Wall clock time and date at job start Mon Mar 8 2021 11:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.47034 * 2 1 4 4 C 1.50694 * 109.47356 * 119.99964 * 2 1 3 5 5 C 1.36630 * 119.53951 * 75.28885 * 4 2 1 6 6 O 1.35815 * 120.22655 * 359.96636 * 5 4 2 7 7 C 1.42900 * 116.99965 * 270.30208 * 6 5 4 8 8 C 1.53001 * 109.46859 * 179.97438 * 7 6 5 9 9 H 1.09006 * 112.84920 * 316.19772 * 8 7 6 10 10 C 1.53782 * 113.61414 * 87.50328 * 8 7 6 11 11 C 1.53784 * 87.08079 * 139.98054 * 10 8 7 12 12 H 1.09001 * 113.69050 * 89.12815 * 11 10 8 13 13 O 1.42892 * 113.61720 * 220.02122 * 11 10 8 14 14 C 1.53782 * 113.61393 * 185.00548 * 8 7 6 15 15 C 1.41002 * 119.54328 * 180.27322 * 5 4 2 16 16 C 1.40376 * 121.28812 * 179.67792 * 15 5 4 17 17 C 1.36169 * 119.66145 * 180.02562 * 16 15 5 18 18 C 1.39303 * 120.97533 * 359.97438 * 17 16 15 19 19 C 1.36143 * 120.97381 * 359.97438 * 18 17 16 20 20 C 1.40502 * 119.65034 * 0.03928 * 19 18 17 21 21 C 1.40567 * 121.27348 * 179.97438 * 20 19 18 22 22 C 1.36147 * 119.76731 * 180.02562 * 21 20 19 23 23 H 0.96701 * 114.00605 * 60.00112 * 1 2 3 24 24 H 1.09002 * 109.47313 * 240.00266 * 2 1 3 25 25 H 1.48503 * 109.99920 * 298.68009 * 3 2 1 26 26 H 1.48492 * 109.99955 * 60.00067 * 3 2 1 27 27 H 1.08994 * 109.47121 * 300.00158 * 7 6 5 28 28 H 1.09001 * 109.47144 * 60.00685 * 7 6 5 29 29 H 1.08998 * 113.61878 * 254.53176 * 10 8 7 30 30 H 1.09005 * 113.61142 * 25.43770 * 10 8 7 31 31 H 0.96699 * 113.99881 * 277.49978 * 13 11 10 32 32 H 1.08995 * 113.61071 * 334.56105 * 14 8 7 33 33 H 1.08994 * 113.61546 * 105.46960 * 14 8 7 34 34 H 1.08002 * 120.16786 * 359.97438 * 16 15 5 35 35 H 1.08008 * 119.50918 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.51596 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.17332 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.11976 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.46412 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8713 -2.0739 1.2927 6 8 1.3617 -2.7841 0.2532 7 6 -0.0436 -3.0428 0.2712 8 6 -0.4297 -3.8480 -0.9712 9 1 0.0416 -3.4753 -1.8806 10 6 -0.2973 -5.3688 -0.7853 11 6 -1.6064 -5.5010 -1.5813 12 1 -1.4580 -5.5818 -2.6581 13 8 -2.4911 -6.4982 -1.0668 14 6 -1.9441 -4.0761 -1.1112 15 6 2.3360 -2.7383 2.4463 16 6 2.2854 -4.1372 2.5521 17 6 2.7429 -4.7445 3.6817 18 6 3.2623 -3.9980 4.7369 19 6 3.3278 -2.6399 4.6688 20 6 2.8648 -1.9785 3.5190 21 6 2.9158 -0.5777 3.4125 22 6 2.4582 0.0315 2.2843 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5878 2.4586 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 -0.2969 -3.6110 1.1661 28 1 -0.5870 -2.0979 0.2746 29 1 0.5673 -5.7971 -1.2924 30 1 -0.3830 -5.6909 0.2526 31 1 -2.2838 -7.3964 -1.3589 32 1 -2.4798 -4.0449 -0.1626 33 1 -2.4089 -3.4609 -1.8815 34 1 1.8849 -4.7286 1.7420 35 1 2.7032 -5.8210 3.7603 36 1 3.6189 -4.5042 5.6218 37 1 3.7333 -2.0739 5.4945 38 1 3.3166 0.0131 4.2229 39 1 2.4993 1.1081 2.2079 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:39 Heat of formation + Delta-G solvation = -39.192320 kcal Electronic energy + Delta-G solvation = -22930.653236 eV Core-core repulsion = 19578.127974 eV Total energy + Delta-G solvation = -3352.525261 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90675 -40.47783 -39.21436 -38.11242 -36.91294 -36.02821 -33.09537 -32.01346 -30.40913 -28.94270 -26.81992 -26.66839 -24.45309 -23.53834 -22.93452 -22.59302 -20.60797 -19.10606 -18.70866 -18.52661 -18.47493 -17.68498 -16.90752 -16.53950 -16.28863 -16.08932 -15.67628 -15.37565 -15.14889 -14.89587 -14.74905 -14.20491 -14.10167 -14.04032 -13.79142 -13.51436 -13.35840 -12.89016 -12.63697 -12.53036 -12.27903 -12.12373 -12.05072 -11.86853 -11.71574 -11.36487 -10.90650 -10.76568 -10.72127 -10.45562 -9.67181 -8.80864 -4.94097 -0.58394 -0.11597 0.88867 1.27000 1.56982 1.79772 1.90810 2.47685 3.01191 3.29666 3.33830 3.45616 3.54625 3.62916 3.74309 3.80802 3.87451 3.92738 4.00818 4.13924 4.20946 4.25329 4.33230 4.34752 4.36081 4.44641 4.58854 4.64550 4.70799 4.72005 4.75110 4.89834 4.94278 5.03008 5.09679 5.11814 5.14002 5.33578 5.35689 5.53267 5.55010 5.63433 5.94858 6.45399 6.54717 6.84655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.083 4.083 3 Si 0.771 3.229 4 C -0.103 4.103 5 C 0.114 3.886 6 O -0.335 6.335 7 C 0.081 3.919 8 C -0.100 4.100 9 H 0.109 0.891 10 C -0.161 4.161 11 C 0.077 3.923 12 H 0.102 0.898 13 O -0.582 6.582 14 C -0.122 4.122 15 C -0.090 4.090 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.057 4.057 21 C -0.101 4.101 22 C -0.117 4.117 23 H 0.393 0.607 24 H 0.082 0.918 25 H -0.284 1.284 26 H -0.287 1.287 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -0.038 -0.725 3.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.191 4.191 3 Si 0.675 3.325 4 C -0.104 4.104 5 C 0.070 3.930 6 O -0.253 6.253 7 C 0.007 3.993 8 C -0.118 4.118 9 H 0.127 0.873 10 C -0.199 4.199 11 C 0.018 3.982 12 H 0.120 0.880 13 O -0.390 6.390 14 C -0.160 4.160 15 C -0.091 4.091 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.057 4.057 21 C -0.119 4.119 22 C -0.134 4.134 23 H 0.243 0.757 24 H 0.100 0.900 25 H -0.211 1.211 26 H -0.214 1.214 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.673 0.904 -0.069 2.822 hybrid contribution -1.105 -0.714 -0.680 1.481 sum 1.568 0.190 -0.748 1.747 Atomic orbital electron populations 1.86523 1.18248 1.80481 1.50928 1.24969 0.84262 1.12083 0.97776 0.93860 0.90329 0.71516 0.76779 1.19478 1.01637 0.92684 0.96583 1.18302 0.97619 0.89606 0.87459 1.85876 1.24235 1.73120 1.42020 1.22885 0.79084 0.99757 0.97558 1.22259 0.96470 0.95007 0.98052 0.87288 1.23723 0.99022 0.95636 1.01499 1.23392 0.88994 0.88297 0.97468 0.88035 1.86483 1.56589 1.20644 1.75305 1.23060 0.94959 0.95345 1.02620 1.18605 1.01748 0.94824 0.93889 1.21046 1.00265 0.93035 0.98977 1.21211 0.97792 1.01422 0.93228 1.21272 0.98394 0.94366 0.99401 1.21394 0.99181 0.95281 0.96973 1.18324 0.99022 0.94162 0.94234 1.21352 0.98954 0.92924 0.98671 1.20867 0.98988 1.00638 0.92933 0.75699 0.90018 1.21058 1.21381 0.94282 0.91218 0.90250 0.90356 0.75465 0.90354 0.89291 0.85689 0.84016 0.83298 0.82687 0.82061 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.79 10.68 -148.98 -1.59 -3.38 16 2 C -0.08 -0.20 2.32 71.23 0.17 -0.03 16 3 Si 0.77 -0.76 30.16 68.60 2.07 1.30 16 4 C -0.10 -0.63 5.27 -20.00 -0.11 -0.74 16 5 C 0.11 0.99 5.67 22.57 0.13 1.12 16 6 O -0.34 -2.71 8.52 -91.47 -0.78 -3.48 16 7 C 0.08 0.44 5.83 71.98 0.42 0.86 16 8 C -0.10 -0.14 4.01 -10.27 -0.04 -0.18 16 9 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 10 C -0.16 -0.13 7.46 31.12 0.23 0.10 16 11 C 0.08 0.01 5.21 31.12 0.16 0.17 16 12 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 13 O -0.58 -1.57 13.67 -148.98 -2.04 -3.61 16 14 C -0.12 -0.15 7.47 31.12 0.23 0.08 16 15 C -0.09 -0.75 5.75 -21.23 -0.12 -0.87 16 16 C -0.12 -0.74 9.56 22.31 0.21 -0.53 16 17 C -0.12 -0.32 9.95 22.04 0.22 -0.11 16 18 C -0.12 -0.09 9.95 22.04 0.22 0.13 16 19 C -0.11 -0.15 9.77 22.33 0.22 0.06 16 20 C -0.06 -0.30 5.74 -21.31 -0.12 -0.43 16 21 C -0.10 -0.22 9.77 22.35 0.22 0.00 16 22 C -0.12 -0.39 8.56 22.02 0.19 -0.20 16 23 H 0.39 -1.81 8.74 -74.06 -0.65 -2.46 16 24 H 0.08 0.10 7.77 -2.39 -0.02 0.09 16 25 H -0.28 -0.76 7.11 99.48 0.71 -0.06 16 26 H -0.29 -1.23 6.73 99.48 0.67 -0.57 16 27 H 0.04 0.28 7.84 -2.39 -0.02 0.26 16 28 H 0.07 0.47 5.91 -2.39 -0.01 0.46 16 29 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 0.24 7.90 -2.38 -0.02 0.22 16 31 H 0.40 -2.24 9.12 -74.06 -0.68 -2.92 16 32 H 0.08 0.32 8.10 -2.39 -0.02 0.30 16 33 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.13 0.73 7.62 -2.91 -0.02 0.71 16 35 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 36 H 0.15 -0.66 8.06 -2.91 -0.02 -0.68 16 37 H 0.16 -0.67 8.06 -2.91 -0.02 -0.69 16 38 H 0.16 -0.67 8.06 -2.91 -0.02 -0.69 16 39 H 0.15 -0.05 4.79 -2.91 -0.01 -0.06 16 Total: 0.00 -16.28 321.74 -0.36 -16.64 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: -0.24 Total: -6.91 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 2.23 Total: -0.55 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -4.41 Total: -10.48 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.07 Total: 1.30 kcal Total: -16.28 -0.36 -16.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.556 kcal (2) G-P(sol) polarization free energy of solvation -16.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds