Wall clock time and date at job start Mon Mar 8 2021 16:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 C 1.53004 * 109.47275 * 239.99848 * 2 1 3 5 5 Si 1.86306 * 109.47118 * 120.00090 * 2 1 3 6 6 C 1.86301 * 109.46936 * 300.00025 * 5 2 1 7 7 C 1.86297 * 109.47131 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47005 * 59.99949 * 5 2 1 9 9 C 1.42896 * 113.99936 * 180.02562 * 8 5 2 10 10 O 1.42896 * 109.47422 * 180.02562 * 9 8 5 11 11 C 1.35806 * 117.00275 * 74.99817 * 10 9 8 12 12 C 1.36630 * 120.23000 * 90.00152 * 11 10 9 13 13 C 1.50696 * 119.53152 * 359.97438 * 12 11 10 14 14 O 1.42896 * 109.47220 * 75.00281 * 13 12 11 15 15 Si 1.86301 * 109.46719 * 194.99913 * 13 12 11 16 16 H 1.48506 * 109.47302 * 179.97438 * 15 13 12 17 17 H 1.48503 * 109.47334 * 60.00029 * 15 13 12 18 18 H 1.48500 * 109.47376 * 300.00026 * 15 13 12 19 19 C 1.39233 * 120.92951 * 180.25897 * 12 11 10 20 20 C 1.36140 * 121.06055 * 359.40998 * 19 12 11 21 21 C 1.40570 * 119.76978 * 0.60120 * 20 19 12 22 22 C 1.40505 * 121.27123 * 179.70043 * 21 20 19 23 23 C 1.36138 * 119.65274 * 179.97438 * 22 21 20 24 24 C 1.39311 * 120.97185 * 0.02771 * 23 22 21 25 25 C 1.36175 * 120.97427 * 359.92964 * 24 23 22 26 26 C 1.40368 * 119.66494 * 0.08807 * 25 24 23 27 27 H 1.09002 * 109.47259 * 300.00444 * 1 2 3 28 28 H 1.09010 * 109.47041 * 60.00135 * 1 2 3 29 29 H 1.08996 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46982 * 299.99601 * 3 2 1 32 32 H 1.09002 * 109.47102 * 60.00358 * 3 2 1 33 33 H 1.09002 * 109.47219 * 300.00127 * 4 2 1 34 34 H 1.09001 * 109.46850 * 60.00196 * 4 2 1 35 35 H 1.09005 * 109.47013 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46937 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47170 * 299.99974 * 6 5 2 38 38 H 1.09002 * 109.47268 * 59.99539 * 6 5 2 39 39 H 1.09002 * 109.47187 * 299.99429 * 7 5 2 40 40 H 1.09002 * 109.47160 * 59.99913 * 7 5 2 41 41 H 1.09001 * 109.47035 * 180.02562 * 7 5 2 42 42 H 1.09000 * 109.47600 * 59.99775 * 9 8 5 43 43 H 1.09003 * 109.46882 * 300.00078 * 9 8 5 44 44 H 1.08996 * 109.47524 * 314.99628 * 13 12 11 45 45 H 0.96708 * 114.00095 * 179.97438 * 14 13 12 46 46 H 1.07999 * 119.46896 * 179.72599 * 19 12 11 47 47 H 1.07995 * 120.11641 * 180.26067 * 20 19 12 48 48 H 1.08005 * 120.17357 * 0.02562 * 22 21 20 49 49 H 1.07999 * 119.51304 * 180.02562 * 23 22 21 50 50 H 1.08003 * 119.51768 * 179.97438 * 24 23 22 51 51 H 1.07997 * 120.17163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0139 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5211 9 6 2.0284 -3.1814 2.6519 10 8 1.5009 -4.5058 2.5539 11 6 2.0893 -5.3391 1.6574 12 6 3.1423 -6.1234 2.0354 13 6 3.6464 -6.0569 3.4540 14 8 2.7365 -6.7437 4.3156 15 14 5.3241 -6.8606 3.5550 16 1 5.8213 -6.7946 4.9528 17 1 6.2697 -6.1469 2.6596 18 1 5.2190 -8.2805 3.1331 19 6 3.7598 -6.9789 1.1269 20 6 3.3259 -7.0682 -0.1604 21 6 2.2456 -6.2776 -0.5893 22 6 1.7760 -6.3399 -1.9120 23 6 0.7269 -5.5598 -2.2918 24 6 0.1102 -4.6980 -1.3877 25 6 0.5381 -4.6122 -0.0977 26 6 1.6174 -5.4011 0.3301 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.8929 -0.5141 3.9323 37 1 1.8932 1.0276 3.0423 38 1 0.4399 0.0000 3.0423 39 1 4.3776 -1.3912 0.6316 40 1 4.3769 0.1502 1.5218 41 1 4.3772 -1.3919 2.4113 42 1 1.6636 -2.7113 3.5652 43 1 3.1173 -3.2252 2.6758 44 1 3.7236 -5.0147 3.7637 45 1 2.9986 -6.7416 5.2464 46 1 4.5931 -7.5852 1.4499 47 1 3.8135 -7.7400 -0.8512 48 1 2.2444 -7.0039 -2.6236 49 1 0.3676 -5.6098 -3.3091 50 1 -0.7201 -4.0893 -1.7143 51 1 0.0501 -3.9399 0.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_14468166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:03:12 Heat of formation + Delta-G solvation = -124.716444 kcal Electronic energy + Delta-G solvation = -30526.534280 eV Core-core repulsion = 26707.244595 eV Total energy + Delta-G solvation = -3819.289685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.172 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77249 -39.55909 -38.31121 -36.96424 -36.89083 -36.50163 -32.87019 -31.88170 -29.99242 -29.56749 -29.17103 -27.91655 -27.44237 -27.29593 -26.03728 -24.29073 -22.77783 -22.47838 -20.50372 -19.26172 -18.67383 -18.52849 -17.85529 -17.52274 -17.18021 -16.74518 -15.95888 -15.89545 -15.60856 -15.29159 -15.03428 -14.91149 -14.75892 -14.55951 -14.53010 -14.36053 -14.09122 -13.97709 -13.95289 -13.61844 -13.51496 -13.34677 -13.19880 -12.98698 -12.97826 -12.79145 -12.51773 -12.43283 -12.18987 -12.09484 -11.97493 -11.92666 -11.81428 -11.68418 -11.61997 -11.50491 -11.28783 -10.60279 -10.49025 -10.26980 -10.12341 -9.48534 -8.62986 -0.42471 0.06399 1.06905 1.10673 1.30228 1.40599 1.45858 1.61596 1.86694 1.93815 1.97839 2.26809 2.71093 3.19242 3.46485 3.72652 3.80830 3.88124 4.00335 4.05319 4.07426 4.08383 4.14390 4.16344 4.35047 4.41172 4.44398 4.46631 4.56202 4.59515 4.60843 4.62014 4.63847 4.71758 4.76429 4.81709 4.95868 5.00195 5.06355 5.06810 5.09615 5.18669 5.22463 5.24362 5.28922 5.29791 5.36485 5.44570 5.45557 5.46263 5.52440 5.71165 5.74401 5.78110 6.12271 6.47341 6.64095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.371 4.371 3 C -0.137 4.137 4 C -0.133 4.133 5 Si 1.291 2.709 6 C -0.512 4.512 7 C -0.514 4.514 8 O -0.644 6.644 9 C 0.253 3.747 10 O -0.303 6.303 11 C 0.143 3.857 12 C -0.102 4.102 13 C -0.074 4.074 14 O -0.535 6.535 15 Si 0.940 3.060 16 H -0.254 1.254 17 H -0.247 1.247 18 H -0.244 1.244 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.039 4.039 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.127 4.127 25 C -0.070 4.070 26 C -0.064 4.064 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.378 0.622 46 H 0.127 0.873 47 H 0.134 0.866 48 H 0.128 0.872 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 2.046 0.492 3.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.415 4.415 3 C -0.194 4.194 4 C -0.190 4.190 5 Si 1.423 2.577 6 C -0.614 4.614 7 C -0.616 4.616 8 O -0.605 6.605 9 C 0.141 3.859 10 O -0.220 6.220 11 C 0.099 3.901 12 C -0.103 4.103 13 C -0.185 4.185 14 O -0.341 6.341 15 Si 0.763 3.237 16 H -0.178 1.178 17 H -0.170 1.170 18 H -0.168 1.168 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.039 4.039 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.145 4.145 25 C -0.087 4.087 26 C -0.064 4.064 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.225 0.775 46 H 0.144 0.856 47 H 0.151 0.849 48 H 0.146 0.854 49 H 0.141 0.859 50 H 0.141 0.859 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.409 1.333 -0.045 2.754 hybrid contribution 0.225 0.825 0.457 0.969 sum 2.634 2.157 0.412 3.430 Atomic orbital electron populations 1.21508 0.93689 1.02050 1.01823 1.25733 1.00749 1.02512 1.12473 1.21560 1.00754 0.94898 1.02208 1.21506 1.00514 1.00336 0.96692 0.76555 0.62952 0.52690 0.65463 1.27043 1.07302 1.09661 1.17439 1.27056 1.24989 1.04967 1.04538 1.85326 1.79714 1.46344 1.49118 1.23491 0.95474 0.79147 0.87758 1.86224 1.59382 1.20543 1.55833 1.18072 0.91773 0.92598 0.87648 1.19196 0.96696 0.99993 0.94393 1.24623 1.03860 1.00330 0.89675 1.86584 1.49428 1.77120 1.20932 0.85858 0.75030 0.81510 0.81352 1.17843 1.17049 1.16790 1.20597 1.00411 0.98336 0.93718 1.20998 0.96125 0.98837 0.95948 1.18024 0.95864 0.96189 0.93804 1.20983 0.97679 1.00226 0.94584 1.20934 0.95748 0.95771 0.99806 1.20912 1.00532 0.99351 0.93706 1.21112 0.94593 0.96773 0.96268 1.18297 0.97578 0.98149 0.92406 0.92701 0.92749 0.92113 0.92554 0.92412 0.92506 0.92043 0.92781 0.92853 0.91465 0.90491 0.90576 0.90741 0.90438 0.91540 0.87760 0.92911 0.91496 0.77547 0.85552 0.84852 0.85390 0.85923 0.85909 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 7.85 37.15 0.29 0.35 16 2 C -0.37 0.28 0.53 -90.62 -0.05 0.24 16 3 C -0.14 0.14 7.85 37.16 0.29 0.43 16 4 C -0.13 0.01 7.85 37.16 0.29 0.30 16 5 Si 1.29 -2.06 8.45 -169.99 -1.44 -3.49 16 6 C -0.51 0.80 8.50 101.05 0.86 1.66 16 7 C -0.51 0.61 8.50 101.05 0.86 1.47 16 8 O -0.64 -0.07 6.59 -59.04 -0.39 -0.46 16 9 C 0.25 -0.02 5.73 101.05 0.58 0.56 16 10 O -0.30 -0.91 8.88 -42.95 -0.38 -1.29 16 11 C 0.14 0.53 5.55 -39.11 -0.22 0.31 16 12 C -0.10 -0.29 5.27 -104.84 -0.55 -0.84 16 13 C -0.07 -0.05 2.31 36.00 0.08 0.04 16 14 O -0.54 -0.68 12.86 -35.23 -0.45 -1.14 16 15 Si 0.94 -0.26 25.44 -169.99 -4.32 -4.58 16 16 H -0.25 0.11 7.11 56.52 0.40 0.51 16 17 H -0.25 -0.04 7.11 56.52 0.40 0.37 16 18 H -0.24 -0.18 6.72 56.52 0.38 0.20 16 19 C -0.11 -0.23 8.56 -39.97 -0.34 -0.58 16 20 C -0.10 -0.18 9.77 -39.46 -0.39 -0.56 16 21 C -0.04 -0.11 5.74 -106.84 -0.61 -0.73 16 22 C -0.12 -0.17 9.77 -39.48 -0.39 -0.56 16 23 C -0.10 -0.12 9.95 -39.94 -0.40 -0.52 16 24 C -0.13 -0.20 9.95 -39.92 -0.40 -0.60 16 25 C -0.07 -0.20 8.63 -39.52 -0.34 -0.54 16 26 C -0.06 -0.24 5.74 -106.72 -0.61 -0.85 16 27 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 28 H 0.05 -0.01 8.14 -51.92 -0.42 -0.43 16 29 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 30 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 33 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.05 -0.02 7.80 -51.93 -0.40 -0.42 16 36 H 0.07 -0.14 7.48 -51.93 -0.39 -0.53 16 37 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 38 H 0.08 -0.09 7.79 -51.93 -0.40 -0.50 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.08 -0.12 7.79 -51.93 -0.40 -0.52 16 41 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 42 H 0.11 -0.26 7.21 -51.93 -0.37 -0.64 16 43 H 0.05 -0.09 6.47 -51.93 -0.34 -0.42 16 44 H 0.07 -0.09 6.68 -51.93 -0.35 -0.43 16 45 H 0.38 -1.28 8.74 45.56 0.40 -0.88 16 46 H 0.13 0.06 4.78 -52.49 -0.25 -0.19 16 47 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 48 H 0.13 -0.09 8.06 -52.48 -0.42 -0.51 16 49 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 50 H 0.12 -0.02 8.06 -52.48 -0.42 -0.45 16 51 H 0.14 0.37 6.50 -52.49 -0.34 0.03 16 LS Contribution 401.45 15.07 6.05 6.05 Total: 0.00 -6.01 401.45 -9.84 -15.85 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -7.87 Total: -10.52 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.04 Total: -0.42 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: -1.22 Total: -2.88 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: -5.76 Total: -8.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -6.01 -9.84 -15.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_14468166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.869 kcal (2) G-P(sol) polarization free energy of solvation -6.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds