46 0.74 16 26 O -0.38 -2.94 10.43 -121.89 -1.27 -4.21 16 27 C -0.17 0.06 9.14 22.56 0.21 0.26 16 28 C -0.12 0.33 10.11 22.35 0.23 0.55 16 29 C 0.06 0.00 11.18 84.69 0.95 0.95 16 30 N -0.45 -2.54 8.37 -183.51 -1.54 -4.08 16 31 H 0.38 2.85 8.70 -74.06 -0.64 2.20 16 32 H 0.12 0.94 7.96 -2.38 -0.02 0.92 16 33 H -0.30 -3.78 7.11 99.48 0.71 -3.07 16 34 H -0.30 -3.65 7.11 99.48 0.71 -2.94 16 35 H 0.11 -0.45 7.69 -2.39 -0.02 -0.47 16 36 H 0.10 -0.37 7.71 -2.39 -0.02 -0.39 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 0.30 6.71 -2.39 -0.02 0.29 16 39 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 40 H 0.18 -2.73 8.06 -2.91 -0.02 -2.75 16 41 H 0.18 -2.90 8.06 -2.91 -0.02 -2.92 16 42 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 43 H 0.08 0.34 6.63 -2.39 -0.02 0.32 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.16 -1.01 6.45 -2.91 -0.02 -1.03 16 46 H 0.17 -1.61 8.06 -2.91 -0.02 -1.63 16 47 H 0.19 -1.16 8.06 -2.91 -0.02 -1.18 16 Total: 0.00 -26.44 399.57 0.36 -26.07 By element: Atomic # 1 Polarization: -13.48 SS G_CDS: 0.45 Total: -13.03 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.63 Total: 16.62 kcal Atomic # 7 Polarization: -5.78 SS G_CDS: -3.41 Total: -9.19 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -4.49 Total: -28.18 kcal Atomic # 14 Polarization: 5.52 SS G_CDS: 2.19 Total: 7.71 kcal Total: -26.44 0.36 -26.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_13594088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.218 kcal (2) G-P(sol) polarization free energy of solvation -26.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds