Wall clock time and date at job start Mon Mar 8 2021 13:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47109 * 239.99822 * 2 1 3 5 5 Si 1.86296 * 109.47195 * 119.99935 * 2 1 3 6 6 C 1.86304 * 109.46993 * 300.00118 * 5 2 1 7 7 C 1.86301 * 109.47326 * 180.02562 * 5 2 1 8 8 O 1.63103 * 109.47257 * 60.00009 * 5 2 1 9 9 C 1.42900 * 113.99901 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.46675 * 179.97438 * 9 8 5 11 11 O 1.42904 * 109.46889 * 65.00411 * 10 9 8 12 12 C 1.42902 * 113.99822 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47042 * 179.97438 * 12 11 10 14 14 O 1.42902 * 109.47149 * 64.99667 * 13 12 11 15 15 C 1.35908 * 116.99825 * 179.97438 * 14 13 12 16 16 C 1.39094 * 120.47538 * 0.02562 * 15 14 13 17 17 C 1.38585 * 118.37394 * 179.97438 * 16 15 14 18 18 C 1.38209 * 119.22054 * 359.97438 * 17 16 15 19 19 N 1.31874 * 120.89310 * 0.02562 * 18 17 16 20 20 C 1.31817 * 121.77653 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.65467 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47076 * 210.00284 * 21 20 19 23 23 Si 1.86297 * 109.47204 * 330.00524 * 21 20 19 24 24 H 1.48494 * 109.47259 * 59.99916 * 23 21 20 25 25 H 1.48508 * 109.46877 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47263 * 299.99378 * 23 21 20 27 27 H 1.09002 * 109.47174 * 300.00265 * 1 2 3 28 28 H 1.09005 * 109.47001 * 60.00378 * 1 2 3 29 29 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47343 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46895 * 299.99687 * 3 2 1 32 32 H 1.09002 * 109.47334 * 59.99833 * 3 2 1 33 33 H 1.08996 * 109.47024 * 299.99738 * 4 2 1 34 34 H 1.09005 * 109.47352 * 60.00015 * 4 2 1 35 35 H 1.08998 * 109.47054 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46849 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.46965 * 299.99659 * 6 5 2 38 38 H 1.08997 * 109.47263 * 59.99655 * 6 5 2 39 39 H 1.09002 * 109.46881 * 299.99701 * 7 5 2 40 40 H 1.08996 * 109.47125 * 59.99483 * 7 5 2 41 41 H 1.08996 * 109.47168 * 180.02562 * 7 5 2 42 42 H 1.09003 * 109.47321 * 60.00073 * 9 8 5 43 43 H 1.08998 * 109.47173 * 299.99933 * 9 8 5 44 44 H 1.08996 * 109.47771 * 305.00244 * 10 9 8 45 45 H 1.09003 * 109.46756 * 184.99686 * 10 9 8 46 46 H 1.08992 * 109.47343 * 59.99629 * 12 11 10 47 47 H 1.09006 * 109.47089 * 299.99610 * 12 11 10 48 48 H 1.08991 * 109.46736 * 304.99582 * 13 12 11 49 49 H 1.08996 * 109.46886 * 184.99478 * 13 12 11 50 50 H 1.08001 * 120.81589 * 0.24645 * 16 15 14 51 51 H 1.07998 * 120.38566 * 180.02562 * 17 16 15 52 52 H 1.08002 * 119.55212 * 180.02562 * 18 17 16 53 53 H 1.08998 * 109.46592 * 90.00319 * 21 20 19 54 54 H 0.96701 * 114.00125 * 60.00265 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5212 9 6 2.0286 -3.1813 2.6520 10 6 1.4627 -4.5989 2.5477 11 8 2.0312 -5.2564 1.4133 12 6 1.5672 -6.5946 1.2242 13 6 2.2377 -7.1970 -0.0121 14 8 3.6434 -7.3131 0.2174 15 6 4.3920 -7.8347 -0.7899 16 6 3.7937 -8.2299 -1.9817 17 6 4.5984 -8.7556 -2.9800 18 6 5.9583 -8.8686 -2.7609 19 7 6.4944 -8.4843 -1.6190 20 6 5.7643 -7.9794 -0.6445 21 6 6.4267 -7.5562 0.6412 22 8 5.5081 -7.7130 1.7245 23 14 7.9297 -8.6148 0.9432 24 1 8.8843 -8.4517 -0.1825 25 1 8.5821 -8.1980 2.2105 26 1 7.5203 -10.0387 1.0429 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1393 35 1 3.1300 -0.7209 -1.2494 36 1 1.8937 -0.5135 3.9322 37 1 1.8933 1.0277 3.0422 38 1 0.4400 0.0001 3.0422 39 1 4.3777 -1.3912 0.6316 40 1 4.3770 0.1502 1.5217 41 1 4.3773 -1.3917 2.4113 42 1 1.6637 -2.7111 3.5653 43 1 3.1174 -3.2251 2.6759 44 1 0.3797 -4.5506 2.4346 45 1 1.7092 -5.1559 3.4517 46 1 0.4863 -6.5880 1.0839 47 1 1.8161 -7.1928 2.1008 48 1 2.0621 -6.5506 -0.8719 49 1 1.8189 -8.1840 -0.2080 50 1 2.7286 -8.1256 -2.1273 51 1 4.1680 -9.0725 -3.9185 52 1 6.5906 -9.2771 -3.5354 53 1 6.7272 -6.5110 0.5680 54 1 5.1977 -8.6204 1.8487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_16896866.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:27 Heat of formation + Delta-G solvation = -174.698539 kcal Electronic energy + Delta-G solvation = -31018.052582 eV Core-core repulsion = 26886.090592 eV Total energy + Delta-G solvation = -4131.961991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.198 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79719 -39.59323 -38.77501 -37.68861 -37.32831 -36.82716 -33.43060 -32.47761 -31.08510 -29.66692 -29.17525 -29.06036 -27.83870 -27.38305 -27.28839 -25.04114 -23.45260 -23.40726 -22.61963 -20.41644 -19.38470 -18.47967 -18.08489 -17.91143 -17.82082 -16.95736 -16.78103 -16.29582 -16.18070 -16.01788 -15.72109 -15.54412 -15.30393 -15.04270 -14.85149 -14.75498 -14.52448 -14.46748 -14.32049 -13.95524 -13.81285 -13.53913 -13.38363 -13.29495 -13.17851 -12.95958 -12.93391 -12.89322 -12.60289 -12.44476 -12.39537 -12.36477 -12.12748 -12.00504 -11.85160 -11.75966 -11.68117 -11.48507 -11.17513 -11.00232 -10.67692 -10.50515 -10.29075 -10.23244 -10.04642 -9.27027 0.02554 0.24194 1.23957 1.51152 1.55572 1.62987 1.80926 2.00462 2.14327 2.14742 2.50793 2.71918 2.75143 3.19568 3.41247 3.75574 3.87208 4.00678 4.09467 4.11863 4.12461 4.14395 4.19067 4.25592 4.26175 4.35970 4.45418 4.49508 4.50496 4.53953 4.62073 4.69324 4.72404 4.74624 4.75726 4.79384 4.80138 4.81234 4.83382 4.85686 4.99389 5.03216 5.08542 5.08828 5.09116 5.20100 5.33278 5.40428 5.44188 5.47859 5.54069 5.59569 5.64338 6.25879 6.36688 6.66779 6.93189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.635 6.635 9 C 0.075 3.925 10 C 0.056 3.944 11 O -0.398 6.398 12 C 0.062 3.938 13 C 0.049 3.951 14 O -0.287 6.287 15 C 0.092 3.908 16 C -0.172 4.172 17 C -0.122 4.122 18 C 0.050 3.950 19 N -0.473 5.473 20 C 0.040 3.960 21 C -0.063 4.063 22 O -0.530 6.530 23 Si 1.017 2.983 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.163 0.837 51 H 0.169 0.831 52 H 0.181 0.819 53 H 0.119 0.881 54 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -1.781 0.433 5.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.442 2.558 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.595 6.595 9 C 0.000 4.000 10 C -0.021 4.021 11 O -0.318 6.318 12 C -0.015 4.015 13 C -0.026 4.026 14 O -0.199 6.199 15 C 0.044 3.956 16 C -0.198 4.198 17 C -0.142 4.142 18 C -0.107 4.107 19 N -0.185 5.185 20 C -0.099 4.099 21 C -0.174 4.174 22 O -0.334 6.334 23 Si 0.840 3.160 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.194 1.194 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.180 0.820 51 H 0.187 0.813 52 H 0.198 0.802 53 H 0.137 0.863 54 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.953 -1.750 0.706 3.505 hybrid contribution -1.343 0.160 -0.559 1.463 sum -4.296 -1.590 0.147 4.583 Atomic orbital electron populations 1.21523 0.93979 1.01739 1.01953 1.25882 1.00599 1.02946 1.12918 1.21602 1.01124 0.94676 1.02347 1.21511 1.00688 0.99902 0.97108 0.76272 0.61999 0.53044 0.64493 1.27030 1.07017 1.09748 1.17744 1.27164 1.26238 1.04609 1.04066 1.85380 1.79216 1.46503 1.48371 1.22293 0.99239 0.90834 0.87632 1.22790 0.98226 0.92019 0.89023 1.87998 1.68542 1.26773 1.48510 1.22633 0.98097 0.83436 0.97295 1.23158 0.78805 1.01586 0.99042 1.86397 1.20041 1.76753 1.36663 1.19912 0.91889 0.94683 0.89154 1.22120 1.02603 1.02052 0.93036 1.22373 0.94219 0.97065 1.00521 1.23065 0.94398 0.98839 0.94405 1.67193 1.39603 1.09952 1.01754 1.21447 0.89030 1.01934 0.97488 1.24802 1.00886 1.08445 0.83229 1.86545 1.64147 1.34292 1.48452 0.84663 0.75829 0.77065 0.78396 1.18838 1.19758 1.19402 0.91821 0.93296 0.92618 0.92132 0.93048 0.91539 0.92887 0.93187 0.92684 0.90829 0.90361 0.90775 0.92036 0.90447 0.91357 0.88918 0.92144 0.91648 0.90463 0.89256 0.91505 0.91395 0.88085 0.81963 0.81346 0.80194 0.86303 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.16 7.85 71.98 0.56 0.40 16 2 C -0.38 -0.45 0.53 -10.79 -0.01 -0.46 16 3 C -0.14 0.00 7.85 71.98 0.56 0.56 16 4 C -0.13 -0.43 7.85 71.98 0.56 0.14 16 5 Si 1.31 -0.45 8.45 68.60 0.58 0.13 16 6 C -0.51 0.87 8.50 113.37 0.96 1.83 16 7 C -0.52 -0.93 8.50 113.37 0.96 0.03 16 8 O -0.64 -1.87 8.52 -144.33 -1.23 -3.10 16 9 C 0.08 0.00 5.50 71.98 0.40 0.40 16 10 C 0.06 -0.02 6.32 71.98 0.45 0.44 16 11 O -0.40 -1.87 10.27 -135.05 -1.39 -3.26 16 12 C 0.06 -0.10 6.32 71.98 0.45 0.35 16 13 C 0.05 -0.08 5.14 71.98 0.37 0.29 16 14 O -0.29 -1.26 7.84 -67.18 -0.53 -1.79 16 15 C 0.09 0.42 6.56 22.60 0.15 0.57 16 16 C -0.17 0.02 9.14 22.56 0.21 0.23 16 17 C -0.12 0.20 10.11 22.35 0.23 0.42 16 18 C 0.05 0.09 11.18 84.68 0.95 1.04 16 19 N -0.47 -3.38 8.37 -183.50 -1.54 -4.92 16 20 C 0.04 0.27 6.09 42.68 0.26 0.53 16 21 C -0.06 -0.34 2.92 71.24 0.21 -0.13 16 22 O -0.53 -2.59 10.63 -127.13 -1.35 -3.94 16 23 Si 1.02 5.24 27.17 68.60 1.86 7.10 16 24 H -0.26 -2.16 7.11 99.48 0.71 -1.45 16 25 H -0.27 -1.72 7.11 99.48 0.71 -1.01 16 26 H -0.27 -1.65 7.11 99.48 0.71 -0.94 16 27 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 28 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 29 H 0.05 0.11 7.96 -2.39 -0.02 0.09 16 30 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 31 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 33 H 0.05 0.24 7.96 -2.39 -0.02 0.22 16 34 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.05 0.15 7.79 -2.39 -0.02 0.13 16 36 H 0.07 -0.21 7.48 -2.39 -0.02 -0.23 16 37 H 0.08 -0.18 7.79 -2.39 -0.02 -0.19 16 38 H 0.07 -0.13 7.79 -2.39 -0.02 -0.14 16 39 H 0.06 0.25 7.79 -2.39 -0.02 0.23 16 40 H 0.08 0.03 7.79 -2.39 -0.02 0.02 16 41 H 0.07 0.09 7.48 -2.39 -0.02 0.07 16 42 H 0.09 -0.50 7.21 -2.39 -0.02 -0.52 16 43 H 0.06 0.03 7.21 -2.39 -0.02 0.02 16 44 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.07 -0.08 7.69 -2.39 -0.02 -0.10 16 49 H 0.10 -0.73 7.70 -2.39 -0.02 -0.75 16 50 H 0.16 -0.88 6.45 -2.91 -0.02 -0.90 16 51 H 0.17 -1.35 8.06 -2.91 -0.02 -1.38 16 52 H 0.18 -0.63 8.06 -2.91 -0.02 -0.66 16 53 H 0.12 0.62 7.96 -2.39 -0.02 0.60 16 54 H 0.38 -0.38 8.70 -74.06 -0.64 -1.02 16 Total: 0.00 -17.03 432.20 4.66 -12.37 By element: Atomic # 1 Polarization: -10.20 SS G_CDS: 0.96 Total: -9.24 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 7.29 Total: 6.64 kcal Atomic # 7 Polarization: -3.38 SS G_CDS: -1.54 Total: -4.92 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -4.50 Total: -12.08 kcal Atomic # 14 Polarization: 4.78 SS G_CDS: 2.44 Total: 7.23 kcal Total: -17.03 4.66 -12.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_16896866.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.331 kcal (2) G-P(sol) polarization free energy of solvation -17.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds