Wall clock time and date at job start Mon Mar 8 2021 14:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 C 1.53007 * 109.46970 * 240.00105 * 2 1 3 5 5 Si 1.86297 * 109.47183 * 120.00148 * 2 1 3 6 6 C 1.86299 * 109.47194 * 299.99868 * 5 2 1 7 7 C 1.86301 * 109.47040 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.47184 * 60.00242 * 5 2 1 9 9 C 1.42901 * 114.00391 * 180.02562 * 8 5 2 10 10 C 1.52992 * 109.47537 * 179.97438 * 9 8 5 11 11 C 1.53003 * 109.47296 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47149 * 180.02562 * 11 10 9 13 13 C 1.35908 * 116.99825 * 179.97438 * 12 11 10 14 14 C 1.39094 * 120.47538 * 0.02562 * 13 12 11 15 15 C 1.38585 * 118.37394 * 179.97438 * 14 13 12 16 16 C 1.38209 * 119.22054 * 359.97438 * 15 14 13 17 17 N 1.31874 * 120.89310 * 0.02562 * 16 15 14 18 18 C 1.31817 * 121.77653 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.65467 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47076 * 210.00284 * 19 18 17 21 21 Si 1.86297 * 109.47204 * 330.00524 * 19 18 17 22 22 H 1.48494 * 109.47259 * 59.99916 * 21 19 18 23 23 H 1.48508 * 109.46877 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 299.99378 * 21 19 18 25 25 H 1.08998 * 109.46766 * 299.99946 * 1 2 3 26 26 H 1.08998 * 109.47038 * 59.99763 * 1 2 3 27 27 H 1.09008 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46767 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47397 * 300.00017 * 3 2 1 30 30 H 1.08998 * 109.47296 * 60.00379 * 3 2 1 31 31 H 1.08994 * 109.46963 * 300.00137 * 4 2 1 32 32 H 1.08998 * 109.47133 * 60.00189 * 4 2 1 33 33 H 1.08999 * 109.47004 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47193 * 179.97438 * 6 5 2 35 35 H 1.08994 * 109.46924 * 299.99887 * 6 5 2 36 36 H 1.08999 * 109.46982 * 59.99852 * 6 5 2 37 37 H 1.09006 * 109.47266 * 299.99942 * 7 5 2 38 38 H 1.08994 * 109.47339 * 59.99953 * 7 5 2 39 39 H 1.08998 * 109.46895 * 180.02562 * 7 5 2 40 40 H 1.09007 * 109.47152 * 59.99230 * 9 8 5 41 41 H 1.09001 * 109.46562 * 299.99871 * 9 8 5 42 42 H 1.09007 * 109.47135 * 59.99701 * 10 9 8 43 43 H 1.09001 * 109.47482 * 299.99789 * 10 9 8 44 44 H 1.08991 * 109.46736 * 60.00022 * 11 10 9 45 45 H 1.08996 * 109.46886 * 299.99917 * 11 10 9 46 46 H 1.08001 * 120.81589 * 0.24645 * 14 13 12 47 47 H 1.07998 * 120.38566 * 180.02562 * 15 14 13 48 48 H 1.08002 * 119.55212 * 180.02562 * 16 15 14 49 49 H 1.08998 * 109.46592 * 90.00319 * 19 18 17 50 50 H 0.96701 * 114.00125 * 60.00265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5206 8 8 1.6075 -2.4160 1.5210 9 6 2.0286 -3.1815 2.6518 10 6 1.4629 -4.5991 2.5475 11 6 1.9144 -5.4189 3.7579 12 8 1.3864 -6.7432 3.6601 13 6 1.6961 -7.6065 4.6630 14 6 2.4927 -7.1956 5.7267 15 6 2.7808 -8.1115 6.7260 16 6 2.2711 -9.3929 6.6341 17 7 1.5187 -9.7506 5.6119 18 6 1.2213 -8.9100 4.6411 19 6 0.3577 -9.3699 3.4950 20 8 0.7127 -8.6506 2.3124 21 14 0.6175 -11.1932 3.2143 22 1 0.2485 -11.9408 4.4431 23 1 -0.2332 -11.6463 2.0844 24 1 2.0446 -11.4459 2.8909 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7217 -1.2491 34 1 1.8931 -0.5142 3.9322 35 1 1.8935 1.0275 3.0422 36 1 0.4401 0.0000 3.0422 37 1 4.3771 -1.3930 0.6306 38 1 4.3778 0.1486 1.5204 39 1 4.3774 -1.3932 2.4104 40 1 1.6638 -2.7113 3.5652 41 1 3.1175 -3.2253 2.6757 42 1 1.8273 -5.0695 1.6341 43 1 0.3740 -4.5550 2.5238 44 1 1.5502 -4.9487 4.6713 45 1 3.0032 -5.4630 3.7811 46 1 2.8736 -6.1861 5.7750 47 1 3.3958 -7.8271 7.5669 48 1 2.4920 -10.1109 7.4101 49 1 -0.6899 -9.1845 3.7323 50 1 1.6334 -8.7692 2.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_18527724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:36 Heat of formation + Delta-G solvation = -136.319854 kcal Electronic energy + Delta-G solvation = -26174.167947 eV Core-core repulsion = 22518.089992 eV Total energy + Delta-G solvation = -3656.077955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.182 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.80243 -39.37601 -38.09878 -37.67852 -36.81895 -33.61697 -33.41830 -31.40979 -29.36649 -29.05142 -27.83474 -27.37089 -27.29916 -26.85928 -23.97446 -23.38498 -22.17570 -20.41001 -19.27193 -18.48066 -17.91485 -17.51774 -17.45982 -16.84049 -16.44376 -15.95642 -15.84959 -15.53235 -15.43121 -14.94880 -14.85491 -14.71772 -14.53493 -14.46426 -14.21084 -13.91943 -13.69321 -13.42046 -13.34495 -13.28247 -13.13574 -12.94866 -12.93115 -12.81496 -12.46162 -12.38985 -12.23114 -12.12296 -11.96038 -11.81657 -11.69055 -11.67852 -11.33408 -11.28355 -10.99936 -10.66002 -10.29239 -10.24119 -10.04499 -9.27976 0.03071 0.24275 1.24766 1.45601 1.51763 1.64142 1.79927 2.00911 2.14754 2.15580 2.54918 2.73188 3.19630 3.41031 3.77049 3.87865 3.93447 4.04589 4.11969 4.13341 4.13379 4.15067 4.28975 4.38834 4.43751 4.47345 4.50445 4.51019 4.70777 4.75793 4.76550 4.79462 4.80832 4.83182 4.83496 5.00756 5.02746 5.08792 5.09929 5.10132 5.10911 5.12396 5.23123 5.35837 5.41599 5.45807 5.49914 5.57764 5.63063 5.65885 6.29809 6.65755 6.93633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.518 4.518 7 C -0.517 4.517 8 O -0.642 6.642 9 C 0.080 3.920 10 C -0.117 4.117 11 C 0.048 3.952 12 O -0.294 6.294 13 C 0.092 3.908 14 C -0.169 4.169 15 C -0.122 4.122 16 C 0.051 3.949 17 N -0.474 5.474 18 C 0.040 3.960 19 C -0.063 4.063 20 O -0.532 6.532 21 Si 1.015 2.985 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.167 0.833 47 H 0.170 0.830 48 H 0.180 0.820 49 H 0.124 0.876 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 3.285 3.639 6.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.619 4.619 8 O -0.601 6.601 9 C 0.005 3.995 10 C -0.155 4.155 11 C -0.027 4.027 12 O -0.206 6.206 13 C 0.043 3.957 14 C -0.195 4.195 15 C -0.142 4.142 16 C -0.106 4.106 17 N -0.186 5.186 18 C -0.098 4.098 19 C -0.174 4.174 20 O -0.337 6.337 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.196 1.196 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.184 0.816 47 H 0.187 0.813 48 H 0.197 0.803 49 H 0.142 0.858 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.027 1.566 3.136 4.631 hybrid contribution 0.963 1.715 0.263 1.984 sum 3.990 3.280 3.399 6.183 Atomic orbital electron populations 1.21544 0.94433 1.01680 1.01792 1.25974 1.00288 1.03112 1.13406 1.21599 1.01312 0.94676 1.02164 1.21542 1.01052 0.99971 0.96865 0.76152 0.62603 0.52568 0.63882 1.27095 1.06794 1.09879 1.18188 1.27080 1.25046 1.05050 1.04684 1.85328 1.79780 1.46737 1.48277 1.22012 0.99190 0.91019 0.87268 1.21427 1.02513 0.93636 0.97906 1.22937 0.99562 0.80395 0.99786 1.86317 1.70326 1.21949 1.41979 1.19872 0.95711 0.90654 0.89472 1.22144 1.00196 1.02825 0.94357 1.22386 0.99059 0.93265 0.99474 1.23077 0.94839 0.96682 0.96020 1.67199 1.13278 1.35911 1.02213 1.21440 1.01587 0.89119 0.97683 1.24791 1.00749 1.08702 0.83163 1.86535 1.33783 1.72702 1.40632 0.84674 0.79227 0.73406 0.78764 1.18748 1.19956 1.19639 0.92069 0.93463 0.92665 0.91722 0.93290 0.91776 0.92637 0.93475 0.91996 0.90728 0.90398 0.91332 0.91220 0.90407 0.90684 0.90915 0.90638 0.90473 0.91067 0.90458 0.89910 0.81597 0.81273 0.80264 0.85826 0.77008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.10 7.85 71.98 0.56 0.47 16 2 C -0.39 0.28 0.53 -10.79 -0.01 0.28 16 3 C -0.14 0.24 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 5 Si 1.32 -4.72 8.45 68.60 0.58 -4.14 16 6 C -0.52 1.78 8.50 113.37 0.96 2.74 16 7 C -0.52 1.93 8.50 113.37 0.96 2.89 16 8 O -0.64 0.43 8.56 -148.98 -1.28 -0.84 16 9 C 0.08 -0.37 5.12 71.98 0.37 -0.01 16 10 C -0.12 0.28 5.95 30.59 0.18 0.47 16 11 C 0.05 -0.21 4.76 71.98 0.34 0.13 16 12 O -0.29 -0.60 7.87 -70.66 -0.56 -1.15 16 13 C 0.09 0.22 6.56 22.60 0.15 0.37 16 14 C -0.17 0.41 9.14 22.56 0.21 0.62 16 15 C -0.12 0.43 10.11 22.35 0.23 0.66 16 16 C 0.05 0.02 11.18 84.68 0.95 0.96 16 17 N -0.47 -2.71 8.37 -183.50 -1.54 -4.25 16 18 C 0.04 0.20 6.09 42.68 0.26 0.46 16 19 C -0.06 -0.25 2.92 71.24 0.21 -0.05 16 20 O -0.53 -2.18 10.63 -127.13 -1.35 -3.53 16 21 Si 1.01 4.62 27.17 68.60 1.86 6.48 16 22 H -0.26 -1.95 7.11 99.48 0.71 -1.25 16 23 H -0.27 -1.67 7.11 99.48 0.71 -0.97 16 24 H -0.27 -1.61 7.11 99.48 0.71 -0.90 16 25 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 26 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.05 0.09 7.97 -2.38 -0.02 0.07 16 28 H 0.06 -0.22 7.79 -2.38 -0.02 -0.24 16 29 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 32 H 0.05 0.07 8.14 -2.39 -0.02 0.06 16 33 H 0.06 -0.08 7.79 -2.39 -0.02 -0.09 16 34 H 0.07 -0.38 7.48 -2.39 -0.02 -0.39 16 35 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 36 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 37 H 0.07 -0.19 7.79 -2.38 -0.02 -0.20 16 38 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 39 H 0.07 -0.40 7.48 -2.39 -0.02 -0.42 16 40 H 0.07 -0.58 7.21 -2.38 -0.02 -0.60 16 41 H 0.08 -0.64 7.21 -2.39 -0.02 -0.66 16 42 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.08 -0.56 7.69 -2.39 -0.02 -0.58 16 45 H 0.08 -0.68 7.70 -2.39 -0.02 -0.70 16 46 H 0.17 -1.38 6.45 -2.91 -0.02 -1.40 16 47 H 0.17 -1.68 8.06 -2.91 -0.02 -1.70 16 48 H 0.18 -0.86 8.06 -2.91 -0.02 -0.88 16 49 H 0.12 0.37 7.96 -2.39 -0.02 0.36 16 50 H 0.38 -0.50 8.70 -74.06 -0.64 -1.14 16 Total: 0.00 -14.09 398.25 5.23 -8.86 By element: Atomic # 1 Polarization: -13.71 SS G_CDS: 1.00 Total: -12.71 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.50 Total: 11.29 kcal Atomic # 7 Polarization: -2.71 SS G_CDS: -1.54 Total: -4.25 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -3.18 Total: -5.53 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.44 Total: 2.34 kcal Total: -14.09 5.23 -8.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_18527724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.463 kcal (2) G-P(sol) polarization free energy of solvation -14.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds