Wall clock time and date at job start Mon Mar 8 2021 14:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.47421 * 2 1 4 4 C 1.86303 * 109.46733 * 240.00039 * 2 1 3 5 5 C 1.86794 * 109.47196 * 120.00504 * 2 1 3 6 6 C 1.38236 * 120.00575 * 89.99472 * 5 2 1 7 7 C 1.38229 * 120.00286 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00110 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99966 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46760 * 90.00441 * 9 8 7 11 11 C 1.35913 * 117.00171 * 179.97438 * 10 9 8 12 12 C 1.39098 * 120.47099 * 0.21884 * 11 10 9 13 13 C 1.38580 * 118.37202 * 180.26653 * 12 11 10 14 14 C 1.38212 * 119.22339 * 359.47195 * 13 12 11 15 15 N 1.31874 * 120.88657 * 0.30410 * 14 13 12 16 16 C 1.31817 * 121.78459 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.65837 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46793 * 209.99711 * 17 16 15 19 19 Si 1.86298 * 109.47316 * 329.99964 * 17 16 15 20 20 H 1.48500 * 109.47065 * 60.00180 * 19 17 16 21 21 H 1.48499 * 109.47051 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47131 * 300.00195 * 19 17 16 23 23 C 1.38231 * 119.99927 * 0.25492 * 8 7 6 24 24 C 1.38233 * 120.00227 * 359.49318 * 23 8 7 25 25 H 1.09006 * 109.46992 * 300.00066 * 1 2 3 26 26 H 1.08999 * 109.47255 * 59.99286 * 1 2 3 27 27 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47352 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47034 * 300.00291 * 3 2 1 30 30 H 1.08998 * 109.46786 * 60.00000 * 3 2 1 31 31 H 1.08996 * 109.47429 * 300.00003 * 4 2 1 32 32 H 1.09005 * 109.47360 * 60.00429 * 4 2 1 33 33 H 1.09001 * 109.46753 * 180.02562 * 4 2 1 34 34 H 1.07997 * 119.99436 * 0.02562 * 6 5 2 35 35 H 1.08003 * 119.99711 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47383 * 330.00374 * 9 8 7 37 37 H 1.08993 * 109.47371 * 209.99841 * 9 8 7 38 38 H 1.07995 * 120.81758 * 0.03480 * 12 11 10 39 39 H 1.08002 * 120.39109 * 179.75661 * 13 12 11 40 40 H 1.08000 * 119.55801 * 180.28281 * 14 13 12 41 41 H 1.08996 * 109.46929 * 90.00428 * 17 16 15 42 42 H 0.96701 * 113.99540 * 60.00167 * 18 17 16 43 43 H 1.08007 * 120.00024 * 179.72498 * 23 8 7 44 44 H 1.07997 * 120.00703 * 180.23127 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7160 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4058 -2.1843 3.7829 9 6 3.9070 -2.8950 5.0137 10 8 5.3360 -2.8950 5.0148 11 6 5.9522 -3.5002 6.0642 12 6 5.2035 -4.0904 7.0771 13 6 5.8766 -4.6905 8.1294 14 6 7.2587 -4.6928 8.1326 15 7 7.9389 -4.1283 7.1540 16 6 7.3371 -3.5423 6.1381 17 6 8.1618 -2.9115 5.0458 18 8 7.4455 -1.8100 4.4840 19 14 9.7744 -2.3065 5.7558 20 1 10.5187 -3.4512 6.3396 21 1 10.5867 -1.6843 4.6796 22 1 9.5028 -1.3010 6.8144 23 6 3.1699 -0.8228 3.8188 24 6 2.7146 -0.1700 2.6886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5741 1.7564 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1208 2.2702 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1206 -0.3644 -2.4112 33 1 3.5739 -0.8787 -1.5210 34 1 2.5363 -2.7986 0.5822 35 1 3.3558 -3.9597 2.5930 36 1 3.5437 -3.9227 5.0132 37 1 3.5431 -2.3814 5.9034 38 1 4.1241 -4.0779 7.0462 39 1 5.3276 -5.1549 8.9352 40 1 7.7888 -5.1630 8.9477 41 1 8.3610 -3.6495 4.2688 42 1 7.2335 -1.1132 5.1201 43 1 3.3450 -0.2682 4.7290 44 1 2.5339 0.8944 2.7155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10177732_9276060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:05:27 Heat of formation + Delta-G solvation = -45.377554 kcal Electronic energy + Delta-G solvation = -23777.267468 eV Core-core repulsion = 20397.523555 eV Total energy + Delta-G solvation = -3379.743914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87297 -40.20623 -38.88687 -37.72328 -33.47286 -33.21743 -31.85080 -31.42123 -29.43395 -28.29086 -28.26606 -27.45400 -27.31819 -24.08146 -23.45953 -23.29252 -21.89524 -19.36080 -18.52729 -18.04456 -17.39538 -17.18881 -16.81764 -16.27347 -15.96283 -15.57732 -15.39629 -15.23689 -14.56824 -14.48512 -14.33796 -14.25096 -14.05068 -14.01377 -13.76568 -13.72226 -13.44785 -13.22108 -13.13007 -13.11285 -12.96359 -12.57816 -12.43383 -12.32422 -12.14959 -11.87851 -11.83161 -11.04443 -10.92381 -10.75671 -10.75376 -10.70661 -10.29564 -9.77115 -9.63857 -9.32144 -0.00878 0.19353 0.20122 0.55680 1.21460 1.49252 1.61446 1.85150 1.97134 2.00423 2.02873 2.29261 2.67720 2.69296 3.04078 3.16996 3.36731 3.64716 3.80545 3.82764 3.93707 4.04680 4.12922 4.24795 4.25832 4.34949 4.46683 4.55276 4.66644 4.73818 4.84913 4.85354 4.89022 4.89603 4.90326 4.91181 4.98730 5.03929 5.05771 5.18720 5.41960 5.44873 5.58996 5.59594 5.63109 5.68176 5.71516 6.15275 6.22603 6.60998 6.89547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.464 4.464 5 C -0.374 4.374 6 C -0.105 4.105 7 C -0.123 4.123 8 C -0.098 4.098 9 C 0.093 3.907 10 O -0.288 6.288 11 C 0.090 3.910 12 C -0.170 4.170 13 C -0.122 4.122 14 C 0.053 3.947 15 N -0.472 5.472 16 C 0.042 3.958 17 C -0.064 4.064 18 O -0.532 6.532 19 Si 1.016 2.984 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.118 4.118 24 C -0.104 4.104 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.183 0.817 41 H 0.123 0.877 42 H 0.381 0.619 43 H 0.130 0.870 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 0.141 1.212 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.312 2.688 3 C -0.569 4.569 4 C -0.571 4.571 5 C -0.413 4.413 6 C -0.123 4.123 7 C -0.141 4.141 8 C -0.098 4.098 9 C 0.019 3.981 10 O -0.200 6.200 11 C 0.042 3.958 12 C -0.197 4.197 13 C -0.141 4.141 14 C -0.104 4.104 15 N -0.184 5.184 16 C -0.096 4.096 17 C -0.175 4.175 18 O -0.336 6.336 19 Si 0.840 3.160 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.136 4.136 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.140 0.860 42 H 0.228 0.772 43 H 0.148 0.852 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.757 0.134 0.907 2.906 hybrid contribution -1.398 -0.279 0.712 1.594 sum -4.155 -0.146 1.620 4.462 Atomic orbital electron populations 1.26256 1.21320 1.04487 1.04632 0.77204 0.65346 0.64643 0.61645 1.26273 1.06338 1.19389 1.04904 1.26299 1.06311 1.08500 1.15948 1.28010 1.02583 0.99531 1.11215 1.21352 0.97549 0.95275 0.98098 1.21341 0.99308 1.00324 0.93140 1.19558 1.00946 0.94525 0.94743 1.21807 0.78526 1.00895 0.96899 1.86430 1.20978 1.71852 1.40735 1.19909 0.92648 0.94505 0.88780 1.22111 1.02079 1.00690 0.94770 1.22384 0.95348 0.97537 0.98818 1.23096 0.92511 0.98022 0.96811 1.67206 1.41014 1.08609 1.01586 1.21435 0.89714 1.01586 0.96906 1.24827 1.03335 0.91862 0.97483 1.86552 1.77804 1.30625 1.38646 0.84666 0.74821 0.79196 0.77342 1.18530 1.19847 1.19566 1.21351 0.98993 0.93645 0.99611 1.21383 0.97409 1.00676 0.92672 0.91268 0.90661 0.91379 0.91455 0.90647 0.90811 0.90975 0.90635 0.91517 0.84622 0.85880 0.90339 0.89731 0.82049 0.81244 0.80050 0.85970 0.77171 0.85225 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.64 8.65 113.37 0.98 2.62 16 2 Si 1.12 -5.70 12.32 68.60 0.85 -4.85 16 3 C -0.46 1.68 8.53 113.37 0.97 2.65 16 4 C -0.46 1.49 8.53 113.37 0.97 2.46 16 5 C -0.37 -0.02 4.59 22.27 0.10 0.08 16 6 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 7 C -0.12 -0.39 9.70 22.27 0.22 -0.18 16 8 C -0.10 -0.28 5.51 -19.87 -0.11 -0.39 16 9 C 0.09 0.00 4.89 71.24 0.35 0.35 16 10 O -0.29 -1.34 7.86 -70.73 -0.56 -1.90 16 11 C 0.09 0.37 6.56 22.60 0.15 0.52 16 12 C -0.17 0.10 9.14 22.56 0.21 0.31 16 13 C -0.12 0.28 10.11 22.35 0.23 0.51 16 14 C 0.05 0.06 11.18 84.68 0.95 1.00 16 15 N -0.47 -3.06 8.37 -183.50 -1.54 -4.60 16 16 C 0.04 0.26 6.09 42.68 0.26 0.52 16 17 C -0.06 -0.33 2.92 71.24 0.21 -0.12 16 18 O -0.53 -3.07 10.64 -127.13 -1.35 -4.42 16 19 Si 1.02 5.24 27.17 68.60 1.86 7.10 16 20 H -0.26 -2.03 7.11 99.48 0.71 -1.32 16 21 H -0.27 -1.79 7.11 99.48 0.71 -1.09 16 22 H -0.27 -1.75 7.11 99.48 0.71 -1.04 16 23 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 24 C -0.10 -0.08 9.29 22.27 0.21 0.12 16 25 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 30 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 31 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 32 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 33 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.14 -0.31 7.43 -2.91 -0.02 -0.33 16 35 H 0.12 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.08 -0.19 7.63 -2.39 -0.02 -0.20 16 37 H 0.08 -0.29 7.65 -2.39 -0.02 -0.31 16 38 H 0.16 -0.90 6.45 -2.91 -0.02 -0.92 16 39 H 0.17 -1.48 8.06 -2.91 -0.02 -1.50 16 40 H 0.18 -0.78 8.06 -2.91 -0.02 -0.81 16 41 H 0.12 0.52 7.96 -2.39 -0.02 0.50 16 42 H 0.38 0.19 8.70 -74.06 -0.64 -0.45 16 43 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.14 -0.48 7.43 -2.91 -0.02 -0.50 16 Total: 0.00 -15.04 368.95 6.46 -8.58 By element: Atomic # 1 Polarization: -11.47 SS G_CDS: 1.10 Total: -10.38 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.10 Total: 10.46 kcal Atomic # 7 Polarization: -3.06 SS G_CDS: -1.54 Total: -4.60 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -1.91 Total: -6.31 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.71 Total: 2.25 kcal Total: -15.04 6.46 -8.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10177732_9276060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.799 kcal (2) G-P(sol) polarization free energy of solvation -15.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds