Wall clock time and date at job start Mon Mar 8 2021 14:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 C 1.53007 * 109.46970 * 240.00105 * 2 1 3 5 5 Si 1.86297 * 109.47183 * 120.00148 * 2 1 3 6 6 C 1.86299 * 109.47194 * 299.99868 * 5 2 1 7 7 C 1.86301 * 109.47040 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.47184 * 60.00242 * 5 2 1 9 9 C 1.42901 * 114.00391 * 180.02562 * 8 5 2 10 10 C 1.52992 * 109.47537 * 179.97438 * 9 8 5 11 11 C 1.53003 * 109.47296 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47149 * 180.02562 * 11 10 9 13 13 C 1.35908 * 116.99825 * 179.97438 * 12 11 10 14 14 C 1.39094 * 120.47538 * 0.02562 * 13 12 11 15 15 C 1.38585 * 118.37394 * 179.97438 * 14 13 12 16 16 C 1.38209 * 119.22054 * 359.97438 * 15 14 13 17 17 N 1.31874 * 120.89310 * 0.02562 * 16 15 14 18 18 C 1.31817 * 121.77653 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.65467 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47076 * 210.00284 * 19 18 17 21 21 Si 1.86297 * 109.47204 * 330.00524 * 19 18 17 22 22 H 1.48494 * 109.47259 * 59.99916 * 21 19 18 23 23 H 1.48508 * 109.46877 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 299.99378 * 21 19 18 25 25 H 1.08998 * 109.46766 * 299.99946 * 1 2 3 26 26 H 1.08998 * 109.47038 * 59.99763 * 1 2 3 27 27 H 1.09008 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46767 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47397 * 300.00017 * 3 2 1 30 30 H 1.08998 * 109.47296 * 60.00379 * 3 2 1 31 31 H 1.08994 * 109.46963 * 300.00137 * 4 2 1 32 32 H 1.08998 * 109.47133 * 60.00189 * 4 2 1 33 33 H 1.08999 * 109.47004 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47193 * 179.97438 * 6 5 2 35 35 H 1.08994 * 109.46924 * 299.99887 * 6 5 2 36 36 H 1.08999 * 109.46982 * 59.99852 * 6 5 2 37 37 H 1.09006 * 109.47266 * 299.99942 * 7 5 2 38 38 H 1.08994 * 109.47339 * 59.99953 * 7 5 2 39 39 H 1.08998 * 109.46895 * 180.02562 * 7 5 2 40 40 H 1.09007 * 109.47152 * 59.99230 * 9 8 5 41 41 H 1.09001 * 109.46562 * 299.99871 * 9 8 5 42 42 H 1.09007 * 109.47135 * 59.99701 * 10 9 8 43 43 H 1.09001 * 109.47482 * 299.99789 * 10 9 8 44 44 H 1.08991 * 109.46736 * 60.00022 * 11 10 9 45 45 H 1.08996 * 109.46886 * 299.99917 * 11 10 9 46 46 H 1.08001 * 120.81589 * 0.24645 * 14 13 12 47 47 H 1.07998 * 120.38566 * 180.02562 * 15 14 13 48 48 H 1.08002 * 119.55212 * 180.02562 * 16 15 14 49 49 H 1.08998 * 109.46592 * 90.00319 * 19 18 17 50 50 H 0.96701 * 114.00125 * 60.00265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5206 8 8 1.6075 -2.4160 1.5210 9 6 2.0286 -3.1815 2.6518 10 6 1.4629 -4.5991 2.5475 11 6 1.9144 -5.4189 3.7579 12 8 1.3864 -6.7432 3.6601 13 6 1.6961 -7.6065 4.6630 14 6 2.4927 -7.1956 5.7267 15 6 2.7808 -8.1115 6.7260 16 6 2.2711 -9.3929 6.6341 17 7 1.5187 -9.7506 5.6119 18 6 1.2213 -8.9100 4.6411 19 6 0.3577 -9.3699 3.4950 20 8 0.7127 -8.6506 2.3124 21 14 0.6175 -11.1932 3.2143 22 1 0.2485 -11.9408 4.4431 23 1 -0.2332 -11.6463 2.0844 24 1 2.0446 -11.4459 2.8909 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7217 -1.2491 34 1 1.8931 -0.5142 3.9322 35 1 1.8935 1.0275 3.0422 36 1 0.4401 0.0000 3.0422 37 1 4.3771 -1.3930 0.6306 38 1 4.3778 0.1486 1.5204 39 1 4.3774 -1.3932 2.4104 40 1 1.6638 -2.7113 3.5652 41 1 3.1175 -3.2253 2.6757 42 1 1.8273 -5.0695 1.6341 43 1 0.3740 -4.5550 2.5238 44 1 1.5502 -4.9487 4.6713 45 1 3.0032 -5.4630 3.7811 46 1 2.8736 -6.1861 5.7750 47 1 3.3958 -7.8271 7.5669 48 1 2.4920 -10.1109 7.4101 49 1 -0.6899 -9.1845 3.7323 50 1 1.6334 -8.7692 2.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10177732_18527724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:37 Heat of formation + Delta-G solvation = -144.426638 kcal Electronic energy + Delta-G solvation = -26174.519484 eV Core-core repulsion = 22518.089992 eV Total energy + Delta-G solvation = -3656.429492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.182 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83684 -39.43493 -38.21098 -37.61721 -36.86935 -33.72189 -33.45948 -31.43733 -29.49609 -29.14486 -27.90278 -27.42429 -27.27907 -27.00010 -24.04793 -23.41885 -22.27883 -20.46035 -19.32146 -18.49021 -17.94846 -17.59187 -17.57915 -16.85052 -16.47727 -16.02433 -15.89596 -15.58246 -15.43910 -15.03637 -14.91100 -14.75264 -14.54564 -14.38955 -14.28355 -14.02485 -13.77410 -13.52910 -13.45176 -13.38955 -13.24905 -13.00162 -12.96238 -12.92694 -12.45506 -12.43570 -12.24734 -12.09085 -11.93425 -11.75250 -11.74485 -11.69785 -11.47558 -11.39384 -11.00268 -10.68003 -10.42884 -10.19633 -10.11605 -9.29347 -0.00132 0.20628 1.29635 1.35750 1.68553 1.68853 1.80731 1.99204 2.05187 2.18594 2.43297 2.71422 3.17328 3.39972 3.65146 3.75062 3.80802 3.89783 3.97530 4.02197 4.08507 4.09184 4.14854 4.15623 4.22646 4.35077 4.43808 4.45836 4.60066 4.63813 4.65974 4.66563 4.73130 4.77776 4.82745 4.94482 4.96944 4.97992 4.99804 5.02544 5.07749 5.07806 5.17045 5.30710 5.38005 5.38511 5.40688 5.47324 5.49978 5.54379 6.21474 6.62117 6.92152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.622 6.622 9 C 0.090 3.910 10 C -0.120 4.120 11 C 0.052 3.948 12 O -0.277 6.277 13 C 0.102 3.898 14 C -0.169 4.169 15 C -0.128 4.128 16 C 0.064 3.936 17 N -0.447 5.447 18 C 0.064 3.936 19 C -0.067 4.067 20 O -0.522 6.522 21 Si 0.981 3.019 22 H -0.244 1.244 23 H -0.262 1.262 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.162 0.838 49 H 0.124 0.876 50 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 2.342 2.258 4.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.158 4.158 11 C -0.024 4.024 12 O -0.188 6.188 13 C 0.053 3.947 14 C -0.195 4.195 15 C -0.148 4.148 16 C -0.092 4.092 17 N -0.158 5.158 18 C -0.076 4.076 19 C -0.178 4.178 20 O -0.325 6.325 21 Si 0.802 3.198 22 H -0.167 1.167 23 H -0.186 1.186 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.180 0.820 49 H 0.142 0.858 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.751 0.612 1.777 2.569 hybrid contribution 1.347 2.001 0.684 2.508 sum 3.099 2.614 2.461 4.742 Atomic orbital electron populations 1.21517 0.93771 1.02075 1.01802 1.25784 1.00730 1.02616 1.12704 1.21557 1.00754 0.94918 1.02166 1.21515 1.00576 1.00303 0.96760 0.76699 0.62975 0.53355 0.65020 1.27039 1.07082 1.09518 1.17700 1.27038 1.25076 1.04762 1.04441 1.85337 1.79324 1.46049 1.47443 1.21802 0.98012 0.91660 0.87127 1.21476 1.03507 0.92878 0.97909 1.22779 0.98458 0.81514 0.99619 1.86346 1.69830 1.20946 1.41716 1.19790 0.95248 0.90842 0.88812 1.21799 1.01042 1.01568 0.95105 1.22046 0.99709 0.94077 0.98974 1.22625 0.95125 0.95379 0.96103 1.67240 1.12141 1.35070 1.01341 1.21410 1.00561 0.88286 0.97336 1.24866 1.00587 1.09248 0.83051 1.86570 1.32789 1.72605 1.40526 0.85165 0.80584 0.73434 0.80572 1.16671 1.18602 1.18480 0.92718 0.92765 0.92093 0.92530 0.92475 0.92528 0.92097 0.92763 0.92720 0.91553 0.90677 0.90816 0.90814 0.90679 0.91554 0.92515 0.92489 0.89399 0.89477 0.91852 0.91789 0.84106 0.84203 0.82047 0.85846 0.78134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.20 0.53 -90.62 -0.05 0.15 16 3 C -0.14 0.12 7.85 37.15 0.29 0.41 16 4 C -0.13 0.01 7.85 37.16 0.29 0.31 16 5 Si 1.29 -1.95 8.45 -169.99 -1.44 -3.39 16 6 C -0.51 0.62 8.50 101.05 0.86 1.48 16 7 C -0.51 0.66 8.50 101.05 0.86 1.52 16 8 O -0.62 0.14 8.56 -35.23 -0.30 -0.16 16 9 C 0.09 -0.16 5.12 37.15 0.19 0.03 16 10 C -0.12 0.14 5.95 -26.73 -0.16 -0.02 16 11 C 0.05 -0.09 4.76 37.16 0.18 0.09 16 12 O -0.28 -0.28 7.87 -42.30 -0.33 -0.61 16 13 C 0.10 0.13 6.56 -39.08 -0.26 -0.12 16 14 C -0.17 0.07 9.14 -39.14 -0.36 -0.28 16 15 C -0.13 0.12 10.11 -39.46 -0.40 -0.28 16 16 C 0.06 0.02 11.18 -17.54 -0.20 -0.17 16 17 N -0.45 -1.14 8.37 -9.35 -0.08 -1.22 16 18 C 0.06 0.14 6.09 -82.41 -0.50 -0.36 16 19 C -0.07 -0.09 2.92 36.01 0.11 0.01 16 20 O -0.52 -0.77 10.63 -58.08 -0.62 -1.39 16 21 Si 0.98 1.48 27.17 -169.99 -4.62 -3.14 16 22 H -0.24 -0.67 7.11 56.52 0.40 -0.27 16 23 H -0.26 -0.60 7.11 56.52 0.40 -0.20 16 24 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 25 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 26 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.06 0.01 7.97 -51.92 -0.41 -0.40 16 28 H 0.06 -0.08 7.79 -51.92 -0.40 -0.49 16 29 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 34 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 35 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 37 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 39 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 40 H 0.06 -0.18 7.21 -51.92 -0.37 -0.56 16 41 H 0.06 -0.19 7.21 -51.93 -0.37 -0.56 16 42 H 0.09 -0.05 8.14 -51.92 -0.42 -0.48 16 43 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.06 -0.17 7.69 -51.93 -0.40 -0.57 16 45 H 0.06 -0.20 7.70 -51.93 -0.40 -0.60 16 46 H 0.14 -0.39 6.45 -52.49 -0.34 -0.73 16 47 H 0.14 -0.49 8.06 -52.49 -0.42 -0.91 16 48 H 0.16 -0.33 8.06 -52.49 -0.42 -0.76 16 49 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16 50 H 0.37 -0.46 8.70 45.56 0.40 -0.06 16 LS Contribution 398.25 15.07 6.00 6.00 Total: 0.00 -5.66 398.25 -8.74 -14.40 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -8.50 Total: -13.55 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 1.15 Total: 3.05 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Atomic # 8 Polarization: -0.91 SS G_CDS: -1.25 Total: -2.16 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -6.06 Total: -6.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -5.66 -8.74 -14.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_18527724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.026 kcal (2) G-P(sol) polarization free energy of solvation -5.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds