Wall clock time and date at job start Mon Mar 8 2021 11:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.47034 * 2 1 4 4 C 1.50694 * 109.47356 * 119.99964 * 2 1 3 5 5 C 1.36630 * 119.53951 * 75.28885 * 4 2 1 6 6 O 1.35815 * 120.22655 * 359.96636 * 5 4 2 7 7 C 1.42900 * 116.99965 * 270.30208 * 6 5 4 8 8 C 1.53001 * 109.46859 * 179.97438 * 7 6 5 9 9 H 1.09006 * 112.84920 * 316.19772 * 8 7 6 10 10 C 1.53782 * 113.61414 * 87.50328 * 8 7 6 11 11 C 1.53784 * 87.08079 * 139.98054 * 10 8 7 12 12 H 1.09001 * 113.69050 * 89.12815 * 11 10 8 13 13 O 1.42892 * 113.61720 * 220.02122 * 11 10 8 14 14 C 1.53782 * 113.61393 * 185.00548 * 8 7 6 15 15 C 1.41002 * 119.54328 * 180.27322 * 5 4 2 16 16 C 1.40376 * 121.28812 * 179.67792 * 15 5 4 17 17 C 1.36169 * 119.66145 * 180.02562 * 16 15 5 18 18 C 1.39303 * 120.97533 * 359.97438 * 17 16 15 19 19 C 1.36143 * 120.97381 * 359.97438 * 18 17 16 20 20 C 1.40502 * 119.65034 * 0.03928 * 19 18 17 21 21 C 1.40567 * 121.27348 * 179.97438 * 20 19 18 22 22 C 1.36147 * 119.76731 * 180.02562 * 21 20 19 23 23 H 0.96701 * 114.00605 * 60.00112 * 1 2 3 24 24 H 1.09002 * 109.47313 * 240.00266 * 2 1 3 25 25 H 1.48503 * 109.99920 * 298.68009 * 3 2 1 26 26 H 1.48492 * 109.99955 * 60.00067 * 3 2 1 27 27 H 1.08994 * 109.47121 * 300.00158 * 7 6 5 28 28 H 1.09001 * 109.47144 * 60.00685 * 7 6 5 29 29 H 1.08998 * 113.61878 * 254.53176 * 10 8 7 30 30 H 1.09005 * 113.61142 * 25.43770 * 10 8 7 31 31 H 0.96699 * 113.99881 * 277.49978 * 13 11 10 32 32 H 1.08995 * 113.61071 * 334.56105 * 14 8 7 33 33 H 1.08994 * 113.61546 * 105.46960 * 14 8 7 34 34 H 1.08002 * 120.16786 * 359.97438 * 16 15 5 35 35 H 1.08008 * 119.50918 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.51596 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.17332 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.11976 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.46412 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8713 -2.0739 1.2927 6 8 1.3617 -2.7841 0.2532 7 6 -0.0436 -3.0428 0.2712 8 6 -0.4297 -3.8480 -0.9712 9 1 0.0416 -3.4753 -1.8806 10 6 -0.2973 -5.3688 -0.7853 11 6 -1.6064 -5.5010 -1.5813 12 1 -1.4580 -5.5818 -2.6581 13 8 -2.4911 -6.4982 -1.0668 14 6 -1.9441 -4.0761 -1.1112 15 6 2.3360 -2.7383 2.4463 16 6 2.2854 -4.1372 2.5521 17 6 2.7429 -4.7445 3.6817 18 6 3.2623 -3.9980 4.7369 19 6 3.3278 -2.6399 4.6688 20 6 2.8648 -1.9785 3.5190 21 6 2.9158 -0.5777 3.4125 22 6 2.4582 0.0315 2.2843 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5878 2.4586 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 -0.2969 -3.6110 1.1661 28 1 -0.5870 -2.0979 0.2746 29 1 0.5673 -5.7971 -1.2924 30 1 -0.3830 -5.6909 0.2526 31 1 -2.2838 -7.3964 -1.3589 32 1 -2.4798 -4.0449 -0.1626 33 1 -2.4089 -3.4609 -1.8815 34 1 1.8849 -4.7286 1.7420 35 1 2.7032 -5.8210 3.7603 36 1 3.6189 -4.5042 5.6218 37 1 3.7333 -2.0739 5.4945 38 1 3.3166 0.0131 4.2229 39 1 2.4993 1.1081 2.2079 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:39 Heat of formation + Delta-G solvation = -42.354533 kcal Electronic energy + Delta-G solvation = -22930.790359 eV Core-core repulsion = 19578.127974 eV Total energy + Delta-G solvation = -3352.662385 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81690 -40.44086 -39.13577 -38.03026 -36.85370 -35.97808 -33.01157 -31.94245 -30.33060 -28.85209 -26.78568 -26.60953 -24.37904 -23.48141 -22.86287 -22.49816 -20.57745 -19.00781 -18.65097 -18.47512 -18.41270 -17.60671 -16.84263 -16.50038 -16.20212 -16.05225 -15.60959 -15.30439 -15.07932 -14.82526 -14.68688 -14.12729 -14.03468 -13.97714 -13.71594 -13.46851 -13.31491 -12.84904 -12.58685 -12.48593 -12.22642 -12.05829 -12.00114 -11.80719 -11.63745 -11.33162 -10.83552 -10.68380 -10.62314 -10.41646 -9.57340 -8.71690 -4.97249 -0.49044 -0.01519 0.99107 1.27503 1.56944 1.85851 1.94479 2.57481 3.07508 3.26343 3.36423 3.50173 3.56526 3.67966 3.77731 3.84628 3.89358 3.93531 4.03687 4.16461 4.28712 4.31148 4.35827 4.39923 4.41506 4.50702 4.64718 4.68966 4.74636 4.76251 4.81384 4.95802 4.98185 5.07649 5.14572 5.17039 5.19917 5.36713 5.42810 5.60318 5.63289 5.69996 5.99296 6.41295 6.60695 6.68526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.071 4.071 3 Si 0.689 3.311 4 C -0.094 4.094 5 C 0.139 3.861 6 O -0.329 6.329 7 C 0.076 3.924 8 C -0.105 4.105 9 H 0.102 0.898 10 C -0.164 4.164 11 C 0.075 3.925 12 H 0.084 0.916 13 O -0.560 6.560 14 C -0.120 4.120 15 C -0.070 4.070 16 C -0.095 4.095 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.037 4.037 21 C -0.104 4.104 22 C -0.104 4.104 23 H 0.378 0.622 24 H 0.079 0.921 25 H -0.261 1.261 26 H -0.254 1.254 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.379 0.621 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -0.218 -0.975 2.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.181 4.181 3 Si 0.591 3.409 4 C -0.094 4.094 5 C 0.095 3.905 6 O -0.246 6.246 7 C 0.003 3.997 8 C -0.124 4.124 9 H 0.121 0.879 10 C -0.202 4.202 11 C 0.016 3.984 12 H 0.101 0.899 13 O -0.366 6.366 14 C -0.157 4.157 15 C -0.071 4.071 16 C -0.113 4.113 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.038 4.038 21 C -0.122 4.122 22 C -0.122 4.122 23 H 0.226 0.774 24 H 0.097 0.903 25 H -0.186 1.186 26 H -0.179 1.179 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.994 0.755 -0.302 2.154 hybrid contribution -0.869 -0.628 -0.644 1.250 sum 1.125 0.128 -0.946 1.475 Atomic orbital electron populations 1.86561 1.17934 1.79917 1.49821 1.24712 0.84314 1.10749 0.98276 0.94843 0.91586 0.74504 0.80015 1.19180 1.01823 0.92714 0.95726 1.18075 0.96462 0.88977 0.86983 1.85892 1.23860 1.72990 1.41860 1.22928 0.79404 1.00159 0.97247 1.22292 0.96393 0.95083 0.98620 0.87944 1.23775 0.98524 0.95873 1.01988 1.23313 0.89577 0.88823 0.96646 0.89860 1.86528 1.56054 1.19291 1.74720 1.23053 0.95155 0.94566 1.02938 1.18343 1.01209 0.94192 0.93345 1.20967 0.99007 0.93082 0.98229 1.20920 0.98715 1.00361 0.93584 1.20945 0.98710 0.94203 0.98824 1.21057 0.99862 0.94850 0.96898 1.18017 0.98491 0.93405 0.93844 1.21006 0.99947 0.93133 0.98142 1.20655 0.98679 0.99963 0.92905 0.77375 0.90288 1.18603 1.17931 0.93094 0.90424 0.90880 0.89225 0.77306 0.88967 0.90317 0.85312 0.85709 0.85636 0.85109 0.84728 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.59 10.68 -35.23 -0.38 -0.96 16 2 C -0.07 -0.06 2.32 36.00 0.08 0.03 16 3 Si 0.69 -0.36 30.16 -169.99 -5.13 -5.49 16 4 C -0.09 -0.23 5.27 -104.83 -0.55 -0.79 16 5 C 0.14 0.48 5.67 -39.12 -0.22 0.26 16 6 O -0.33 -1.00 8.52 -19.16 -0.16 -1.16 16 7 C 0.08 0.13 5.83 37.16 0.22 0.35 16 8 C -0.11 -0.02 4.01 -89.81 -0.36 -0.38 16 9 H 0.10 -0.01 8.14 -51.93 -0.42 -0.44 16 10 C -0.16 0.01 7.46 -25.92 -0.19 -0.18 16 11 C 0.08 0.00 5.21 -25.91 -0.14 -0.14 16 12 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 13 O -0.56 -0.66 13.67 -35.23 -0.48 -1.14 16 14 C -0.12 -0.02 7.47 -25.91 -0.19 -0.22 16 15 C -0.07 -0.24 5.75 -106.73 -0.61 -0.85 16 16 C -0.09 -0.23 9.56 -39.52 -0.38 -0.60 16 17 C -0.12 -0.14 9.95 -39.93 -0.40 -0.53 16 18 C -0.11 -0.07 9.95 -39.94 -0.40 -0.47 16 19 C -0.11 -0.11 9.77 -39.48 -0.39 -0.49 16 20 C -0.04 -0.09 5.74 -106.85 -0.61 -0.70 16 21 C -0.10 -0.12 9.77 -39.46 -0.39 -0.51 16 22 C -0.10 -0.15 8.56 -39.96 -0.34 -0.49 16 23 H 0.38 -1.01 8.74 45.56 0.40 -0.61 16 24 H 0.08 0.02 7.77 -51.93 -0.40 -0.39 16 25 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 26 H -0.25 -0.51 6.73 56.52 0.38 -0.13 16 27 H 0.05 0.11 7.84 -51.93 -0.41 -0.30 16 28 H 0.08 0.18 5.91 -51.93 -0.31 -0.13 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 0.06 7.90 -51.93 -0.41 -0.35 16 31 H 0.38 -1.09 9.12 45.56 0.42 -0.68 16 32 H 0.09 0.10 8.10 -51.93 -0.42 -0.32 16 33 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.13 0.21 7.62 -52.49 -0.40 -0.19 16 35 H 0.12 -0.10 8.06 -52.48 -0.42 -0.53 16 36 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 37 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 39 H 0.13 -0.02 4.79 -52.49 -0.25 -0.27 16 LS Contribution 321.74 15.07 4.85 4.85 Total: 0.00 -6.63 321.74 -10.55 -17.19 By element: Atomic # 1 Polarization: -3.16 SS G_CDS: -4.39 Total: -7.55 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.87 Total: -5.73 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: -1.02 Total: -3.27 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.13 Total: -5.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -6.63 -10.55 -17.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.169 kcal (2) G-P(sol) polarization free energy of solvation -6.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds