Wall clock time and date at job start Mon Mar 8 2021 12:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47089 * 2 1 4 4 C 1.52997 * 109.47065 * 240.00395 * 2 1 3 5 5 O 1.45201 * 109.47418 * 120.00389 * 2 1 3 6 6 C 1.34631 * 117.00188 * 59.99956 * 5 2 1 7 7 O 1.21520 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00267 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00033 * 180.02562 * 8 6 5 10 10 H 1.08992 * 112.90684 * 336.24748 * 9 8 6 11 11 C 1.54049 * 113.61276 * 107.61836 * 9 8 6 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.52991 * 113.61611 * 139.97702 * 12 11 9 15 15 O 1.42901 * 109.47409 * 87.50203 * 14 12 11 16 16 C 1.35804 * 117.00214 * 180.02562 * 15 14 12 17 17 C 1.40969 * 120.22699 * 269.72469 * 16 15 14 18 18 C 1.40410 * 121.29410 * 0.55730 * 17 16 15 19 19 C 1.36134 * 119.66535 * 179.73319 * 18 17 16 20 20 C 1.39362 * 120.97516 * 359.67612 * 19 18 17 21 21 C 1.36099 * 120.97966 * 0.05357 * 20 19 18 22 22 C 1.40558 * 119.64865 * 359.97071 * 21 20 19 23 23 C 1.40512 * 121.26625 * 179.97438 * 22 21 20 24 24 C 1.36180 * 119.76964 * 179.97438 * 23 22 21 25 25 C 1.36670 * 120.23225 * 90.00095 * 16 15 14 26 26 C 1.50702 * 119.53703 * 359.97438 * 25 16 15 27 27 O 1.42902 * 109.47244 * 285.00525 * 26 25 16 28 28 Si 1.86294 * 109.47175 * 164.99902 * 26 25 16 29 29 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 30 30 H 1.09004 * 109.47003 * 299.99653 * 1 2 3 31 31 H 1.08993 * 109.47763 * 59.99425 * 1 2 3 32 32 H 1.09000 * 109.46934 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47374 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47757 * 300.00678 * 3 2 1 35 35 H 1.09005 * 109.47431 * 60.00394 * 3 2 1 36 36 H 1.09001 * 109.47283 * 299.99987 * 4 2 1 37 37 H 1.09005 * 109.47057 * 59.99373 * 4 2 1 38 38 H 1.08995 * 109.47902 * 179.97438 * 4 2 1 39 39 H 0.97002 * 120.00078 * 359.97438 * 8 6 5 40 40 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 41 41 H 1.08996 * 113.68970 * 203.62749 * 11 9 8 42 42 H 1.08997 * 109.47550 * 207.50008 * 14 12 11 43 43 H 1.09002 * 109.47334 * 327.50277 * 14 12 11 44 44 H 1.08000 * 120.17068 * 359.45113 * 18 17 16 45 45 H 1.08001 * 119.51526 * 179.70420 * 19 18 17 46 46 H 1.08002 * 119.51008 * 180.02562 * 20 19 18 47 47 H 1.07998 * 120.17696 * 179.97438 * 21 20 19 48 48 H 1.08001 * 120.12018 * 0.02562 * 23 22 21 49 49 H 1.07997 * 119.47331 * 180.02562 * 24 23 22 50 50 H 1.09004 * 109.46731 * 44.99836 * 26 25 16 51 51 H 0.96705 * 113.99453 * 299.99617 * 27 26 25 52 52 H 1.48506 * 110.00049 * 179.97438 * 28 26 25 53 53 H 1.48496 * 110.00212 * 301.32337 * 28 26 25 54 54 H 1.09002 * 113.61445 * 89.11830 * 29 12 11 55 55 H 1.09002 * 113.61408 * 219.93560 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6742 -4.0670 2.5828 10 1 0.7609 -4.3181 2.0436 11 6 2.8257 -5.0629 2.3476 12 6 3.1501 -4.9201 3.8440 13 1 3.8454 -4.1103 4.0647 14 6 3.5393 -6.2387 4.5153 15 8 4.9453 -6.4496 4.3715 16 6 5.4574 -7.5838 4.9152 17 6 5.9261 -7.5847 6.2447 18 6 5.8666 -6.4288 7.0397 19 6 6.3237 -6.4684 8.3214 20 6 6.8451 -7.6428 8.8610 21 6 6.9133 -8.7835 8.1218 22 6 6.4512 -8.7805 6.7943 23 6 6.5060 -9.9386 6.0005 24 6 6.0493 -9.9014 4.7181 25 6 5.5273 -8.7308 4.1754 26 6 5.0315 -8.7283 2.7522 27 8 3.6025 -8.7293 2.7456 28 14 5.6577 -10.2472 1.8738 29 6 1.6744 -4.5377 4.0469 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.6270 -2.2367 3.0832 40 1 3.6081 -4.6792 1.6927 41 1 2.4907 -6.0614 2.0668 42 1 3.2848 -6.1963 5.5743 43 1 2.9987 -7.0597 4.0443 44 1 5.4645 -5.5118 6.6350 45 1 6.2812 -5.5767 8.9292 46 1 7.2007 -7.6476 9.8808 47 1 7.3202 -9.6862 8.5529 48 1 6.9081 -10.8552 6.4061 49 1 6.0933 -10.7944 4.1123 50 1 5.3965 -7.8370 2.2419 51 1 3.2077 -9.4956 3.1840 52 1 5.1751 -10.2569 0.4694 53 1 7.1421 -10.2742 1.9015 54 1 1.0232 -5.3922 4.2309 55 1 1.5272 -3.7309 4.7649 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_15734082.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:41:55 Heat of formation + Delta-G solvation = -73.079708 kcal Electronic energy + Delta-G solvation = -36339.931911 eV Core-core repulsion = 31695.914844 eV Total energy + Delta-G solvation = -4644.017067 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.03963 -41.83599 -40.51469 -39.23672 -38.20589 -37.78638 -36.67550 -35.41283 -34.17059 -32.99267 -31.88412 -30.36986 -28.96582 -28.41709 -28.34650 -26.80692 -26.65544 -24.71554 -24.29421 -23.18551 -23.01426 -22.59802 -21.21792 -20.31283 -19.39776 -19.00974 -18.52114 -18.48511 -17.67070 -17.27432 -17.07927 -16.94506 -16.60142 -16.36425 -16.15217 -15.84151 -15.67463 -15.46258 -15.42894 -15.13972 -14.79291 -14.64683 -14.53645 -14.48686 -14.36806 -13.93697 -13.70969 -13.69229 -13.45946 -13.39504 -13.30076 -13.08606 -12.96649 -12.91751 -12.57166 -12.53041 -12.38082 -12.27913 -12.10413 -12.04532 -12.02095 -11.74853 -11.63673 -11.45112 -11.38992 -11.17434 -10.78736 -10.73678 -10.39969 -10.22594 -9.63881 -8.77017 -5.03973 -0.54969 -0.08171 0.92422 1.07583 1.28829 1.63670 1.66588 1.87312 1.96246 2.54620 3.05639 3.08039 3.40466 3.46279 3.52402 3.65036 3.69383 3.73131 3.74055 3.78605 3.84391 3.89587 3.92529 4.02432 4.17027 4.32741 4.34389 4.36098 4.40068 4.42577 4.43924 4.52956 4.56671 4.58169 4.62628 4.67051 4.71592 4.73882 4.75485 4.78730 4.82917 4.84758 4.93649 4.98105 5.03484 5.04916 5.06599 5.12331 5.16267 5.16883 5.22400 5.27863 5.36925 5.44285 5.55868 5.56850 5.58533 5.68954 5.97416 6.31912 6.53566 6.76958 7.27103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.140 4.140 12 C -0.102 4.102 13 H 0.096 0.904 14 C 0.077 3.923 15 O -0.345 6.345 16 C 0.118 3.882 17 C -0.091 4.091 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.057 4.057 23 C -0.103 4.103 24 C -0.106 4.106 25 C -0.147 4.147 26 C -0.064 4.064 27 O -0.545 6.545 28 Si 0.783 3.217 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.416 0.584 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.163 0.837 49 H 0.158 0.842 50 H 0.092 0.908 51 H 0.393 0.607 52 H -0.300 1.300 53 H -0.291 1.291 54 H 0.116 0.884 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -2.904 5.960 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.179 4.179 12 C -0.121 4.121 13 H 0.114 0.886 14 C 0.004 3.996 15 O -0.263 6.263 16 C 0.074 3.926 17 C -0.091 4.091 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.057 4.057 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.174 4.174 27 O -0.353 6.353 28 Si 0.689 3.311 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.144 0.856 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.172 0.828 48 H 0.180 0.820 49 H 0.175 0.825 50 H 0.110 0.890 51 H 0.243 0.757 52 H -0.228 1.228 53 H -0.219 1.219 54 H 0.134 0.866 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.146 -2.681 4.432 5.182 hybrid contribution 0.427 0.984 0.162 1.085 sum 0.573 -1.697 4.594 4.931 Atomic orbital electron populations 1.22470 0.93832 1.03736 1.03631 1.22372 0.94629 0.92568 0.81367 1.21894 1.02386 0.90807 1.04369 1.22479 1.01515 1.02263 0.97534 1.86309 1.71562 1.23213 1.47384 1.18302 0.78586 0.80739 0.82406 1.90906 1.42243 1.71046 1.44084 1.44379 1.54934 1.11848 1.23144 1.21887 0.98423 0.78010 0.98893 0.88581 1.23531 0.97822 1.00085 0.96437 1.22557 0.97303 0.96764 0.95452 0.88615 1.23000 0.78651 0.98196 0.99800 1.85885 1.24831 1.38463 1.77082 1.18315 0.97410 0.86357 0.90495 1.18606 1.01832 0.95098 0.93608 1.21058 1.00251 0.97402 0.94596 1.21202 0.97930 0.99377 0.95325 1.21266 0.98497 0.92614 1.01262 1.21398 0.99170 0.99952 0.92387 1.18338 0.98997 0.93053 0.95339 1.21382 0.98863 0.98143 0.93630 1.20795 0.98629 0.96771 0.96155 1.20480 1.03084 0.93512 0.97669 1.25044 0.85668 1.10857 0.95834 1.86471 1.16698 1.50805 1.81352 0.94017 0.77659 0.81697 0.77735 1.23281 0.94996 1.02629 0.94514 0.91794 0.89345 0.91799 0.91323 0.88179 0.91039 0.91891 0.89288 0.92169 0.74744 0.92912 0.88239 0.92868 0.90221 0.85578 0.84198 0.83588 0.82796 0.81957 0.82459 0.89011 0.75696 1.22821 1.21859 0.86617 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 8.37 71.98 0.60 -0.19 16 2 C 0.13 0.58 1.13 -10.80 -0.01 0.57 16 3 C -0.14 0.10 8.85 71.98 0.64 0.74 16 4 C -0.18 -0.95 8.37 71.98 0.60 -0.35 16 5 O -0.37 -2.79 9.94 -55.40 -0.55 -3.34 16 6 C 0.65 5.82 8.06 129.79 1.05 6.87 16 7 O -0.59 -8.44 11.48 19.78 0.23 -8.21 16 8 N -0.68 -2.06 5.27 -567.17 -2.99 -5.05 16 9 C 0.13 0.20 4.34 45.61 0.20 0.40 16 10 H 0.10 0.45 7.46 -2.39 -0.02 0.43 16 11 C -0.14 -0.34 7.44 31.21 0.23 -0.11 16 12 C -0.10 0.08 3.89 -10.27 -0.04 0.04 16 13 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 14 C 0.08 0.09 5.83 71.98 0.42 0.51 16 15 O -0.34 -2.16 8.52 -91.36 -0.78 -2.94 16 16 C 0.12 0.67 5.67 22.57 0.13 0.80 16 17 C -0.09 -0.49 5.75 -21.23 -0.12 -0.61 16 18 C -0.12 -0.46 9.56 22.31 0.21 -0.25 16 19 C -0.12 -0.11 9.95 22.05 0.22 0.11 16 20 C -0.12 0.10 9.95 22.04 0.22 0.32 16 21 C -0.11 0.08 9.77 22.34 0.22 0.30 16 22 C -0.06 -0.13 5.74 -21.30 -0.12 -0.26 16 23 C -0.10 0.18 9.77 22.34 0.22 0.40 16 24 C -0.11 0.20 8.56 22.02 0.19 0.39 16 25 C -0.15 -0.33 5.24 -20.00 -0.10 -0.43 16 26 C -0.06 -0.09 2.32 71.24 0.17 0.08 16 27 O -0.55 0.41 10.71 -148.98 -1.60 -1.19 16 28 Si 0.78 -0.92 29.86 68.60 2.05 1.13 16 29 C -0.12 0.45 7.38 31.12 0.23 0.68 16 30 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 0.63 5.88 -2.39 -0.01 0.61 16 33 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.06 0.68 5.88 -2.39 -0.01 0.67 16 37 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 38 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.42 -0.51 8.81 -92.71 -0.82 -1.33 16 40 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.10 0.29 7.89 -2.39 -0.02 0.27 16 42 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.08 0.07 5.63 -2.39 -0.01 0.06 16 44 H 0.13 0.41 7.62 -2.91 -0.02 0.38 16 45 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.15 -0.82 8.06 -2.91 -0.02 -0.84 16 47 H 0.15 -0.95 8.06 -2.91 -0.02 -0.98 16 48 H 0.16 -1.29 8.06 -2.91 -0.02 -1.32 16 49 H 0.16 -1.26 5.04 -2.91 -0.01 -1.28 16 50 H 0.09 0.56 7.78 -2.38 -0.02 0.54 16 51 H 0.39 -3.55 8.70 -74.05 -0.64 -4.19 16 52 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 53 H -0.29 -1.33 7.11 99.48 0.71 -0.63 16 54 H 0.12 -0.71 8.10 -2.39 -0.02 -0.72 16 55 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: 0.00 -20.93 436.52 0.99 -19.94 By element: Atomic # 1 Polarization: -9.83 SS G_CDS: -0.51 Total: -10.33 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.14 Total: 10.00 kcal Atomic # 7 Polarization: -2.06 SS G_CDS: -2.99 Total: -5.05 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -2.70 Total: -15.68 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.05 Total: 1.13 kcal Total: -20.93 0.99 -19.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_15734082.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.140 kcal (2) G-P(sol) polarization free energy of solvation -20.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds