Wall clock time and date at job start Mon Mar 8 2021 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47035 * 2 1 4 4 C 1.52993 * 109.47312 * 240.00053 * 2 1 3 5 5 O 1.45200 * 109.47032 * 119.99743 * 2 1 3 6 6 C 1.34633 * 117.00039 * 60.00357 * 5 2 1 7 7 O 1.21512 * 119.99772 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00371 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00122 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.90929 * 336.25213 * 9 8 6 11 11 C 1.53962 * 113.66387 * 107.55425 * 9 8 6 12 12 C 1.53782 * 87.11063 * 139.88885 * 11 9 8 13 13 H 1.08996 * 113.68722 * 89.19879 * 12 11 9 14 14 C 1.53003 * 113.61259 * 220.08801 * 12 11 9 15 15 O 1.42901 * 109.47045 * 272.50005 * 14 12 11 16 16 C 1.35911 * 116.99864 * 180.02562 * 15 14 12 17 17 C 1.38703 * 120.47141 * 179.72207 * 16 15 14 18 18 C 1.50701 * 119.65956 * 359.97438 * 17 16 15 19 19 O 1.42897 * 109.46709 * 329.99817 * 18 17 16 20 20 Si 1.86302 * 109.47021 * 209.99913 * 18 17 16 21 21 N 1.31851 * 120.67879 * 179.69788 * 17 16 15 22 22 C 1.31844 * 121.78241 * 0.59055 * 21 17 16 23 23 C 1.38260 * 120.88407 * 359.69847 * 22 21 17 24 24 C 1.38533 * 119.22188 * 0.02562 * 23 22 21 25 25 C 1.53781 * 87.08260 * 334.63747 * 12 11 9 26 26 H 1.09004 * 109.47089 * 300.00250 * 1 2 3 27 27 H 1.08995 * 109.47372 * 59.99926 * 1 2 3 28 28 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47473 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47329 * 300.00375 * 3 2 1 31 31 H 1.09004 * 109.47386 * 59.99932 * 3 2 1 32 32 H 1.09002 * 109.46800 * 300.00344 * 4 2 1 33 33 H 1.09000 * 109.47248 * 59.99428 * 4 2 1 34 34 H 1.08992 * 109.47507 * 180.02562 * 4 2 1 35 35 H 0.97002 * 120.00080 * 0.02562 * 8 6 5 36 36 H 1.08997 * 113.53543 * 25.33559 * 11 9 8 37 37 H 1.08998 * 113.73879 * 254.47157 * 11 9 8 38 38 H 1.08994 * 109.47052 * 32.49864 * 14 12 11 39 39 H 1.09002 * 109.46569 * 152.49796 * 14 12 11 40 40 H 1.08996 * 109.47211 * 89.99822 * 18 17 16 41 41 H 0.96708 * 113.99848 * 180.02562 * 19 18 17 42 42 H 1.48506 * 109.99734 * 298.68165 * 20 18 17 43 43 H 1.48503 * 110.00070 * 59.99435 * 20 18 17 44 44 H 1.07995 * 119.55846 * 179.67717 * 22 21 17 45 45 H 1.07997 * 120.38704 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.81367 * 180.02562 * 24 23 22 47 47 H 1.09002 * 113.61445 * 139.98212 * 25 12 11 48 48 H 1.09002 * 113.61408 * 270.79943 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6656 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.7598 -4.3173 2.0450 11 6 2.8225 -5.0642 2.3455 12 6 2.2747 -5.8603 3.5418 13 1 1.5251 -6.6026 3.2675 14 6 3.3660 -6.4265 4.4525 15 8 3.7768 -7.7056 3.9654 16 6 4.7469 -8.3501 4.6659 17 6 5.1958 -9.5983 4.2604 18 6 4.6017 -10.2424 3.0343 19 8 3.2467 -9.8152 2.8812 20 14 4.6513 -12.0954 3.2205 21 7 6.1408 -10.2247 4.9335 22 6 6.6853 -9.7028 6.0150 23 6 6.2858 -8.4651 6.4840 24 6 5.2994 -7.7701 5.8035 25 6 1.6755 -4.5374 4.0473 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2490 35 1 2.6276 -2.2368 3.0829 36 1 3.8110 -4.6392 2.5196 37 1 2.7518 -5.5969 1.3972 38 1 4.2201 -5.7493 4.4605 39 1 2.9760 -6.5313 5.4650 40 1 5.1764 -9.9500 2.1556 41 1 2.8003 -10.1917 2.1103 42 1 6.0575 -12.5555 3.3488 43 1 3.8713 -12.5070 4.4153 44 1 7.4533 -10.2496 6.5417 45 1 6.7376 -8.0450 7.3705 46 1 4.9682 -6.8012 6.1470 47 1 0.6776 -4.6443 4.4726 48 1 2.3500 -3.9691 4.6878 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_15734236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:04:49 Heat of formation + Delta-G solvation = -84.376025 kcal Electronic energy + Delta-G solvation = -29335.917354 eV Core-core repulsion = 25166.200572 eV Total energy + Delta-G solvation = -4169.716783 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.98204 -41.80680 -40.47188 -39.00420 -37.86916 -37.59822 -35.42776 -34.26383 -33.60530 -32.00207 -29.34666 -28.38866 -28.32092 -27.36395 -26.73998 -25.25479 -23.92397 -23.21138 -22.22299 -21.41790 -20.54224 -19.28609 -18.98735 -18.65307 -17.99093 -17.57664 -17.32194 -17.20510 -16.92767 -16.64757 -16.18691 -15.86124 -15.60507 -15.40905 -15.36462 -15.02845 -14.63966 -14.57896 -14.36177 -14.01878 -13.85171 -13.49548 -13.39007 -13.37141 -13.14091 -12.95105 -12.88811 -12.84574 -12.63137 -12.54265 -12.47569 -12.30276 -12.13540 -12.06819 -11.72012 -11.41573 -11.33197 -11.12353 -11.03654 -10.74683 -10.26388 -10.16743 -9.31667 -4.93590 -0.08070 0.13783 1.15096 1.36384 1.71307 1.72062 2.04792 2.16880 2.59773 2.91121 3.13448 3.39252 3.46148 3.52497 3.69756 3.72306 3.74101 3.78453 3.82374 3.92506 3.95819 4.03479 4.15908 4.23775 4.26025 4.34281 4.41154 4.50202 4.59333 4.61069 4.62793 4.68502 4.74375 4.78344 4.78728 4.84928 4.85702 4.91776 4.95474 4.97530 5.02997 5.07297 5.17784 5.25162 5.30345 5.37483 5.49348 5.58101 6.24659 6.38413 6.75505 6.95648 7.32302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.689 5.689 9 C 0.135 3.865 10 H 0.105 0.895 11 C -0.143 4.143 12 C -0.095 4.095 13 H 0.104 0.896 14 C 0.059 3.941 15 O -0.284 6.284 16 C 0.098 3.902 17 C 0.065 3.935 18 C -0.059 4.059 19 O -0.545 6.545 20 Si 0.807 3.193 21 N -0.484 5.484 22 C 0.045 3.955 23 C -0.121 4.121 24 C -0.172 4.172 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.418 0.582 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.402 0.598 42 H -0.294 1.294 43 H -0.319 1.319 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.169 0.831 47 H 0.092 0.908 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 4.151 1.415 4.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.348 5.348 9 C 0.031 3.969 10 H 0.123 0.877 11 C -0.182 4.182 12 C -0.114 4.114 13 H 0.122 0.878 14 C -0.016 4.016 15 O -0.195 6.195 16 C 0.049 3.951 17 C -0.072 4.072 18 C -0.169 4.169 19 O -0.353 6.353 20 Si 0.714 3.286 21 N -0.196 5.196 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.199 4.199 25 C -0.157 4.157 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.255 0.745 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.253 0.747 42 H -0.222 1.222 43 H -0.249 1.249 44 H 0.197 0.803 45 H 0.191 0.809 46 H 0.186 0.814 47 H 0.111 0.889 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.598 2.816 1.482 3.238 hybrid contribution 0.336 1.370 0.942 1.696 sum 0.935 4.187 2.424 4.927 Atomic orbital electron populations 1.22474 0.94005 1.03709 1.03538 1.22345 0.94488 0.92571 0.81498 1.21894 1.02433 0.90885 1.04273 1.22474 1.01592 1.02269 0.97425 1.86309 1.71563 1.23374 1.47260 1.18443 0.78586 0.80690 0.82674 1.90905 1.42333 1.71054 1.44252 1.44761 1.54792 1.12261 1.23031 1.22573 0.98768 0.77046 0.98474 0.87726 1.23603 0.98946 0.96621 0.99036 1.22198 0.97340 0.96127 0.95778 0.87814 1.23087 0.97672 0.82357 0.98487 1.86343 1.50294 1.32586 1.50286 1.19875 0.90286 0.92653 0.92284 1.20472 0.96104 0.91481 0.99158 1.24403 0.86426 1.10606 0.95492 1.86470 1.22135 1.73756 1.52984 0.95158 0.77391 0.72645 0.83452 1.66950 1.08849 1.35309 1.08500 1.23057 1.00298 0.95207 0.92650 1.22390 0.95944 0.94651 1.01055 1.22185 0.99292 1.02925 0.95454 1.23349 1.03394 0.94172 0.94806 0.91889 0.89476 0.91779 0.91216 0.88332 0.91122 0.91807 0.89455 0.92011 0.74515 0.89023 0.91705 0.90641 0.90678 0.89067 0.74741 1.22218 1.24850 0.80288 0.80853 0.81367 0.88922 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 2 C 0.13 0.37 1.13 -10.80 -0.01 0.35 16 3 C -0.14 0.31 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -1.95 9.94 -55.43 -0.55 -2.50 16 6 C 0.64 4.10 8.06 129.79 1.05 5.15 16 7 O -0.59 -7.13 11.48 19.80 0.23 -6.90 16 8 N -0.69 0.37 5.36 -567.32 -3.04 -2.68 16 9 C 0.14 -0.27 4.25 45.58 0.19 -0.07 16 10 H 0.10 0.21 7.47 -2.39 -0.02 0.19 16 11 C -0.14 0.32 7.44 31.18 0.23 0.55 16 12 C -0.10 0.41 4.01 -10.27 -0.04 0.37 16 13 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 14 C 0.06 -0.20 4.60 71.98 0.33 0.13 16 15 O -0.28 -1.19 7.87 -70.70 -0.56 -1.75 16 16 C 0.10 0.60 6.56 22.60 0.15 0.75 16 17 C 0.07 0.61 6.11 42.67 0.26 0.87 16 18 C -0.06 -0.27 2.91 71.24 0.21 -0.06 16 19 O -0.55 -1.42 10.61 -127.13 -1.35 -2.77 16 20 Si 0.81 3.34 31.89 68.60 2.19 5.53 16 21 N -0.48 -5.08 8.38 -183.50 -1.54 -6.61 16 22 C 0.04 0.19 11.18 84.70 0.95 1.14 16 23 C -0.12 0.03 10.11 22.35 0.23 0.26 16 24 C -0.17 -0.14 9.14 22.56 0.21 0.07 16 25 C -0.12 0.89 7.39 31.12 0.23 1.12 16 26 H 0.06 0.14 8.14 -2.38 -0.02 0.13 16 27 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 33 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.42 -2.34 8.84 -92.71 -0.82 -3.16 16 36 H 0.09 -0.30 7.90 -2.39 -0.02 -0.31 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.08 -0.46 7.40 -2.39 -0.02 -0.48 16 39 H 0.08 -0.41 7.70 -2.39 -0.02 -0.43 16 40 H 0.09 0.13 7.96 -2.39 -0.02 0.12 16 41 H 0.40 -3.11 8.74 -74.05 -0.65 -3.76 16 42 H -0.29 -3.33 7.11 99.48 0.71 -2.62 16 43 H -0.32 -4.23 7.11 99.48 0.71 -3.52 16 44 H 0.18 -0.17 8.06 -2.91 -0.02 -0.20 16 45 H 0.17 -1.29 8.06 -2.91 -0.02 -1.32 16 46 H 0.17 -0.95 6.45 -2.91 -0.02 -0.97 16 47 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 48 H 0.11 -1.24 8.07 -2.39 -0.02 -1.26 16 Total: 0.00 -25.17 388.05 0.74 -24.42 By element: Atomic # 1 Polarization: -17.90 SS G_CDS: -0.45 Total: -18.35 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.82 Total: 11.60 kcal Atomic # 7 Polarization: -4.71 SS G_CDS: -4.58 Total: -9.29 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -2.23 Total: -13.92 kcal Atomic # 14 Polarization: 3.34 SS G_CDS: 2.19 Total: 5.53 kcal Total: -25.17 0.74 -24.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_15734236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.952 kcal (2) G-P(sol) polarization free energy of solvation -25.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds