Wall clock time and date at job start Mon Mar 8 2021 16:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99872 * 2 1 3 5 5 O 1.42902 * 109.47001 * 120.00166 * 2 1 3 6 6 C 1.42896 * 114.00409 * 59.99603 * 5 2 1 7 7 H 1.09009 * 112.84727 * 18.80680 * 6 5 2 8 8 C 1.53775 * 113.61907 * 149.99774 * 6 5 2 9 9 C 1.53780 * 87.08291 * 139.98318 * 8 6 5 10 10 H 1.09000 * 113.61087 * 89.20345 * 9 8 6 11 11 C 1.52993 * 113.61724 * 220.02058 * 9 8 6 12 12 O 1.42910 * 109.47101 * 185.00158 * 11 9 8 13 13 C 1.35802 * 116.99710 * 180.02562 * 12 11 9 14 14 C 1.40964 * 120.22483 * 270.22217 * 13 12 11 15 15 C 1.40415 * 121.29657 * 0.02562 * 14 13 12 16 16 C 1.36135 * 119.66344 * 180.27025 * 15 14 13 17 17 C 1.39358 * 120.97920 * 359.97438 * 16 15 14 18 18 C 1.36107 * 120.97800 * 0.02562 * 17 16 15 19 19 C 1.40550 * 119.64680 * 359.97438 * 18 17 16 20 20 C 1.40530 * 121.26842 * 179.97438 * 19 18 17 21 21 C 1.36169 * 119.77197 * 180.02562 * 20 19 18 22 22 C 1.36666 * 120.23009 * 90.00119 * 13 12 11 23 23 C 1.50697 * 119.54153 * 0.02562 * 22 13 12 24 24 O 1.42905 * 109.46996 * 74.72355 * 23 22 13 25 25 Si 1.86301 * 109.47403 * 194.72618 * 23 22 13 26 26 C 1.53774 * 113.61874 * 247.50321 * 6 5 2 27 27 H 1.09000 * 109.47545 * 300.00738 * 1 2 3 28 28 H 1.09000 * 109.46839 * 59.99915 * 1 2 3 29 29 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46671 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47294 * 299.99807 * 3 2 1 32 32 H 1.08999 * 109.47040 * 60.00066 * 3 2 1 33 33 H 1.08997 * 109.47416 * 300.00172 * 4 2 1 34 34 H 1.08998 * 109.47551 * 60.00200 * 4 2 1 35 35 H 1.09007 * 109.47447 * 180.02562 * 4 2 1 36 36 H 1.09010 * 113.60815 * 25.43887 * 8 6 5 37 37 H 1.08992 * 113.69587 * 254.54812 * 8 6 5 38 38 H 1.09005 * 109.47007 * 65.00422 * 11 9 8 39 39 H 1.08996 * 109.47474 * 305.00156 * 11 9 8 40 40 H 1.07996 * 120.16432 * 0.23877 * 15 14 13 41 41 H 1.07998 * 119.50543 * 180.02562 * 16 15 14 42 42 H 1.07995 * 119.51399 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.17546 * 180.02562 * 18 17 16 44 44 H 1.08003 * 120.11425 * 0.04912 * 20 19 18 45 45 H 1.07997 * 119.47237 * 180.02562 * 21 20 19 46 46 H 1.09001 * 109.46613 * 314.72766 * 23 22 13 47 47 H 0.96696 * 114.00036 * 60.00342 * 24 23 22 48 48 H 1.48502 * 109.99925 * 58.67970 * 25 23 22 49 49 H 1.48497 * 109.99842 * 179.97438 * 25 23 22 50 50 H 1.09007 * 113.62045 * 105.46576 * 26 6 5 51 51 H 1.08999 * 113.61279 * 334.56200 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2646 7 1 1.2522 -2.4452 0.3107 8 6 2.5835 -2.9379 2.0078 9 6 1.3665 -3.6119 2.6632 10 1 0.9743 -4.4541 2.0931 11 6 1.5710 -3.9402 4.1434 12 8 0.4395 -4.6640 4.6315 13 6 0.4614 -5.0345 5.9379 14 6 1.0157 -6.2747 6.3145 15 6 1.5555 -7.1523 5.3606 16 6 2.0774 -8.3442 5.7607 17 6 2.0852 -8.7085 7.1058 18 6 1.5708 -7.8832 8.0581 19 6 1.0234 -6.6444 7.6825 20 6 0.4827 -5.7663 8.6371 21 6 -0.0404 -4.5737 8.2392 22 6 -0.0497 -4.2057 6.8968 23 6 -0.6383 -2.8780 6.4945 24 8 -1.9157 -3.0872 5.8890 25 14 -0.8347 -1.8030 8.0033 26 6 0.6075 -2.2962 2.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 3.2170 -2.3998 2.7131 37 1 3.1483 -3.5998 1.3514 38 1 1.6818 -3.0149 4.7089 39 1 2.4687 -4.5473 4.2604 40 1 1.5561 -6.8832 4.3147 41 1 2.4923 -9.0171 5.0249 42 1 2.5057 -9.6596 7.3970 43 1 1.5839 -8.1783 9.0969 44 1 0.4823 -6.0362 9.6829 45 1 -0.4543 -3.9024 8.9771 46 1 0.0254 -2.3873 5.7825 47 1 -2.5585 -3.5209 6.4666 48 1 0.4822 -1.6042 8.6602 49 1 -1.4138 -0.4904 7.6197 50 1 -0.4238 -2.4397 2.1006 51 1 0.7007 -1.5827 3.2418 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:09:49 Heat of formation + Delta-G solvation = -48.152397 kcal Electronic energy + Delta-G solvation = -30671.386882 eV Core-core repulsion = 26696.322607 eV Total energy + Delta-G solvation = -3975.064275 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.187 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.89021 -40.88458 -39.41145 -38.47320 -37.76056 -36.62284 -33.90132 -32.99025 -31.88586 -30.36549 -29.13949 -28.38410 -28.25179 -26.71443 -26.50276 -24.43795 -23.66669 -22.98652 -22.62078 -20.84459 -20.59708 -19.03055 -18.48596 -18.44190 -17.77653 -17.15191 -16.74259 -16.66900 -16.31296 -16.09099 -15.86745 -15.71480 -15.25504 -15.11409 -14.96086 -14.58039 -14.51076 -14.49761 -14.20635 -14.02973 -13.77637 -13.58559 -13.41768 -13.31673 -13.12035 -13.01992 -12.79499 -12.65969 -12.55224 -12.31759 -12.28755 -12.11054 -12.05488 -11.92725 -11.82007 -11.56167 -11.49215 -11.23095 -10.87773 -10.73756 -10.31797 -10.27260 -9.62333 -8.76652 -5.03541 -0.54221 -0.06671 0.94520 1.30612 1.65108 1.85735 1.98884 2.47960 2.78970 3.09614 3.47045 3.49576 3.59637 3.65932 3.71304 3.78141 3.82067 3.87807 3.90714 3.97095 3.98955 4.08738 4.11229 4.16612 4.25411 4.30406 4.34126 4.36584 4.40933 4.50559 4.54697 4.57080 4.63763 4.69697 4.76284 4.77824 4.81651 4.83061 4.89327 4.92124 4.93109 5.03145 5.06433 5.10302 5.11421 5.13635 5.20356 5.30745 5.32634 5.35332 5.39660 5.55573 5.58850 5.65208 5.94651 6.43513 6.56257 6.67108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.362 6.362 6 C 0.062 3.938 7 H 0.092 0.908 8 C -0.128 4.128 9 C -0.107 4.107 10 H 0.104 0.896 11 C 0.079 3.921 12 O -0.320 6.320 13 C 0.141 3.859 14 C -0.072 4.072 15 C -0.096 4.096 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.038 4.038 20 C -0.103 4.103 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.058 4.058 24 O -0.530 6.530 25 Si 0.678 3.322 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.376 0.624 48 H -0.256 1.256 49 H -0.252 1.252 50 H 0.073 0.927 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -1.919 1.256 2.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.281 6.281 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.165 4.165 9 C -0.125 4.125 10 H 0.122 0.878 11 C 0.005 3.995 12 O -0.237 6.237 13 C 0.097 3.903 14 C -0.072 4.072 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.038 4.038 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.169 4.169 24 O -0.334 6.334 25 Si 0.580 3.420 26 C -0.181 4.181 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.125 0.875 47 H 0.222 0.778 48 H -0.180 1.180 49 H -0.177 1.177 50 H 0.092 0.908 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.555 -0.791 1.134 1.490 hybrid contribution 0.359 -0.422 -0.552 0.782 sum 0.913 -1.214 0.581 1.626 Atomic orbital electron populations 1.22467 0.95432 1.02590 1.02889 1.21534 0.93274 0.93236 0.85382 1.21769 1.01960 0.93276 1.02599 1.22468 1.02279 1.00878 0.97995 1.88030 1.73833 1.23356 1.42911 1.23587 0.95654 0.82735 0.97632 0.89016 1.23238 0.96439 0.97385 0.99488 1.22287 0.98217 0.98052 0.93981 0.87825 1.22757 0.87531 0.95081 0.94105 1.86047 1.41940 1.74173 1.21497 1.18108 0.96878 0.91540 0.83809 1.18387 1.00100 0.95289 0.93423 1.20977 0.97293 0.93812 0.99275 1.20935 0.99533 0.96755 0.96268 1.20960 0.98822 0.99837 0.93051 1.21066 0.98406 0.93155 1.00024 1.18020 0.98691 0.95113 0.92022 1.21033 0.98129 0.93577 0.99388 1.20518 1.00126 0.97097 0.94107 1.20356 1.03040 0.97808 0.93244 1.24950 0.87130 0.97721 1.07109 1.86563 1.20673 1.82690 1.43515 0.94991 0.85854 0.80478 0.80695 1.23564 0.99134 0.96203 0.99248 0.91679 0.91552 0.92233 0.91795 0.91057 0.91804 0.92222 0.91355 0.91636 0.89000 0.90472 0.92811 0.92537 0.85265 0.85663 0.85605 0.85077 0.84653 0.85010 0.87534 0.77755 1.18037 1.17702 0.90803 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.08 8.38 37.16 0.31 0.24 16 2 C 0.10 0.10 1.11 -90.62 -0.10 0.00 16 3 C -0.14 -0.06 8.84 37.16 0.33 0.27 16 4 C -0.18 0.01 8.38 37.15 0.31 0.32 16 5 O -0.36 -0.93 10.00 -35.23 -0.35 -1.28 16 6 C 0.06 0.06 2.82 -25.93 -0.07 -0.02 16 7 H 0.09 0.00 5.54 -51.92 -0.29 -0.28 16 8 C -0.13 -0.02 7.47 -25.92 -0.19 -0.21 16 9 C -0.11 -0.05 4.01 -89.81 -0.36 -0.41 16 10 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 11 C 0.08 0.11 5.63 37.15 0.21 0.32 16 12 O -0.32 -1.03 8.60 -19.12 -0.16 -1.19 16 13 C 0.14 0.43 5.67 -39.12 -0.22 0.20 16 14 C -0.07 -0.20 5.75 -106.72 -0.61 -0.82 16 15 C -0.10 -0.19 9.56 -39.52 -0.38 -0.56 16 16 C -0.12 -0.09 9.95 -39.92 -0.40 -0.48 16 17 C -0.11 -0.03 9.95 -39.93 -0.40 -0.42 16 18 C -0.11 -0.05 9.77 -39.48 -0.39 -0.43 16 19 C -0.04 -0.07 5.74 -106.84 -0.61 -0.68 16 20 C -0.10 -0.01 9.77 -39.46 -0.39 -0.40 16 21 C -0.10 0.00 8.56 -39.97 -0.34 -0.34 16 22 C -0.14 -0.25 5.24 -104.83 -0.55 -0.79 16 23 C -0.06 -0.08 2.32 36.00 0.08 0.00 16 24 O -0.53 -1.00 12.88 -35.23 -0.45 -1.45 16 25 Si 0.68 -0.09 29.86 -169.99 -5.08 -5.16 16 26 C -0.14 -0.19 7.46 -25.92 -0.19 -0.38 16 27 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.06 0.02 7.02 -51.93 -0.36 -0.34 16 30 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.06 -0.02 6.24 -51.93 -0.32 -0.35 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.06 0.02 8.14 -51.92 -0.42 -0.40 16 36 H 0.09 0.06 8.10 -51.92 -0.42 -0.36 16 37 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.05 0.08 6.74 -51.93 -0.35 -0.27 16 39 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.13 0.16 7.62 -52.49 -0.40 -0.24 16 41 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 42 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 43 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 44 H 0.14 -0.33 8.06 -52.48 -0.42 -0.76 16 45 H 0.13 -0.35 5.04 -52.49 -0.26 -0.61 16 46 H 0.11 0.25 6.43 -51.93 -0.33 -0.08 16 47 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 48 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 49 H -0.25 -0.76 7.11 56.52 0.40 -0.36 16 50 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 51 H 0.09 0.20 7.90 -51.93 -0.41 -0.21 16 LS Contribution 403.06 15.07 6.07 6.07 Total: 0.00 -6.12 403.06 -12.23 -18.35 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -8.30 Total: -10.74 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.96 Total: -4.61 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: -0.97 Total: -3.92 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: -5.08 Total: -5.16 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -6.12 -12.23 -18.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.798 kcal (2) G-P(sol) polarization free energy of solvation -6.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds