Wall clock time and date at job start Mon Mar 8 2021 15:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47030 * 2 1 4 4 C 1.53003 * 109.46896 * 240.00185 * 2 1 3 5 5 Si 1.86301 * 109.47342 * 120.00142 * 2 1 3 6 6 C 1.86298 * 109.47011 * 300.00298 * 5 2 1 7 7 C 1.86294 * 109.47106 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.47067 * 59.99873 * 5 2 1 9 9 C 1.42893 * 114.00262 * 180.02562 * 8 5 2 10 10 C 1.52993 * 109.47409 * 180.02562 * 9 8 5 11 11 O 1.42905 * 109.47629 * 65.00127 * 10 9 8 12 12 C 1.35798 * 117.00680 * 180.02562 * 11 10 9 13 13 C 1.36623 * 120.23072 * 89.99305 * 12 11 10 14 14 C 1.50699 * 119.53604 * 359.97438 * 13 12 11 15 15 O 1.42903 * 109.47294 * 74.99916 * 14 13 12 16 16 Si 1.86301 * 109.47146 * 194.99873 * 14 13 12 17 17 H 1.48506 * 109.47302 * 299.99754 * 16 14 13 18 18 H 1.48503 * 109.47334 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47376 * 59.99883 * 16 14 13 20 20 C 1.39240 * 120.92974 * 180.25829 * 13 12 11 21 21 C 1.36135 * 121.06094 * 359.41369 * 20 13 12 22 22 C 1.40572 * 119.76755 * 0.60079 * 21 20 13 23 23 C 1.40509 * 121.26575 * 179.70547 * 22 21 20 24 24 C 1.36146 * 119.64344 * 179.97438 * 23 22 21 25 25 C 1.39312 * 120.97741 * 0.02562 * 24 23 22 26 26 C 1.36177 * 120.96938 * 359.93239 * 25 24 23 27 27 C 1.40372 * 119.66436 * 0.08769 * 26 25 24 28 28 H 1.08997 * 109.47038 * 299.99538 * 1 2 3 29 29 H 1.08996 * 109.47254 * 60.00029 * 1 2 3 30 30 H 1.09008 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47117 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47078 * 300.00078 * 3 2 1 33 33 H 1.08997 * 109.46833 * 60.00336 * 3 2 1 34 34 H 1.08998 * 109.47383 * 300.00044 * 4 2 1 35 35 H 1.09006 * 109.47241 * 59.99808 * 4 2 1 36 36 H 1.09000 * 109.47116 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.47092 * 180.02562 * 6 5 2 38 38 H 1.09005 * 109.46826 * 299.99289 * 6 5 2 39 39 H 1.08991 * 109.47530 * 59.99650 * 6 5 2 40 40 H 1.08997 * 109.47390 * 300.00391 * 7 5 2 41 41 H 1.08998 * 109.47024 * 60.00450 * 7 5 2 42 42 H 1.09006 * 109.47097 * 179.97438 * 7 5 2 43 43 H 1.08997 * 109.47165 * 59.99983 * 9 8 5 44 44 H 1.09006 * 109.47096 * 300.00101 * 9 8 5 45 45 H 1.09000 * 109.47260 * 304.99661 * 10 9 8 46 46 H 1.09007 * 109.47467 * 184.99937 * 10 9 8 47 47 H 1.09002 * 109.47485 * 314.99825 * 14 13 12 48 48 H 0.96699 * 113.99816 * 179.97438 * 15 14 13 49 49 H 1.07998 * 119.46799 * 179.73001 * 20 13 12 50 50 H 1.08005 * 120.11824 * 180.26255 * 21 20 13 51 51 H 1.07997 * 120.17700 * 0.02562 * 23 22 21 52 52 H 1.07998 * 119.50564 * 180.02562 * 24 23 22 53 53 H 1.07989 * 119.51267 * 179.97438 * 25 24 23 54 54 H 1.07995 * 120.16270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6518 10 6 1.4638 -4.5994 2.5468 11 8 2.0331 -5.2563 1.4125 12 6 1.6341 -6.5323 1.1743 13 6 0.5506 -6.7771 0.3790 14 6 -0.1990 -5.6212 -0.2317 15 8 0.5601 -5.0799 -1.3147 16 14 -1.8475 -6.2151 -0.8647 17 1 -1.6339 -7.2651 -1.8930 18 1 -2.5865 -5.0759 -1.4659 19 1 -2.6364 -6.7776 0.2606 20 6 0.1257 -8.0794 0.1293 21 6 0.7834 -9.1467 0.6600 22 6 1.9027 -8.9374 1.4843 23 6 2.6011 -10.0156 2.0534 24 6 3.6813 -9.7749 2.8464 25 6 4.1061 -8.4733 3.1037 26 6 3.4537 -7.4045 2.5683 27 6 2.3355 -7.6138 1.7460 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 1.8938 -0.5137 3.9322 38 1 1.8934 1.0276 3.0423 39 1 0.4401 -0.0001 3.0423 40 1 4.3770 -1.3929 0.6306 41 1 4.3777 0.1486 1.5205 42 1 4.3774 -1.3924 2.4109 43 1 1.6638 -2.7114 3.5650 44 1 3.1175 -3.2253 2.6757 45 1 0.3808 -4.5517 2.4334 46 1 1.7102 -5.1566 3.4508 47 1 -0.3559 -4.8505 0.5229 48 1 0.1368 -4.3308 -1.7560 49 1 -0.7364 -8.2456 -0.4995 50 1 0.4431 -10.1506 0.4530 51 1 2.2833 -11.0299 1.8621 52 1 4.2167 -10.6053 3.2823 53 1 4.9656 -8.3095 3.7365 54 1 3.7945 -6.4010 2.7761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_10264010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:52:13 Heat of formation + Delta-G solvation = -115.378139 kcal Electronic energy + Delta-G solvation = -31906.093374 eV Core-core repulsion = 27931.671009 eV Total energy + Delta-G solvation = -3974.422365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.187 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83078 -39.49782 -38.28764 -37.47728 -36.79809 -36.70693 -33.10207 -31.97858 -30.93236 -29.70505 -29.26205 -29.03129 -27.81112 -27.34308 -26.69507 -24.46129 -23.72085 -22.85338 -22.58396 -20.38121 -19.21711 -18.57710 -18.43363 -17.88566 -17.48252 -16.99774 -16.43956 -16.02396 -15.87183 -15.79698 -15.67585 -15.21476 -14.97051 -14.80732 -14.75804 -14.63011 -14.47712 -14.25447 -14.05809 -13.99732 -13.79047 -13.50926 -13.35147 -13.27389 -13.16158 -12.91224 -12.90456 -12.82121 -12.68864 -12.36859 -12.30304 -12.09571 -12.03026 -11.94088 -11.78688 -11.70448 -11.62245 -11.50593 -11.20134 -10.92290 -10.74628 -10.28463 -10.17059 -10.01693 -9.63561 -8.76431 -0.54020 -0.08889 0.93536 1.14197 1.43190 1.46840 1.55644 1.82766 1.85297 1.87796 2.16454 2.49946 2.58784 3.04589 3.49024 3.66505 3.87695 3.88556 4.04042 4.05635 4.09781 4.15346 4.16490 4.18959 4.28615 4.32832 4.37771 4.39881 4.44535 4.50744 4.55526 4.60852 4.74568 4.77282 4.80567 4.81239 4.83577 4.84928 4.87831 4.93205 5.03826 5.06856 5.12902 5.13360 5.13569 5.16128 5.23824 5.36684 5.37601 5.45278 5.46254 5.53906 5.56583 5.58561 5.60799 5.66361 5.67361 5.98372 6.55378 6.85292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.317 2.683 6 C -0.516 4.516 7 C -0.521 4.521 8 O -0.631 6.631 9 C 0.080 3.920 10 C 0.054 3.946 11 O -0.326 6.326 12 C 0.125 3.875 13 C -0.113 4.113 14 C -0.077 4.077 15 O -0.553 6.553 16 Si 0.972 3.028 17 H -0.260 1.260 18 H -0.253 1.253 19 H -0.252 1.252 20 C -0.126 4.126 21 C -0.105 4.105 22 C -0.058 4.058 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.090 4.090 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.391 0.609 49 H 0.136 0.864 50 H 0.158 0.842 51 H 0.152 0.848 52 H 0.148 0.852 53 H 0.145 0.855 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -0.263 4.167 4.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.446 2.554 6 C -0.618 4.618 7 C -0.622 4.622 8 O -0.590 6.590 9 C 0.005 3.995 10 C -0.020 4.020 11 O -0.244 6.244 12 C 0.081 3.919 13 C -0.113 4.113 14 C -0.186 4.186 15 O -0.361 6.361 16 Si 0.795 3.205 17 H -0.185 1.185 18 H -0.177 1.177 19 H -0.176 1.176 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.058 4.058 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.240 0.760 49 H 0.154 0.846 50 H 0.176 0.824 51 H 0.169 0.831 52 H 0.166 0.834 53 H 0.163 0.837 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.553 -1.079 3.792 4.237 hybrid contribution 0.327 1.090 -0.103 1.142 sum -1.227 0.011 3.689 3.887 Atomic orbital electron populations 1.21533 0.93942 1.01951 1.01846 1.25887 1.00624 1.02755 1.13031 1.21602 1.01069 0.94891 1.02232 1.21517 1.00586 1.00224 0.96908 0.76193 0.61989 0.52851 0.64345 1.27066 1.07042 1.09744 1.17909 1.27168 1.26204 1.04616 1.04188 1.85387 1.79195 1.46390 1.48038 1.22280 0.99669 0.89458 0.88101 1.23167 0.98774 0.92410 0.87613 1.86069 1.67050 1.22816 1.48417 1.18279 0.92834 0.84180 0.96642 1.19584 0.96743 0.94759 1.00234 1.24752 1.04139 0.97042 0.92714 1.86505 1.49305 1.52964 1.47346 0.85443 0.74230 0.80320 0.80554 1.18492 1.17736 1.17560 1.20865 1.01189 0.91658 1.00603 1.21300 0.94348 1.00277 0.96309 1.18304 0.96586 0.92593 0.98315 1.21358 0.95770 0.98798 0.97142 1.21274 0.96646 0.97724 0.97727 1.21227 1.00310 0.92478 0.99613 1.21099 0.94647 1.00427 0.96817 1.18612 0.97943 0.92888 0.99610 0.92037 0.93352 0.92204 0.92220 0.93141 0.91691 0.92265 0.93309 0.92917 0.90769 0.90503 0.90806 0.91894 0.90604 0.91157 0.88153 0.91210 0.91532 0.90301 0.90210 0.76035 0.84608 0.82449 0.83059 0.83426 0.83742 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 7.85 71.98 0.56 0.61 16 2 C -0.38 0.07 0.53 -10.79 -0.01 0.07 16 3 C -0.14 0.11 7.85 71.98 0.56 0.68 16 4 C -0.14 -0.24 7.85 71.98 0.56 0.32 16 5 Si 1.32 -2.70 8.45 68.60 0.58 -2.12 16 6 C -0.52 1.57 8.50 113.37 0.96 2.54 16 7 C -0.52 0.03 8.50 113.37 0.96 0.99 16 8 O -0.63 -0.59 8.52 -144.35 -1.23 -1.82 16 9 C 0.08 -0.15 5.50 71.98 0.40 0.25 16 10 C 0.05 0.05 6.17 71.98 0.44 0.49 16 11 O -0.33 -2.49 8.56 -86.65 -0.74 -3.23 16 12 C 0.12 1.09 5.67 22.57 0.13 1.21 16 13 C -0.11 -0.86 5.27 -20.00 -0.11 -0.96 16 14 C -0.08 -0.34 2.31 71.24 0.16 -0.17 16 15 O -0.55 -3.45 12.86 -148.98 -1.92 -5.37 16 16 Si 0.97 1.46 25.44 68.60 1.75 3.21 16 17 H -0.26 -0.90 6.72 99.48 0.67 -0.23 16 18 H -0.25 -0.25 7.11 99.48 0.71 0.46 16 19 H -0.25 -0.45 7.11 99.48 0.71 0.26 16 20 C -0.13 -0.67 8.56 22.02 0.19 -0.48 16 21 C -0.10 -0.38 9.77 22.35 0.22 -0.16 16 22 C -0.06 -0.32 5.74 -21.30 -0.12 -0.45 16 23 C -0.11 -0.17 9.77 22.34 0.22 0.05 16 24 C -0.12 -0.03 9.95 22.04 0.22 0.19 16 25 C -0.12 -0.15 9.95 22.05 0.22 0.07 16 26 C -0.11 -0.51 9.56 22.31 0.21 -0.30 16 27 C -0.09 -0.69 5.75 -21.23 -0.12 -0.81 16 28 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 29 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 -0.02 7.97 -2.38 -0.02 -0.04 16 31 H 0.06 -0.10 7.79 -2.39 -0.02 -0.11 16 32 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.19 16 34 H 0.06 0.16 7.97 -2.39 -0.02 0.14 16 35 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.05 0.09 7.79 -2.39 -0.02 0.08 16 37 H 0.07 -0.33 7.48 -2.38 -0.02 -0.35 16 38 H 0.08 -0.25 7.79 -2.38 -0.02 -0.27 16 39 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 40 H 0.06 0.15 7.79 -2.39 -0.02 0.13 16 41 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 42 H 0.07 -0.08 7.48 -2.38 -0.02 -0.10 16 43 H 0.10 -0.76 7.21 -2.39 -0.02 -0.78 16 44 H 0.07 -0.21 7.21 -2.38 -0.02 -0.23 16 45 H 0.07 0.01 7.03 -2.39 -0.02 -0.01 16 46 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 47 H 0.08 0.20 6.41 -2.39 -0.02 0.19 16 48 H 0.39 -0.84 8.74 -74.06 -0.65 -1.48 16 49 H 0.14 0.31 4.78 -2.91 -0.01 0.29 16 50 H 0.16 -0.39 8.06 -2.91 -0.02 -0.41 16 51 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 52 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 53 H 0.14 -0.50 8.06 -2.92 -0.02 -0.53 16 54 H 0.13 0.34 7.62 -2.91 -0.02 0.31 16 Total: 0.00 -15.02 426.85 5.05 -9.97 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: 0.94 Total: -4.77 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.68 Total: 4.13 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -3.89 Total: -10.42 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.33 Total: 1.08 kcal Total: -15.02 5.05 -9.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_10264010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.410 kcal (2) G-P(sol) polarization free energy of solvation -15.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds