Wall clock time and date at job start Mon Mar 8 2021 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86298 * 109.47068 * 2 1 4 4 C 1.86301 * 109.47077 * 240.00222 * 2 1 3 5 5 C 1.86299 * 109.47170 * 120.00124 * 2 1 3 6 6 O 1.42900 * 109.47241 * 66.09386 * 5 2 1 7 7 C 1.35909 * 116.99988 * 77.80692 * 6 5 2 8 8 C 1.39101 * 120.47704 * 6.21693 * 7 6 5 9 9 C 1.38570 * 118.37742 * 179.97438 * 8 7 6 10 10 C 1.38215 * 119.22442 * 0.25337 * 9 8 7 11 11 N 1.31876 * 120.88301 * 359.47401 * 10 9 8 12 12 C 1.31805 * 121.78205 * 0.54141 * 11 10 9 13 13 C 1.50700 * 119.65866 * 179.70579 * 12 11 10 14 14 O 1.42905 * 109.47013 * 210.02209 * 13 12 11 15 15 Si 1.86302 * 109.47061 * 330.02012 * 13 12 11 16 16 H 1.48495 * 109.47251 * 60.00275 * 15 13 12 17 17 H 1.48504 * 109.47138 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47184 * 299.99968 * 15 13 12 19 19 H 1.09002 * 109.46948 * 300.00120 * 1 2 3 20 20 H 1.09001 * 109.47253 * 60.00031 * 1 2 3 21 21 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47338 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.47471 * 300.00405 * 3 2 1 24 24 H 1.09002 * 109.47334 * 60.00116 * 3 2 1 25 25 H 1.09003 * 109.46947 * 294.78619 * 4 2 1 26 26 H 1.09004 * 109.46814 * 54.78101 * 4 2 1 27 27 H 1.08997 * 109.47111 * 174.78378 * 4 2 1 28 28 H 1.09000 * 109.47102 * 306.08965 * 5 2 1 29 29 H 1.09000 * 109.47032 * 186.09144 * 5 2 1 30 30 H 1.08005 * 120.80911 * 359.95318 * 8 7 6 31 31 H 1.08002 * 120.38942 * 179.97438 * 9 8 7 32 32 H 1.08001 * 119.55524 * 179.74988 * 10 9 8 33 33 H 1.09001 * 109.47300 * 90.02332 * 13 12 11 34 34 H 0.96704 * 114.00161 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 8 2.1281 -2.2605 1.4518 7 6 2.8817 -3.0519 0.6438 8 6 4.0224 -2.5481 0.0274 9 6 4.7587 -3.3933 -0.7871 10 6 4.3364 -4.6975 -0.9635 11 7 3.2526 -5.1455 -0.3603 12 6 2.5245 -4.3742 0.4221 13 6 1.2911 -4.9341 1.0825 14 8 0.3333 -3.8896 1.2663 15 14 0.5591 -6.2652 0.0039 16 1 1.5543 -7.3506 -0.1870 17 1 -0.6567 -6.8165 0.6544 18 1 0.1958 -5.6889 -1.3156 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.5740 1.7565 -0.0005 23 1 2.1206 2.2704 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1989 -1.9293 -1.4757 26 1 2.0463 -0.4211 -2.4087 27 1 3.5700 -0.7980 -1.5691 28 1 2.0344 -0.4312 2.4077 29 1 3.5686 -0.7848 1.5773 30 1 4.3265 -1.5230 0.1798 31 1 5.6497 -3.0360 -1.2819 32 1 4.9040 -5.3597 -1.6004 33 1 1.5577 -5.3571 2.0511 34 1 -0.4881 -4.1786 1.6869 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10177732_3095236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:57 Heat of formation + Delta-G solvation = -63.563292 kcal Electronic energy + Delta-G solvation = -16279.072160 eV Core-core repulsion = 13722.519454 eV Total energy + Delta-G solvation = -2556.552707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72911 -38.95698 -37.56213 -33.55492 -31.83882 -29.78002 -28.50248 -28.43978 -27.85781 -27.16828 -23.68338 -22.87652 -19.02032 -18.59649 -17.64949 -17.19630 -16.69488 -16.00282 -15.38059 -15.08089 -14.97256 -14.66062 -14.32895 -14.08056 -13.90836 -13.83022 -13.47434 -13.29850 -13.26281 -13.20535 -13.07255 -12.65841 -12.31334 -11.87617 -11.73876 -11.04370 -10.90247 -10.87682 -10.77014 -10.44882 -10.04259 -8.95533 0.12076 0.34228 1.36511 1.46336 1.65282 1.68812 1.72782 1.78960 2.21956 2.44668 2.49396 2.80987 3.03170 3.61854 3.83704 4.01532 4.06050 4.24638 4.33193 4.43479 4.59433 4.60012 4.62505 4.69445 4.71944 4.74130 4.79568 4.85576 5.08162 5.14185 5.36272 5.48481 5.51394 5.59720 6.34967 6.73134 7.00294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.989 3.011 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.250 4.250 6 O -0.253 6.253 7 C 0.106 3.894 8 C -0.166 4.166 9 C -0.131 4.131 10 C 0.063 3.937 11 N -0.450 5.450 12 C 0.100 3.900 13 C -0.067 4.067 14 O -0.533 6.533 15 Si 0.975 3.025 16 H -0.243 1.243 17 H -0.265 1.265 18 H -0.256 1.256 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 2.221 0.438 2.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.185 2.815 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.371 4.371 6 O -0.163 6.163 7 C 0.057 3.943 8 C -0.192 4.192 9 C -0.151 4.151 10 C -0.094 4.094 11 N -0.161 5.161 12 C -0.039 4.039 13 C -0.178 4.178 14 O -0.337 6.337 15 Si 0.796 3.204 16 H -0.166 1.166 17 H -0.190 1.190 18 H -0.180 1.180 19 H 0.088 0.912 20 H 0.087 0.913 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.179 0.821 33 H 0.099 0.901 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.590 1.030 -0.316 1.228 hybrid contribution 0.441 1.170 0.673 1.420 sum 1.031 2.199 0.357 2.455 Atomic orbital electron populations 1.25985 1.19577 1.05258 1.04227 0.79825 0.69007 0.66543 0.66076 1.26090 1.06221 1.18453 1.04925 1.26442 1.05990 1.08262 1.15010 1.28198 1.05191 0.86071 1.17659 1.86295 1.51391 1.18465 1.60192 1.19759 0.90691 0.91962 0.91931 1.21786 0.95559 1.01670 1.00200 1.21985 1.00365 0.94555 0.98149 1.22527 0.93632 0.94390 0.98876 1.67075 1.06402 1.36282 1.06388 1.19898 0.96842 0.88833 0.98359 1.24385 0.90065 0.98316 1.04988 1.86520 1.28509 1.34457 1.84229 0.85253 0.78754 0.77261 0.79094 1.16625 1.19019 1.17974 0.91245 0.91330 0.90237 0.91181 0.90702 0.90965 0.91025 0.91007 0.91031 0.87202 0.91458 0.83894 0.84310 0.82119 0.90093 0.77283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.18 8.65 101.05 0.87 1.05 16 2 Si 0.99 -1.95 11.70 -169.99 -1.99 -3.94 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.45 0.22 7.03 101.05 0.71 0.93 16 5 C -0.25 0.21 5.31 101.05 0.54 0.74 16 6 O -0.25 -0.55 7.53 -42.30 -0.32 -0.87 16 7 C 0.11 0.27 5.03 -39.07 -0.20 0.07 16 8 C -0.17 -0.10 5.73 -39.14 -0.22 -0.33 16 9 C -0.13 0.00 10.11 -39.47 -0.40 -0.40 16 10 C 0.06 0.08 11.18 -17.54 -0.20 -0.11 16 11 N -0.45 -1.60 8.37 -9.35 -0.08 -1.68 16 12 C 0.10 0.34 6.12 -82.41 -0.50 -0.16 16 13 C -0.07 -0.11 2.91 36.01 0.10 0.00 16 14 O -0.53 -0.54 10.61 -58.08 -0.62 -1.15 16 15 Si 0.98 1.74 27.17 -169.99 -4.62 -2.88 16 16 H -0.24 -0.76 7.11 56.52 0.40 -0.36 16 17 H -0.27 -0.31 7.11 56.52 0.40 0.09 16 18 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 19 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 20 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 21 H 0.08 0.07 7.96 -51.93 -0.41 -0.35 16 22 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 0.11 6.25 -51.93 -0.32 -0.22 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 27 H 0.07 -0.10 6.54 -51.93 -0.34 -0.44 16 28 H 0.11 -0.21 7.96 -51.93 -0.41 -0.62 16 29 H 0.07 -0.13 6.11 -51.93 -0.32 -0.45 16 30 H 0.14 -0.24 4.88 -52.48 -0.26 -0.50 16 31 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16 32 H 0.16 -0.20 8.06 -52.49 -0.42 -0.63 16 33 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 34 H 0.38 -1.27 8.74 45.56 0.40 -0.87 16 LS Contribution 277.73 15.07 4.19 4.19 Total: 0.00 -5.85 277.73 -6.06 -11.91 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: -4.20 Total: -9.13 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 1.58 Total: 3.56 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -0.93 Total: -2.02 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -6.61 Total: -6.82 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -5.85 -6.06 -11.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_3095236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.655 kcal (2) G-P(sol) polarization free energy of solvation -5.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds