Wall clock time and date at job start Mon Mar 8 2021 14:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.47421 * 2 1 4 4 C 1.86303 * 109.46733 * 240.00039 * 2 1 3 5 5 C 1.86794 * 109.47196 * 120.00504 * 2 1 3 6 6 C 1.38236 * 120.00575 * 89.99472 * 5 2 1 7 7 C 1.38229 * 120.00286 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00110 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99966 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46760 * 90.00441 * 9 8 7 11 11 C 1.35913 * 117.00171 * 179.97438 * 10 9 8 12 12 C 1.39098 * 120.47099 * 0.21884 * 11 10 9 13 13 C 1.38580 * 118.37202 * 180.26653 * 12 11 10 14 14 C 1.38212 * 119.22339 * 359.47195 * 13 12 11 15 15 N 1.31874 * 120.88657 * 0.30410 * 14 13 12 16 16 C 1.31817 * 121.78459 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.65837 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46793 * 209.99711 * 17 16 15 19 19 Si 1.86298 * 109.47316 * 329.99964 * 17 16 15 20 20 H 1.48500 * 109.47065 * 60.00180 * 19 17 16 21 21 H 1.48499 * 109.47051 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47131 * 300.00195 * 19 17 16 23 23 C 1.38231 * 119.99927 * 0.25492 * 8 7 6 24 24 C 1.38233 * 120.00227 * 359.49318 * 23 8 7 25 25 H 1.09006 * 109.46992 * 300.00066 * 1 2 3 26 26 H 1.08999 * 109.47255 * 59.99286 * 1 2 3 27 27 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47352 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47034 * 300.00291 * 3 2 1 30 30 H 1.08998 * 109.46786 * 60.00000 * 3 2 1 31 31 H 1.08996 * 109.47429 * 300.00003 * 4 2 1 32 32 H 1.09005 * 109.47360 * 60.00429 * 4 2 1 33 33 H 1.09001 * 109.46753 * 180.02562 * 4 2 1 34 34 H 1.07997 * 119.99436 * 0.02562 * 6 5 2 35 35 H 1.08003 * 119.99711 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47383 * 330.00374 * 9 8 7 37 37 H 1.08993 * 109.47371 * 209.99841 * 9 8 7 38 38 H 1.07995 * 120.81758 * 0.03480 * 12 11 10 39 39 H 1.08002 * 120.39109 * 179.75661 * 13 12 11 40 40 H 1.08000 * 119.55801 * 180.28281 * 14 13 12 41 41 H 1.08996 * 109.46929 * 90.00428 * 17 16 15 42 42 H 0.96701 * 113.99540 * 60.00167 * 18 17 16 43 43 H 1.08007 * 120.00024 * 179.72498 * 23 8 7 44 44 H 1.07997 * 120.00703 * 180.23127 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7160 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4058 -2.1843 3.7829 9 6 3.9070 -2.8950 5.0137 10 8 5.3360 -2.8950 5.0148 11 6 5.9522 -3.5002 6.0642 12 6 5.2035 -4.0904 7.0771 13 6 5.8766 -4.6905 8.1294 14 6 7.2587 -4.6928 8.1326 15 7 7.9389 -4.1283 7.1540 16 6 7.3371 -3.5423 6.1381 17 6 8.1618 -2.9115 5.0458 18 8 7.4455 -1.8100 4.4840 19 14 9.7744 -2.3065 5.7558 20 1 10.5187 -3.4512 6.3396 21 1 10.5867 -1.6843 4.6796 22 1 9.5028 -1.3010 6.8144 23 6 3.1699 -0.8228 3.8188 24 6 2.7146 -0.1700 2.6886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5741 1.7564 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1208 2.2702 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1206 -0.3644 -2.4112 33 1 3.5739 -0.8787 -1.5210 34 1 2.5363 -2.7986 0.5822 35 1 3.3558 -3.9597 2.5930 36 1 3.5437 -3.9227 5.0132 37 1 3.5431 -2.3814 5.9034 38 1 4.1241 -4.0779 7.0462 39 1 5.3276 -5.1549 8.9352 40 1 7.7888 -5.1630 8.9477 41 1 8.3610 -3.6495 4.2688 42 1 7.2335 -1.1132 5.1201 43 1 3.3450 -0.2682 4.7290 44 1 2.5339 0.8944 2.7155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10177732_9276060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:05:27 Heat of formation + Delta-G solvation = -54.790914 kcal Electronic energy + Delta-G solvation = -23777.675662 eV Core-core repulsion = 20397.523555 eV Total energy + Delta-G solvation = -3380.152108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84611 -40.21873 -38.86582 -37.60253 -33.45745 -33.23291 -31.87005 -31.38922 -29.57461 -28.43545 -28.41582 -27.47542 -27.25314 -24.06933 -23.47295 -23.24928 -21.90328 -19.33644 -18.47725 -18.00057 -17.38662 -17.17146 -16.78300 -16.19876 -15.98649 -15.52741 -15.35533 -15.23409 -14.56298 -14.40553 -14.35580 -14.22585 -14.18006 -14.11014 -13.85031 -13.83905 -13.49507 -13.26049 -13.25522 -13.24327 -13.09842 -12.55849 -12.45110 -12.24366 -11.93277 -11.87448 -11.70736 -11.05443 -10.98563 -10.90000 -10.82633 -10.67692 -10.19971 -9.76008 -9.65394 -9.27432 0.01164 0.18428 0.22056 0.56807 1.36062 1.68871 1.70943 1.80610 1.85268 1.88451 2.17748 2.24325 2.54898 2.72618 3.03763 3.19601 3.41296 3.61395 3.76501 3.80579 3.86608 4.00386 4.08092 4.20302 4.20878 4.30661 4.46285 4.51294 4.67919 4.70345 4.71923 4.74231 4.75145 4.76129 4.76873 4.77912 4.97016 5.01678 5.02861 5.16411 5.39277 5.41490 5.46547 5.51179 5.53480 5.63015 5.63787 6.12527 6.22697 6.63449 6.93400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.084 4.084 9 C 0.094 3.906 10 O -0.273 6.273 11 C 0.101 3.899 12 C -0.169 4.169 13 C -0.128 4.128 14 C 0.064 3.936 15 N -0.447 5.447 16 C 0.064 3.936 17 C -0.067 4.067 18 O -0.521 6.521 19 Si 0.981 3.019 20 H -0.243 1.243 21 H -0.262 1.262 22 H -0.261 1.261 23 C -0.104 4.104 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.123 0.877 42 H 0.371 0.629 43 H 0.120 0.880 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 0.168 0.779 3.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.084 4.084 9 C 0.019 3.981 10 O -0.184 6.184 11 C 0.052 3.948 12 C -0.196 4.196 13 C -0.148 4.148 14 C -0.093 4.093 15 N -0.158 5.158 16 C -0.076 4.076 17 C -0.177 4.177 18 O -0.323 6.323 19 Si 0.802 3.198 20 H -0.166 1.166 21 H -0.186 1.186 22 H -0.185 1.185 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.141 0.859 42 H 0.218 0.782 43 H 0.138 0.862 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.685 0.160 0.469 1.757 hybrid contribution -1.708 -0.270 0.814 1.911 sum -3.394 -0.110 1.283 3.630 Atomic orbital electron populations 1.26125 1.20470 1.04554 1.04488 0.78190 0.66791 0.66177 0.63761 1.26132 1.06561 1.18507 1.04532 1.26137 1.06562 1.08015 1.15051 1.27459 1.03077 0.99493 1.10183 1.21060 0.97497 0.94678 0.97661 1.21114 0.98729 0.99828 0.92619 1.19353 1.00670 0.94139 0.94239 1.21705 0.79382 1.00246 0.96762 1.86463 1.19969 1.71627 1.40380 1.19824 0.92698 0.93991 0.88242 1.21800 1.01000 1.01489 0.95296 1.22044 0.95698 0.98532 0.98482 1.22622 0.91528 0.98317 0.96818 1.67234 1.40035 1.07681 1.00832 1.21406 0.89084 1.00558 0.96551 1.24865 1.03503 0.91922 0.97449 1.86590 1.77716 1.30164 1.37867 0.85178 0.75406 0.80666 0.78567 1.16630 1.18607 1.18466 1.21098 0.98835 0.93476 0.98852 1.21061 0.97539 0.99680 0.92621 0.91185 0.91024 0.91187 0.90970 0.90961 0.91194 0.91198 0.90960 0.90978 0.85965 0.86290 0.91257 0.91187 0.84133 0.84199 0.82044 0.85928 0.78242 0.86243 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.69 8.65 101.05 0.87 1.57 16 2 Si 1.06 -2.51 12.32 -169.99 -2.09 -4.60 16 3 C -0.45 0.73 8.53 101.05 0.86 1.59 16 4 C -0.45 0.69 8.53 101.05 0.86 1.55 16 5 C -0.36 0.01 4.59 -39.58 -0.18 -0.17 16 6 C -0.09 -0.05 9.29 -39.59 -0.37 -0.42 16 7 C -0.10 -0.13 9.70 -39.59 -0.38 -0.51 16 8 C -0.08 -0.10 5.51 -104.62 -0.58 -0.68 16 9 C 0.09 0.00 4.89 36.01 0.18 0.18 16 10 O -0.27 -0.56 7.86 -42.32 -0.33 -0.89 16 11 C 0.10 0.19 6.56 -39.07 -0.26 -0.06 16 12 C -0.17 -0.02 9.14 -39.14 -0.36 -0.38 16 13 C -0.13 0.06 10.11 -39.46 -0.40 -0.34 16 14 C 0.06 0.05 11.18 -17.54 -0.20 -0.15 16 15 N -0.45 -1.31 8.37 -9.35 -0.08 -1.39 16 16 C 0.06 0.17 6.09 -82.41 -0.50 -0.33 16 17 C -0.07 -0.13 2.92 36.01 0.11 -0.02 16 18 O -0.52 -1.18 10.64 -58.08 -0.62 -1.80 16 19 Si 0.98 1.85 27.17 -169.99 -4.62 -2.77 16 20 H -0.24 -0.74 7.11 56.52 0.40 -0.34 16 21 H -0.26 -0.69 7.11 56.52 0.40 -0.29 16 22 H -0.26 -0.68 7.11 56.52 0.40 -0.27 16 23 C -0.10 -0.09 9.70 -39.59 -0.38 -0.47 16 24 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 31 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.12 -0.16 7.43 -52.49 -0.39 -0.55 16 35 H 0.12 0.01 8.06 -52.48 -0.42 -0.41 16 36 H 0.07 -0.08 7.63 -51.93 -0.40 -0.47 16 37 H 0.07 -0.10 7.65 -51.93 -0.40 -0.50 16 38 H 0.14 -0.28 6.45 -52.49 -0.34 -0.62 16 39 H 0.14 -0.43 8.06 -52.49 -0.42 -0.85 16 40 H 0.16 -0.28 8.06 -52.49 -0.42 -0.71 16 41 H 0.12 0.16 7.96 -51.93 -0.41 -0.25 16 42 H 0.37 -0.14 8.70 45.56 0.40 0.25 16 43 H 0.12 -0.08 8.06 -52.48 -0.42 -0.50 16 44 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 LS Contribution 368.95 15.07 5.56 5.56 Total: 0.00 -6.31 368.95 -9.38 -15.69 By element: Atomic # 1 Polarization: -4.65 SS G_CDS: -6.11 Total: -10.75 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.09 Total: 0.95 kcal Atomic # 7 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Atomic # 8 Polarization: -1.74 SS G_CDS: -0.95 Total: -2.69 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: -6.71 Total: -7.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -6.31 -9.38 -15.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_9276060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.099 kcal (2) G-P(sol) polarization free energy of solvation -6.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds