Wall clock time and date at job start Mon Mar 8 2021 16:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 C 1.53004 * 109.47275 * 239.99848 * 2 1 3 5 5 Si 1.86306 * 109.47118 * 120.00090 * 2 1 3 6 6 C 1.86301 * 109.46936 * 300.00025 * 5 2 1 7 7 C 1.86297 * 109.47131 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47005 * 59.99949 * 5 2 1 9 9 C 1.42896 * 113.99936 * 180.02562 * 8 5 2 10 10 O 1.42896 * 109.47422 * 180.02562 * 9 8 5 11 11 C 1.35806 * 117.00275 * 74.99817 * 10 9 8 12 12 C 1.36630 * 120.23000 * 90.00152 * 11 10 9 13 13 C 1.50696 * 119.53152 * 359.97438 * 12 11 10 14 14 O 1.42896 * 109.47220 * 75.00281 * 13 12 11 15 15 Si 1.86301 * 109.46719 * 194.99913 * 13 12 11 16 16 H 1.48506 * 109.47302 * 179.97438 * 15 13 12 17 17 H 1.48503 * 109.47334 * 60.00029 * 15 13 12 18 18 H 1.48500 * 109.47376 * 300.00026 * 15 13 12 19 19 C 1.39233 * 120.92951 * 180.25897 * 12 11 10 20 20 C 1.36140 * 121.06055 * 359.40998 * 19 12 11 21 21 C 1.40570 * 119.76978 * 0.60120 * 20 19 12 22 22 C 1.40505 * 121.27123 * 179.70043 * 21 20 19 23 23 C 1.36138 * 119.65274 * 179.97438 * 22 21 20 24 24 C 1.39311 * 120.97185 * 0.02771 * 23 22 21 25 25 C 1.36175 * 120.97427 * 359.92964 * 24 23 22 26 26 C 1.40368 * 119.66494 * 0.08807 * 25 24 23 27 27 H 1.09002 * 109.47259 * 300.00444 * 1 2 3 28 28 H 1.09010 * 109.47041 * 60.00135 * 1 2 3 29 29 H 1.08996 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46982 * 299.99601 * 3 2 1 32 32 H 1.09002 * 109.47102 * 60.00358 * 3 2 1 33 33 H 1.09002 * 109.47219 * 300.00127 * 4 2 1 34 34 H 1.09001 * 109.46850 * 60.00196 * 4 2 1 35 35 H 1.09005 * 109.47013 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46937 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47170 * 299.99974 * 6 5 2 38 38 H 1.09002 * 109.47268 * 59.99539 * 6 5 2 39 39 H 1.09002 * 109.47187 * 299.99429 * 7 5 2 40 40 H 1.09002 * 109.47160 * 59.99913 * 7 5 2 41 41 H 1.09001 * 109.47035 * 180.02562 * 7 5 2 42 42 H 1.09000 * 109.47600 * 59.99775 * 9 8 5 43 43 H 1.09003 * 109.46882 * 300.00078 * 9 8 5 44 44 H 1.08996 * 109.47524 * 314.99628 * 13 12 11 45 45 H 0.96708 * 114.00095 * 179.97438 * 14 13 12 46 46 H 1.07999 * 119.46896 * 179.72599 * 19 12 11 47 47 H 1.07995 * 120.11641 * 180.26067 * 20 19 12 48 48 H 1.08005 * 120.17357 * 0.02562 * 22 21 20 49 49 H 1.07999 * 119.51304 * 180.02562 * 23 22 21 50 50 H 1.08003 * 119.51768 * 179.97438 * 24 23 22 51 51 H 1.07997 * 120.17163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0139 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5211 9 6 2.0284 -3.1814 2.6519 10 8 1.5009 -4.5058 2.5539 11 6 2.0893 -5.3391 1.6574 12 6 3.1423 -6.1234 2.0354 13 6 3.6464 -6.0569 3.4540 14 8 2.7365 -6.7437 4.3156 15 14 5.3241 -6.8606 3.5550 16 1 5.8213 -6.7946 4.9528 17 1 6.2697 -6.1469 2.6596 18 1 5.2190 -8.2805 3.1331 19 6 3.7598 -6.9789 1.1269 20 6 3.3259 -7.0682 -0.1604 21 6 2.2456 -6.2776 -0.5893 22 6 1.7760 -6.3399 -1.9120 23 6 0.7269 -5.5598 -2.2918 24 6 0.1102 -4.6980 -1.3877 25 6 0.5381 -4.6122 -0.0977 26 6 1.6174 -5.4011 0.3301 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.8929 -0.5141 3.9323 37 1 1.8932 1.0276 3.0423 38 1 0.4399 0.0000 3.0423 39 1 4.3776 -1.3912 0.6316 40 1 4.3769 0.1502 1.5218 41 1 4.3772 -1.3919 2.4113 42 1 1.6636 -2.7113 3.5652 43 1 3.1173 -3.2252 2.6758 44 1 3.7236 -5.0147 3.7637 45 1 2.9986 -6.7416 5.2464 46 1 4.5931 -7.5852 1.4499 47 1 3.8135 -7.7400 -0.8512 48 1 2.2444 -7.0039 -2.6236 49 1 0.3676 -5.6098 -3.3091 50 1 -0.7201 -4.0893 -1.7143 51 1 0.0501 -3.9399 0.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_14468166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:03:11 Heat of formation + Delta-G solvation = -115.672794 kcal Electronic energy + Delta-G solvation = -30526.142118 eV Core-core repulsion = 26707.244595 eV Total energy + Delta-G solvation = -3818.897523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.172 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.85293 -39.60795 -38.33478 -36.97308 -36.84921 -36.53878 -32.96479 -31.96211 -30.07680 -29.45478 -29.08552 -27.84792 -27.39501 -27.30737 -26.04803 -24.38410 -22.85274 -22.56802 -20.46010 -19.32631 -18.71315 -18.53328 -17.86541 -17.55708 -17.20453 -16.77617 -15.92413 -15.88934 -15.65936 -15.32663 -15.07277 -14.86485 -14.74393 -14.59498 -14.55235 -14.35955 -14.08184 -14.03191 -13.92190 -13.53583 -13.40059 -13.24896 -13.19520 -12.96550 -12.92874 -12.82428 -12.54801 -12.39979 -12.19709 -12.09680 -12.00728 -11.89729 -11.79302 -11.66693 -11.57385 -11.50133 -11.34030 -10.70661 -10.40181 -10.24888 -10.06133 -9.60551 -8.73280 -0.52258 -0.05949 0.97813 1.12851 1.39944 1.44965 1.49064 1.71356 1.87807 1.91126 2.07697 2.33937 2.68257 3.10118 3.46434 3.68527 3.85677 3.90048 3.94854 4.08327 4.11694 4.12156 4.15219 4.17252 4.32475 4.36906 4.41243 4.45884 4.53364 4.67235 4.69774 4.70754 4.76253 4.76903 4.81340 4.83311 4.95713 4.99523 5.07554 5.08933 5.09426 5.14748 5.16798 5.19686 5.28120 5.35452 5.37726 5.40478 5.46314 5.56134 5.61112 5.62682 5.65605 5.67760 6.03844 6.39879 6.85019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.377 4.377 3 C -0.141 4.141 4 C -0.133 4.133 5 Si 1.318 2.682 6 C -0.516 4.516 7 C -0.521 4.521 8 O -0.658 6.658 9 C 0.240 3.760 10 O -0.319 6.319 11 C 0.126 3.874 12 C -0.116 4.116 13 C -0.081 4.081 14 O -0.557 6.557 15 Si 0.974 3.026 16 H -0.249 1.249 17 H -0.254 1.254 18 H -0.261 1.261 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.058 4.058 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.084 4.084 26 C -0.084 4.084 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.128 0.872 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.395 0.605 46 H 0.139 0.861 47 H 0.157 0.843 48 H 0.150 0.850 49 H 0.144 0.856 50 H 0.137 0.863 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 2.190 0.800 3.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.420 4.420 3 C -0.198 4.198 4 C -0.190 4.190 5 Si 1.449 2.551 6 C -0.618 4.618 7 C -0.622 4.622 8 O -0.618 6.618 9 C 0.129 3.871 10 O -0.236 6.236 11 C 0.082 3.918 12 C -0.117 4.117 13 C -0.191 4.191 14 O -0.365 6.365 15 Si 0.797 3.203 16 H -0.173 1.173 17 H -0.178 1.178 18 H -0.186 1.186 19 C -0.144 4.144 20 C -0.122 4.122 21 C -0.058 4.058 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.148 4.148 25 C -0.102 4.102 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.145 0.855 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.245 0.755 46 H 0.156 0.844 47 H 0.175 0.825 48 H 0.168 0.832 49 H 0.162 0.838 50 H 0.155 0.845 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.051 1.493 0.270 3.407 hybrid contribution -0.007 0.792 0.338 0.862 sum 3.044 2.285 0.608 3.855 Atomic orbital electron populations 1.21525 0.94069 1.01765 1.01887 1.25859 1.00501 1.02901 1.12760 1.21604 1.01211 0.94628 1.02343 1.21498 1.00652 0.99855 0.97024 0.76091 0.62373 0.51855 0.64768 1.27055 1.07125 1.10012 1.17644 1.27126 1.25312 1.05286 1.04499 1.85316 1.80034 1.47022 1.49450 1.23870 0.96466 0.78244 0.88496 1.86182 1.59948 1.21682 1.55791 1.18255 0.92366 0.93300 0.87855 1.19527 0.96641 0.99797 0.95699 1.24791 1.04087 1.01557 0.88657 1.86531 1.50193 1.77340 1.22469 0.85372 0.73826 0.79898 0.81190 1.17277 1.17752 1.18608 1.20843 1.00939 0.98595 0.93981 1.21308 0.95758 0.98766 0.96359 1.18313 0.96481 0.96559 0.94450 1.21290 0.97678 1.00405 0.94437 1.21222 0.95628 0.95387 1.00716 1.21156 1.00781 0.99413 0.93417 1.21133 0.95005 0.97248 0.96835 1.18561 0.98126 0.98783 0.92988 0.92000 0.93323 0.92576 0.91928 0.93084 0.91611 0.92926 0.93287 0.92601 0.90582 0.90064 0.90884 0.91615 0.89949 0.90775 0.85515 0.91601 0.89852 0.75462 0.84369 0.82529 0.83241 0.83790 0.84524 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.58 16 2 C -0.38 0.35 0.53 -10.79 -0.01 0.34 16 3 C -0.14 0.27 7.85 71.98 0.56 0.83 16 4 C -0.13 -0.14 7.85 71.98 0.56 0.43 16 5 Si 1.32 -4.03 8.45 68.60 0.58 -3.45 16 6 C -0.52 1.95 8.50 113.37 0.96 2.91 16 7 C -0.52 1.30 8.50 113.37 0.96 2.27 16 8 O -0.66 -0.66 6.59 -126.21 -0.83 -1.49 16 9 C 0.24 0.06 5.73 113.37 0.65 0.71 16 10 O -0.32 -2.27 8.88 -68.61 -0.61 -2.88 16 11 C 0.13 1.10 5.55 22.57 0.13 1.22 16 12 C -0.12 -0.76 5.27 -20.00 -0.11 -0.86 16 13 C -0.08 -0.12 2.31 71.23 0.16 0.04 16 14 O -0.56 -1.60 12.86 -148.98 -1.92 -3.51 16 15 Si 0.97 -0.78 25.44 68.60 1.75 0.96 16 16 H -0.25 0.47 7.11 99.48 0.71 1.18 16 17 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 18 H -0.26 -0.46 6.72 99.48 0.67 0.21 16 19 C -0.13 -0.60 8.56 22.02 0.19 -0.41 16 20 C -0.10 -0.41 9.77 22.35 0.22 -0.19 16 21 C -0.06 -0.39 5.74 -21.30 -0.12 -0.51 16 22 C -0.12 -0.36 9.77 22.33 0.22 -0.15 16 23 C -0.11 -0.26 9.95 22.04 0.22 -0.04 16 24 C -0.13 -0.53 9.95 22.05 0.22 -0.31 16 25 C -0.08 -0.62 8.63 22.31 0.19 -0.43 16 26 C -0.08 -0.76 5.74 -21.23 -0.12 -0.88 16 27 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 28 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 30 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 31 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 33 H 0.05 0.15 7.97 -2.39 -0.02 0.13 16 34 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.05 0.01 7.80 -2.38 -0.02 0.00 16 36 H 0.08 -0.41 7.48 -2.39 -0.02 -0.43 16 37 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 38 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 40 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 41 H 0.07 -0.30 7.48 -2.39 -0.02 -0.32 16 42 H 0.13 -0.68 7.21 -2.39 -0.02 -0.70 16 43 H 0.07 -0.21 6.47 -2.39 -0.02 -0.23 16 44 H 0.08 -0.23 6.68 -2.39 -0.02 -0.24 16 45 H 0.40 -2.71 8.74 -74.05 -0.65 -3.36 16 46 H 0.14 0.18 4.78 -2.91 -0.01 0.16 16 47 H 0.16 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 49 H 0.14 -0.37 8.06 -2.91 -0.02 -0.40 16 50 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 51 H 0.14 1.01 6.50 -2.91 -0.02 1.00 16 Total: 0.00 -14.76 401.45 5.41 -9.35 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: 0.98 Total: -4.51 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.46 Total: 5.54 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -3.36 Total: -7.88 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.33 Total: -2.49 kcal Total: -14.76 5.41 -9.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_14468166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.327 kcal (2) G-P(sol) polarization free energy of solvation -14.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds