Wall clock time and date at job start Mon Mar 8 2021 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86298 * 109.47068 * 2 1 4 4 C 1.86301 * 109.47077 * 240.00222 * 2 1 3 5 5 C 1.86299 * 109.47170 * 120.00124 * 2 1 3 6 6 O 1.42900 * 109.47241 * 66.09386 * 5 2 1 7 7 C 1.35909 * 116.99988 * 77.80692 * 6 5 2 8 8 C 1.39101 * 120.47704 * 6.21693 * 7 6 5 9 9 C 1.38570 * 118.37742 * 179.97438 * 8 7 6 10 10 C 1.38215 * 119.22442 * 0.25337 * 9 8 7 11 11 N 1.31876 * 120.88301 * 359.47401 * 10 9 8 12 12 C 1.31805 * 121.78205 * 0.54141 * 11 10 9 13 13 C 1.50700 * 119.65866 * 179.70579 * 12 11 10 14 14 O 1.42905 * 109.47013 * 210.02209 * 13 12 11 15 15 Si 1.86302 * 109.47061 * 330.02012 * 13 12 11 16 16 H 1.48495 * 109.47251 * 60.00275 * 15 13 12 17 17 H 1.48504 * 109.47138 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47184 * 299.99968 * 15 13 12 19 19 H 1.09002 * 109.46948 * 300.00120 * 1 2 3 20 20 H 1.09001 * 109.47253 * 60.00031 * 1 2 3 21 21 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47338 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.47471 * 300.00405 * 3 2 1 24 24 H 1.09002 * 109.47334 * 60.00116 * 3 2 1 25 25 H 1.09003 * 109.46947 * 294.78619 * 4 2 1 26 26 H 1.09004 * 109.46814 * 54.78101 * 4 2 1 27 27 H 1.08997 * 109.47111 * 174.78378 * 4 2 1 28 28 H 1.09000 * 109.47102 * 306.08965 * 5 2 1 29 29 H 1.09000 * 109.47032 * 186.09144 * 5 2 1 30 30 H 1.08005 * 120.80911 * 359.95318 * 8 7 6 31 31 H 1.08002 * 120.38942 * 179.97438 * 9 8 7 32 32 H 1.08001 * 119.55524 * 179.74988 * 10 9 8 33 33 H 1.09001 * 109.47300 * 90.02332 * 13 12 11 34 34 H 0.96704 * 114.00161 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 8 2.1281 -2.2605 1.4518 7 6 2.8817 -3.0519 0.6438 8 6 4.0224 -2.5481 0.0274 9 6 4.7587 -3.3933 -0.7871 10 6 4.3364 -4.6975 -0.9635 11 7 3.2526 -5.1455 -0.3603 12 6 2.5245 -4.3742 0.4221 13 6 1.2911 -4.9341 1.0825 14 8 0.3333 -3.8896 1.2663 15 14 0.5591 -6.2652 0.0039 16 1 1.5543 -7.3506 -0.1870 17 1 -0.6567 -6.8165 0.6544 18 1 0.1958 -5.6889 -1.3156 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.5740 1.7565 -0.0005 23 1 2.1206 2.2704 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1989 -1.9293 -1.4757 26 1 2.0463 -0.4211 -2.4087 27 1 3.5700 -0.7980 -1.5691 28 1 2.0344 -0.4312 2.4077 29 1 3.5686 -0.7848 1.5773 30 1 4.3265 -1.5230 0.1798 31 1 5.6497 -3.0360 -1.2819 32 1 4.9040 -5.3597 -1.6004 33 1 1.5577 -5.3571 2.0511 34 1 -0.4881 -4.1786 1.6869 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_3095236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:57 Heat of formation + Delta-G solvation = -57.973178 kcal Electronic energy + Delta-G solvation = -16278.829755 eV Core-core repulsion = 13722.519454 eV Total energy + Delta-G solvation = -2556.310301 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76347 -38.99069 -37.60917 -33.58377 -31.87979 -29.67627 -28.39768 -28.36060 -27.78312 -27.21352 -23.70934 -22.92901 -19.02747 -18.65401 -17.68557 -17.22783 -16.72102 -16.09845 -15.34492 -15.10386 -14.94503 -14.74421 -14.31553 -14.05452 -13.80945 -13.74221 -13.36930 -13.25759 -13.22479 -13.16307 -12.98884 -12.72263 -12.33586 -12.09991 -11.85904 -10.97327 -10.83827 -10.82234 -10.76626 -10.49556 -10.08667 -8.99293 0.07322 0.29648 1.23575 1.48760 1.58393 1.60124 1.82974 1.83692 2.04640 2.49246 2.59310 2.76702 3.02765 3.61450 3.88286 4.06533 4.08679 4.29881 4.34297 4.46600 4.69854 4.71065 4.72941 4.78074 4.80287 4.83275 4.84710 4.89117 5.07948 5.13732 5.50500 5.51781 5.59844 5.63770 6.35675 6.88926 6.94274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.053 2.947 3 C -0.452 4.452 4 C -0.464 4.464 5 C -0.268 4.268 6 O -0.269 6.269 7 C 0.094 3.906 8 C -0.168 4.168 9 C -0.127 4.127 10 C 0.048 3.952 11 N -0.477 5.477 12 C 0.068 3.932 13 C -0.063 4.063 14 O -0.544 6.544 15 Si 1.005 2.995 16 H -0.266 1.266 17 H -0.253 1.253 18 H -0.289 1.289 19 H 0.072 0.928 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 3.396 0.801 3.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.245 2.755 3 C -0.561 4.561 4 C -0.570 4.570 5 C -0.388 4.388 6 O -0.180 6.180 7 C 0.044 3.956 8 C -0.195 4.195 9 C -0.146 4.146 10 C -0.109 4.109 11 N -0.189 5.189 12 C -0.070 4.070 13 C -0.174 4.174 14 O -0.351 6.351 15 Si 0.830 3.170 16 H -0.190 1.190 17 H -0.177 1.177 18 H -0.215 1.215 19 H 0.091 0.909 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.184 0.816 31 H 0.187 0.813 32 H 0.197 0.803 33 H 0.111 0.889 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.449 2.183 0.065 2.621 hybrid contribution 0.161 0.818 0.510 0.977 sum 1.610 3.001 0.575 3.453 Atomic orbital electron populations 1.26246 1.22023 1.04167 1.04381 0.78869 0.66543 0.65926 0.64157 1.26106 1.06899 1.17919 1.05146 1.26638 1.06964 1.07099 1.16270 1.28518 1.06411 0.84886 1.18971 1.86263 1.51825 1.19668 1.60223 1.19878 0.91407 0.91897 0.92369 1.22120 0.94878 1.02828 0.99630 1.22331 1.00942 0.93864 0.97472 1.22999 0.93380 0.95598 0.98940 1.67067 1.07452 1.37197 1.07210 1.20194 0.97736 0.89770 0.99340 1.24321 0.89850 0.98017 1.05235 1.86489 1.29404 1.34669 1.84555 0.84861 0.78328 0.76349 0.77510 1.19020 1.17682 1.21452 0.90875 0.91412 0.91919 0.90251 0.90774 0.90496 0.93178 0.91140 0.89866 0.86196 0.90062 0.81595 0.81316 0.80272 0.88921 0.75368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.06 8.65 113.37 0.98 1.04 16 2 Si 1.05 -4.69 11.70 68.60 0.80 -3.89 16 3 C -0.45 2.55 8.65 113.37 0.98 3.53 16 4 C -0.46 0.46 7.03 113.37 0.80 1.26 16 5 C -0.27 0.64 5.31 113.37 0.60 1.24 16 6 O -0.27 -1.25 7.53 -70.68 -0.53 -1.79 16 7 C 0.09 0.53 5.03 22.60 0.11 0.64 16 8 C -0.17 -0.12 5.73 22.56 0.13 0.01 16 9 C -0.13 0.08 10.11 22.34 0.23 0.31 16 10 C 0.05 0.14 11.18 84.68 0.95 1.09 16 11 N -0.48 -4.08 8.37 -183.50 -1.54 -5.61 16 12 C 0.07 0.55 6.12 42.69 0.26 0.81 16 13 C -0.06 -0.29 2.91 71.24 0.21 -0.08 16 14 O -0.54 -1.68 10.61 -127.14 -1.35 -3.03 16 15 Si 1.00 5.27 27.17 68.60 1.86 7.14 16 16 H -0.27 -2.27 7.11 99.48 0.71 -1.57 16 17 H -0.25 -0.66 7.11 99.48 0.71 0.05 16 18 H -0.29 -2.97 7.11 99.48 0.71 -2.26 16 19 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 20 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 21 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 22 H 0.08 -0.56 7.96 -2.39 -0.02 -0.57 16 23 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 24 H 0.08 -0.47 7.96 -2.39 -0.02 -0.48 16 25 H 0.05 0.20 6.25 -2.39 -0.01 0.19 16 26 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 27 H 0.08 -0.31 6.54 -2.39 -0.02 -0.33 16 28 H 0.12 -0.56 7.96 -2.39 -0.02 -0.58 16 29 H 0.08 -0.44 6.11 -2.39 -0.01 -0.45 16 30 H 0.17 -0.85 4.88 -2.91 -0.01 -0.86 16 31 H 0.17 -1.25 8.06 -2.91 -0.02 -1.27 16 32 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 33 H 0.09 0.11 7.96 -2.39 -0.02 0.09 16 34 H 0.40 -2.38 8.74 -74.05 -0.65 -3.03 16 Total: 0.00 -14.98 277.73 5.69 -9.29 By element: Atomic # 1 Polarization: -13.16 SS G_CDS: 1.20 Total: -11.96 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.24 Total: 9.85 kcal Atomic # 7 Polarization: -4.08 SS G_CDS: -1.54 Total: -5.61 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -1.88 Total: -4.81 kcal Atomic # 14 Polarization: 0.58 SS G_CDS: 2.67 Total: 3.25 kcal Total: -14.98 5.69 -9.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_3095236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.685 kcal (2) G-P(sol) polarization free energy of solvation -14.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds