Wall clock time and date at job start Mon Mar 8 2021 16:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99872 * 2 1 3 5 5 O 1.42902 * 109.47001 * 120.00166 * 2 1 3 6 6 C 1.42896 * 114.00409 * 59.99603 * 5 2 1 7 7 H 1.09009 * 112.84727 * 18.80680 * 6 5 2 8 8 C 1.53775 * 113.61907 * 149.99774 * 6 5 2 9 9 C 1.53780 * 87.08291 * 139.98318 * 8 6 5 10 10 H 1.09000 * 113.61087 * 89.20345 * 9 8 6 11 11 C 1.52993 * 113.61724 * 220.02058 * 9 8 6 12 12 O 1.42910 * 109.47101 * 185.00158 * 11 9 8 13 13 C 1.35802 * 116.99710 * 180.02562 * 12 11 9 14 14 C 1.40964 * 120.22483 * 270.22217 * 13 12 11 15 15 C 1.40415 * 121.29657 * 0.02562 * 14 13 12 16 16 C 1.36135 * 119.66344 * 180.27025 * 15 14 13 17 17 C 1.39358 * 120.97920 * 359.97438 * 16 15 14 18 18 C 1.36107 * 120.97800 * 0.02562 * 17 16 15 19 19 C 1.40550 * 119.64680 * 359.97438 * 18 17 16 20 20 C 1.40530 * 121.26842 * 179.97438 * 19 18 17 21 21 C 1.36169 * 119.77197 * 180.02562 * 20 19 18 22 22 C 1.36666 * 120.23009 * 90.00119 * 13 12 11 23 23 C 1.50697 * 119.54153 * 0.02562 * 22 13 12 24 24 O 1.42905 * 109.46996 * 74.72355 * 23 22 13 25 25 Si 1.86301 * 109.47403 * 194.72618 * 23 22 13 26 26 C 1.53774 * 113.61874 * 247.50321 * 6 5 2 27 27 H 1.09000 * 109.47545 * 300.00738 * 1 2 3 28 28 H 1.09000 * 109.46839 * 59.99915 * 1 2 3 29 29 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46671 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47294 * 299.99807 * 3 2 1 32 32 H 1.08999 * 109.47040 * 60.00066 * 3 2 1 33 33 H 1.08997 * 109.47416 * 300.00172 * 4 2 1 34 34 H 1.08998 * 109.47551 * 60.00200 * 4 2 1 35 35 H 1.09007 * 109.47447 * 180.02562 * 4 2 1 36 36 H 1.09010 * 113.60815 * 25.43887 * 8 6 5 37 37 H 1.08992 * 113.69587 * 254.54812 * 8 6 5 38 38 H 1.09005 * 109.47007 * 65.00422 * 11 9 8 39 39 H 1.08996 * 109.47474 * 305.00156 * 11 9 8 40 40 H 1.07996 * 120.16432 * 0.23877 * 15 14 13 41 41 H 1.07998 * 119.50543 * 180.02562 * 16 15 14 42 42 H 1.07995 * 119.51399 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.17546 * 180.02562 * 18 17 16 44 44 H 1.08003 * 120.11425 * 0.04912 * 20 19 18 45 45 H 1.07997 * 119.47237 * 180.02562 * 21 20 19 46 46 H 1.09001 * 109.46613 * 314.72766 * 23 22 13 47 47 H 0.96696 * 114.00036 * 60.00342 * 24 23 22 48 48 H 1.48502 * 109.99925 * 58.67970 * 25 23 22 49 49 H 1.48497 * 109.99842 * 179.97438 * 25 23 22 50 50 H 1.09007 * 113.62045 * 105.46576 * 26 6 5 51 51 H 1.08999 * 113.61279 * 334.56200 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2646 7 1 1.2522 -2.4452 0.3107 8 6 2.5835 -2.9379 2.0078 9 6 1.3665 -3.6119 2.6632 10 1 0.9743 -4.4541 2.0931 11 6 1.5710 -3.9402 4.1434 12 8 0.4395 -4.6640 4.6315 13 6 0.4614 -5.0345 5.9379 14 6 1.0157 -6.2747 6.3145 15 6 1.5555 -7.1523 5.3606 16 6 2.0774 -8.3442 5.7607 17 6 2.0852 -8.7085 7.1058 18 6 1.5708 -7.8832 8.0581 19 6 1.0234 -6.6444 7.6825 20 6 0.4827 -5.7663 8.6371 21 6 -0.0404 -4.5737 8.2392 22 6 -0.0497 -4.2057 6.8968 23 6 -0.6383 -2.8780 6.4945 24 8 -1.9157 -3.0872 5.8890 25 14 -0.8347 -1.8030 8.0033 26 6 0.6075 -2.2962 2.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 3.2170 -2.3998 2.7131 37 1 3.1483 -3.5998 1.3514 38 1 1.6818 -3.0149 4.7089 39 1 2.4687 -4.5473 4.2604 40 1 1.5561 -6.8832 4.3147 41 1 2.4923 -9.0171 5.0249 42 1 2.5057 -9.6596 7.3970 43 1 1.5839 -8.1783 9.0969 44 1 0.4823 -6.0362 9.6829 45 1 -0.4543 -3.9024 8.9771 46 1 0.0254 -2.3873 5.7825 47 1 -2.5585 -3.5209 6.4666 48 1 0.4822 -1.6042 8.6602 49 1 -1.4138 -0.4904 7.6197 50 1 -0.4238 -2.4397 2.1006 51 1 0.7007 -1.5827 3.2418 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:09:47 Heat of formation + Delta-G solvation = -40.590729 kcal Electronic energy + Delta-G solvation = -30671.058984 eV Core-core repulsion = 26696.322607 eV Total energy + Delta-G solvation = -3974.736377 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.187 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.94512 -40.97505 -39.48911 -38.55002 -37.86502 -36.67367 -33.99213 -33.03257 -31.92664 -30.40900 -29.22048 -28.40441 -28.30085 -26.80798 -26.59221 -24.45663 -23.75764 -23.03743 -22.67328 -20.91587 -20.69525 -19.08911 -18.54345 -18.52251 -17.86251 -17.22746 -16.82088 -16.74744 -16.37595 -16.15651 -15.95071 -15.75799 -15.36726 -15.20250 -14.98127 -14.64228 -14.56774 -14.53007 -14.26024 -14.11709 -13.85528 -13.57956 -13.52832 -13.34427 -13.18816 -13.04139 -12.83330 -12.70927 -12.59164 -12.38933 -12.34886 -12.19716 -12.09686 -11.99986 -11.89931 -11.62965 -11.57318 -11.30799 -11.00299 -10.79447 -10.42664 -10.37676 -9.66589 -8.80315 -5.07849 -0.58175 -0.10855 0.89369 1.24146 1.59027 1.84272 1.90800 2.39934 2.72209 3.04824 3.39646 3.41604 3.51088 3.63148 3.70393 3.71953 3.75496 3.85559 3.88852 3.92921 3.98486 4.04675 4.08062 4.12952 4.16756 4.25260 4.30387 4.36558 4.36981 4.46882 4.48957 4.57435 4.60278 4.64684 4.69148 4.70466 4.73320 4.79681 4.86070 4.88411 4.91140 4.94638 5.03459 5.06567 5.08878 5.13554 5.14239 5.25254 5.27928 5.33076 5.33714 5.53897 5.55971 5.65390 5.95431 6.35475 6.44691 6.75186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.382 6.382 6 C 0.063 3.937 7 H 0.103 0.897 8 C -0.122 4.122 9 C -0.100 4.100 10 H 0.108 0.892 11 C 0.081 3.919 12 O -0.333 6.333 13 C 0.113 3.887 14 C -0.091 4.091 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.058 4.058 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.147 4.147 23 C -0.071 4.071 24 O -0.549 6.549 25 Si 0.782 3.218 26 C -0.145 4.145 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.088 0.912 47 H 0.392 0.608 48 H -0.282 1.282 49 H -0.297 1.297 50 H 0.068 0.932 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -2.904 2.159 3.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.196 4.196 4 C -0.233 4.233 5 O -0.302 6.302 6 C 0.006 3.994 7 H 0.121 0.879 8 C -0.160 4.160 9 C -0.118 4.118 10 H 0.126 0.874 11 C 0.007 3.993 12 O -0.251 6.251 13 C 0.069 3.931 14 C -0.091 4.091 15 C -0.135 4.135 16 C -0.136 4.136 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.058 4.058 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.180 4.180 24 O -0.356 6.356 25 Si 0.687 3.313 26 C -0.183 4.183 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.184 0.816 45 H 0.177 0.823 46 H 0.105 0.895 47 H 0.241 0.759 48 H -0.208 1.208 49 H -0.225 1.225 50 H 0.086 0.914 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.594 -1.811 2.028 2.783 hybrid contribution 0.343 -0.114 -0.849 0.923 sum 0.937 -1.926 1.179 2.444 Atomic orbital electron populations 1.22444 0.95180 1.02593 1.02912 1.21697 0.93549 0.93490 0.85404 1.21795 1.01736 0.93157 1.02926 1.22440 1.02012 1.01091 0.97774 1.88009 1.74165 1.24103 1.43893 1.23646 0.95564 0.82391 0.97820 0.87950 1.23196 0.96170 0.97235 0.99356 1.22247 0.98299 0.97707 0.93570 0.87387 1.22760 0.87467 0.94649 0.94419 1.86018 1.42548 1.74361 1.22145 1.18363 0.98423 0.92367 0.83915 1.18613 1.00632 0.95434 0.94421 1.21060 0.98591 0.94637 0.99208 1.21211 0.98776 0.96425 0.97233 1.21281 0.98762 1.00796 0.92743 1.21411 0.97465 0.92480 1.01377 1.18355 0.99352 0.96193 0.91890 1.21413 0.96680 0.92965 1.00562 1.20796 1.00219 0.97795 0.93716 1.20517 1.02707 0.97578 0.94014 1.25208 0.86778 0.98285 1.07770 1.86517 1.21234 1.83052 1.44818 0.93877 0.82670 0.76818 0.77965 1.23514 0.99104 0.96465 0.99176 0.92788 0.90351 0.92248 0.92141 0.89569 0.92639 0.91860 0.90270 0.92011 0.89656 0.89037 0.93612 0.92240 0.85663 0.84093 0.83409 0.82577 0.81630 0.82314 0.89486 0.75890 1.20806 1.22515 0.91364 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.27 8.38 71.98 0.60 0.34 16 2 C 0.10 0.25 1.11 -10.80 -0.01 0.24 16 3 C -0.14 -0.21 8.84 71.98 0.64 0.43 16 4 C -0.18 0.04 8.38 71.98 0.60 0.64 16 5 O -0.38 -2.45 10.00 -148.98 -1.49 -3.94 16 6 C 0.06 0.19 2.82 31.12 0.09 0.28 16 7 H 0.10 0.06 5.54 -2.38 -0.01 0.05 16 8 C -0.12 -0.17 7.47 31.12 0.23 0.06 16 9 C -0.10 -0.28 4.01 -10.27 -0.04 -0.32 16 10 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 11 C 0.08 0.41 5.63 71.98 0.41 0.82 16 12 O -0.33 -2.97 8.60 -91.33 -0.79 -3.75 16 13 C 0.11 0.89 5.67 22.57 0.13 1.02 16 14 C -0.09 -0.63 5.75 -21.23 -0.12 -0.75 16 15 C -0.12 -0.62 9.56 22.31 0.21 -0.41 16 16 C -0.12 -0.21 9.95 22.05 0.22 0.01 16 17 C -0.12 0.03 9.95 22.04 0.22 0.25 16 18 C -0.11 0.02 9.77 22.34 0.22 0.24 16 19 C -0.06 -0.19 5.74 -21.30 -0.12 -0.31 16 20 C -0.10 0.09 9.77 22.35 0.22 0.31 16 21 C -0.11 0.06 8.56 22.02 0.19 0.24 16 22 C -0.15 -0.66 5.24 -20.00 -0.10 -0.76 16 23 C -0.07 -0.30 2.32 71.23 0.17 -0.13 16 24 O -0.55 -2.84 12.88 -148.98 -1.92 -4.76 16 25 Si 0.78 0.03 29.86 68.60 2.05 2.08 16 26 C -0.14 -0.69 7.46 31.12 0.23 -0.46 16 27 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.06 0.09 7.02 -2.39 -0.02 0.07 16 30 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.09 -0.16 8.14 -2.39 -0.02 -0.17 16 32 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.06 -0.06 6.24 -2.39 -0.01 -0.08 16 34 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.08 0.24 8.10 -2.38 -0.02 0.23 16 37 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.05 0.28 6.74 -2.38 -0.02 0.26 16 39 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.13 0.59 7.62 -2.91 -0.02 0.57 16 41 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 42 H 0.15 -0.78 8.06 -2.91 -0.02 -0.81 16 43 H 0.16 -0.93 8.06 -2.91 -0.02 -0.96 16 44 H 0.17 -1.26 8.06 -2.91 -0.02 -1.28 16 45 H 0.16 -1.10 5.04 -2.91 -0.01 -1.12 16 46 H 0.09 0.66 6.43 -2.39 -0.02 0.65 16 47 H 0.39 -1.33 8.70 -74.06 -0.64 -1.97 16 48 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 49 H -0.30 -2.20 7.11 99.48 0.71 -1.50 16 50 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 51 H 0.07 0.56 7.90 -2.39 -0.02 0.54 16 Total: 0.00 -16.40 403.06 2.13 -14.27 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 0.31 Total: -5.63 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 3.97 Total: 1.74 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -4.19 Total: -12.45 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.05 Total: 2.08 kcal Total: -16.40 2.13 -14.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.325 kcal (2) G-P(sol) polarization free energy of solvation -16.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds