Wall clock time and date at job start Mon Mar 8 2021 12:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47296 * 239.99834 * 2 1 3 5 5 O 1.42897 * 109.46917 * 119.99566 * 2 1 3 6 6 C 1.42902 * 114.00175 * 60.00569 * 5 2 1 7 7 H 1.08997 * 112.84985 * 18.79740 * 6 5 2 8 8 C 1.53774 * 113.61646 * 149.99836 * 6 5 2 9 9 C 1.53784 * 87.08403 * 139.98106 * 8 6 5 10 10 H 1.08995 * 113.61235 * 89.20000 * 9 8 6 11 11 C 1.52999 * 113.61241 * 220.02098 * 9 8 6 12 12 O 1.42905 * 109.46728 * 184.99897 * 11 9 8 13 13 C 1.35905 * 116.99842 * 179.97438 * 12 11 9 14 14 C 1.38705 * 120.47482 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.65556 * 0.02668 * 14 13 12 16 16 O 1.42894 * 109.47267 * 29.99409 * 15 14 13 17 17 Si 1.86302 * 109.47205 * 149.99915 * 15 14 13 18 18 N 1.31846 * 120.68718 * 179.97438 * 14 13 12 19 19 C 1.31848 * 121.77881 * 0.02562 * 18 14 13 20 20 C 1.38251 * 120.88338 * 0.02562 * 19 18 14 21 21 C 1.38536 * 119.22670 * 359.68691 * 20 19 18 22 22 C 1.53778 * 87.07717 * 334.56680 * 9 8 6 23 23 H 1.08994 * 109.47737 * 299.99816 * 1 2 3 24 24 H 1.09001 * 109.47237 * 60.00370 * 1 2 3 25 25 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47206 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46892 * 299.99841 * 3 2 1 28 28 H 1.08999 * 109.47495 * 59.99522 * 3 2 1 29 29 H 1.09004 * 109.47222 * 299.99687 * 4 2 1 30 30 H 1.09001 * 109.47144 * 59.99739 * 4 2 1 31 31 H 1.08998 * 109.47189 * 179.97438 * 4 2 1 32 32 H 1.08999 * 113.61743 * 25.42987 * 8 6 5 33 33 H 1.09004 * 113.68986 * 254.53691 * 8 6 5 34 34 H 1.09000 * 109.47486 * 64.99835 * 11 9 8 35 35 H 1.09001 * 109.47362 * 304.99112 * 11 9 8 36 36 H 1.09000 * 109.46736 * 269.99411 * 15 14 13 37 37 H 0.96705 * 113.99894 * 60.00604 * 16 15 14 38 38 H 1.48499 * 110.00012 * 58.67793 * 17 15 14 39 39 H 1.48499 * 110.00031 * 179.97438 * 17 15 14 40 40 H 1.07995 * 119.55374 * 179.97438 * 19 18 14 41 41 H 1.08004 * 120.38404 * 179.97438 * 20 19 18 42 42 H 1.07994 * 120.81481 * 180.29675 * 21 20 19 43 43 H 1.09003 * 113.61683 * 139.98396 * 22 9 8 44 44 H 1.09008 * 113.61715 * 270.88359 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.5847 -2.0355 1.2646 7 1 1.2523 -2.4452 0.3108 8 6 2.5837 -2.9377 2.0080 9 6 1.3667 -3.6119 2.6633 10 1 0.9746 -4.4541 2.0933 11 6 1.5712 -3.9400 4.1437 12 8 0.4399 -4.6639 4.6317 13 6 0.4622 -5.0355 5.9388 14 6 -0.5986 -5.7404 6.4880 15 6 -1.7830 -6.0961 5.6267 16 8 -1.3551 -6.2628 4.2736 17 14 -2.5412 -7.6841 6.2385 18 7 -0.5811 -6.1035 7.7553 19 6 0.4336 -5.8150 8.5463 20 6 1.5266 -5.1141 8.0715 21 6 1.5518 -4.7185 6.7440 22 6 0.6077 -2.2962 2.4232 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 1.6768 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 3.2171 -2.3996 2.7132 33 1 3.1486 -3.5996 1.3515 34 1 1.6821 -3.0147 4.7090 35 1 2.4690 -4.5471 4.2606 36 1 -2.5226 -5.2970 5.6781 37 1 -0.6951 -6.9593 4.1527 38 1 -2.9615 -7.5337 7.6548 39 1 -3.7107 -8.0455 5.3978 40 1 0.4101 -6.1297 9.5791 41 1 2.3532 -4.8817 8.7266 42 1 2.3948 -4.1741 6.3449 43 1 -0.4237 -2.4397 2.1007 44 1 0.7008 -1.5826 3.2419 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_14598384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:22:05 Heat of formation + Delta-G solvation = -49.850676 kcal Electronic energy + Delta-G solvation = -24193.930944 eV Core-core repulsion = 20693.583155 eV Total energy + Delta-G solvation = -3500.347789 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85980 -40.90257 -39.31999 -38.03478 -37.65913 -33.92772 -33.43894 -31.86667 -29.43258 -28.37177 -28.28804 -27.31012 -26.61378 -24.72240 -23.45147 -22.84409 -20.83749 -20.61030 -19.20077 -18.42711 -17.92596 -17.63232 -17.09396 -16.80614 -16.55609 -16.06884 -15.99429 -15.63761 -15.32581 -14.99131 -14.62363 -14.59093 -14.22333 -14.13396 -14.03628 -13.48023 -13.40989 -13.32551 -13.08140 -12.95382 -12.78045 -12.66184 -12.64398 -12.35238 -12.21831 -12.01545 -11.89235 -11.68655 -11.36643 -11.18709 -11.01485 -10.66940 -10.36801 -10.25188 -9.29763 -4.95526 0.01716 0.23062 1.37242 1.75022 2.03423 2.08657 2.71518 2.74745 3.16425 3.39558 3.48116 3.57607 3.75517 3.77224 3.82447 3.88246 3.90126 3.97540 4.06158 4.08950 4.14446 4.25875 4.29958 4.40767 4.45971 4.54188 4.60398 4.63118 4.66655 4.76579 4.77606 4.79174 4.84437 4.90293 4.92648 5.00671 5.02704 5.08391 5.11688 5.17425 5.30469 5.31853 5.37852 5.48913 6.27319 6.40974 6.70890 6.93573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.099 0.901 8 C -0.120 4.120 9 C -0.097 4.097 10 H 0.109 0.891 11 C 0.064 3.936 12 O -0.291 6.291 13 C 0.093 3.907 14 C 0.043 3.957 15 C -0.054 4.054 16 O -0.534 6.534 17 Si 0.797 3.203 18 N -0.470 5.470 19 C 0.053 3.947 20 C -0.122 4.122 21 C -0.171 4.171 22 C -0.150 4.150 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.388 0.612 38 H -0.292 1.292 39 H -0.297 1.297 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.065 0.935 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -0.621 -1.617 5.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.300 6.300 6 C 0.001 3.999 7 H 0.117 0.883 8 C -0.157 4.157 9 C -0.115 4.115 10 H 0.127 0.873 11 C -0.011 4.011 12 O -0.203 6.203 13 C 0.044 3.956 14 C -0.095 4.095 15 C -0.165 4.165 16 O -0.339 6.339 17 Si 0.702 3.298 18 N -0.182 5.182 19 C -0.104 4.104 20 C -0.141 4.141 21 C -0.197 4.197 22 C -0.188 4.188 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.237 0.763 38 H -0.219 1.219 39 H -0.225 1.225 40 H 0.198 0.802 41 H 0.186 0.814 42 H 0.177 0.823 43 H 0.083 0.917 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.578 -0.898 -1.124 3.856 hybrid contribution 0.563 1.322 -0.131 1.443 sum 4.141 0.424 -1.255 4.348 Atomic orbital electron populations 1.22450 0.95293 1.02570 1.02870 1.21660 0.93439 0.93452 0.85460 1.21793 1.01770 0.93214 1.02883 1.22445 1.02043 1.01103 0.97789 1.88005 1.74167 1.24184 1.43690 1.23684 0.95969 0.82381 0.97864 0.88334 1.23192 0.96118 0.97061 0.99377 1.22212 0.98052 0.97524 0.93758 0.87318 1.22997 0.87940 0.95661 0.94529 1.86335 1.43297 1.69651 1.20987 1.19894 0.95043 0.95326 0.85350 1.21354 0.96405 0.99950 0.91808 1.24886 0.96091 1.10848 0.84688 1.86505 1.63428 1.61343 1.22608 0.93279 0.80436 0.80501 0.75583 1.67203 1.27944 1.19533 1.03471 1.23065 0.89313 0.97467 1.00596 1.22374 1.00066 0.96186 0.95471 1.22098 0.98955 1.03384 0.95297 1.23574 0.99000 0.96872 0.99309 0.92667 0.90585 0.92243 0.92089 0.89805 0.92524 0.91830 0.90496 0.91956 0.89113 0.89180 0.91886 0.90072 0.87785 0.76284 1.21941 1.22511 0.80227 0.81412 0.82260 0.91671 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.01 8.38 71.98 0.60 0.62 16 2 C 0.10 0.07 1.11 -10.80 -0.01 0.06 16 3 C -0.14 0.01 8.84 71.98 0.64 0.65 16 4 C -0.18 0.29 8.38 71.98 0.60 0.89 16 5 O -0.38 -1.44 10.00 -148.98 -1.49 -2.93 16 6 C 0.06 0.00 2.82 31.12 0.09 0.09 16 7 H 0.10 -0.16 5.54 -2.39 -0.01 -0.18 16 8 C -0.12 0.35 7.47 31.12 0.23 0.58 16 9 C -0.10 0.21 4.01 -10.27 -0.04 0.17 16 10 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C 0.06 -0.14 4.60 71.98 0.33 0.20 16 12 O -0.29 -0.83 7.87 -70.63 -0.56 -1.38 16 13 C 0.09 0.30 6.56 22.60 0.15 0.45 16 14 C 0.04 0.24 6.09 42.67 0.26 0.50 16 15 C -0.05 -0.27 2.92 71.24 0.21 -0.06 16 16 O -0.53 -1.93 10.63 -127.13 -1.35 -3.29 16 17 Si 0.80 2.99 31.89 68.60 2.19 5.18 16 18 N -0.47 -2.84 8.37 -183.50 -1.54 -4.38 16 19 C 0.05 0.04 11.18 84.69 0.95 0.99 16 20 C -0.12 0.29 10.11 22.34 0.23 0.52 16 21 C -0.17 0.14 9.14 22.56 0.21 0.35 16 22 C -0.15 -0.13 7.46 31.12 0.23 0.10 16 23 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.06 -0.01 7.02 -2.38 -0.02 -0.03 16 26 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.06 -0.16 6.24 -2.38 -0.01 -0.17 16 30 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 33 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 34 H 0.06 -0.14 7.41 -2.39 -0.02 -0.16 16 35 H 0.08 -0.45 7.68 -2.39 -0.02 -0.46 16 36 H 0.10 0.72 7.96 -2.39 -0.02 0.70 16 37 H 0.39 -1.37 8.70 -74.05 -0.64 -2.01 16 38 H -0.29 -3.15 7.11 99.48 0.71 -2.44 16 39 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 40 H 0.18 -0.76 8.06 -2.91 -0.02 -0.79 16 41 H 0.17 -1.44 8.06 -2.91 -0.02 -1.46 16 42 H 0.16 -0.86 6.45 -2.91 -0.02 -0.88 16 43 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.08 0.24 7.90 -2.38 -0.02 0.22 16 Total: 0.00 -14.16 352.59 2.29 -11.87 By element: Atomic # 1 Polarization: -11.54 SS G_CDS: 0.37 Total: -11.17 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.67 Total: 6.10 kcal Atomic # 7 Polarization: -2.84 SS G_CDS: -1.54 Total: -4.38 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -3.40 Total: -7.60 kcal Atomic # 14 Polarization: 2.99 SS G_CDS: 2.19 Total: 5.18 kcal Total: -14.16 2.29 -11.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_14598384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.983 kcal (2) G-P(sol) polarization free energy of solvation -14.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds