Wall clock time and date at job start Mon Mar 8 2021 13:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86306 * 109.46996 * 2 1 4 4 C 1.50694 * 109.47744 * 239.99660 * 2 1 3 5 5 C 1.36630 * 119.53550 * 285.26840 * 4 2 1 6 6 O 1.35806 * 120.23280 * 0.02562 * 5 4 2 7 7 C 1.42898 * 116.99852 * 270.24527 * 6 5 4 8 8 C 1.53002 * 109.46929 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.46727 * 304.99730 * 8 7 6 10 10 C 1.53000 * 109.47251 * 64.99611 * 8 7 6 11 11 C 1.52998 * 109.46962 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.47030 * 300.00079 * 11 10 8 13 13 H 1.09003 * 109.46899 * 300.00136 * 12 11 10 14 14 O 1.42898 * 109.46922 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47313 * 60.00136 * 12 11 10 16 16 C 1.52994 * 109.46911 * 184.99717 * 8 7 6 17 17 C 1.41010 * 119.53752 * 180.24393 * 5 4 2 18 18 C 1.40378 * 121.28548 * 179.78616 * 17 5 4 19 19 C 1.36168 * 119.66127 * 179.97438 * 18 17 5 20 20 C 1.39317 * 120.97302 * 359.97438 * 19 18 17 21 21 C 1.36135 * 120.97682 * 0.02995 * 20 19 18 22 22 C 1.40510 * 119.64717 * 359.94784 * 21 20 19 23 23 C 1.40567 * 121.27561 * 180.02562 * 22 21 20 24 24 C 1.36138 * 119.77331 * 179.97438 * 23 22 21 25 25 H 0.96703 * 113.99356 * 60.00456 * 1 2 3 26 26 H 1.08997 * 109.46886 * 119.99205 * 2 1 3 27 27 H 1.48494 * 110.00093 * 59.99834 * 3 2 1 28 28 H 1.48503 * 109.99899 * 181.31500 * 3 2 1 29 29 H 1.09000 * 109.46960 * 299.99348 * 7 6 5 30 30 H 1.08994 * 109.47512 * 59.99607 * 7 6 5 31 31 H 1.08995 * 109.47091 * 299.99868 * 10 8 7 32 32 H 1.08997 * 109.47158 * 60.00383 * 10 8 7 33 33 H 1.09003 * 109.47166 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47390 * 59.99914 * 11 10 8 35 35 H 0.96705 * 114.00235 * 60.00382 * 14 12 11 36 36 H 1.08995 * 109.47091 * 180.02562 * 15 12 11 37 37 H 1.08997 * 109.47158 * 59.99695 * 15 12 11 38 38 H 1.08997 * 109.47435 * 299.99579 * 16 8 7 39 39 H 1.09007 * 109.47379 * 59.99568 * 16 8 7 40 40 H 1.07998 * 120.16413 * 359.97438 * 18 17 5 41 41 H 1.07998 * 119.51458 * 179.97438 * 19 18 17 42 42 H 1.08002 * 119.50892 * 180.02562 * 20 19 18 43 43 H 1.07993 * 120.17722 * 179.97438 * 21 20 19 44 44 H 1.08008 * 120.11325 * 359.95849 * 23 22 21 45 45 H 1.08002 * 119.46624 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 1.8609 -2.0733 -1.2972 6 8 1.3412 -2.7827 -0.2623 7 6 2.2497 -3.2025 0.7576 8 6 1.4871 -3.9826 1.8304 9 1 0.6637 -3.3747 2.2052 10 6 0.9333 -5.2740 1.2250 11 6 0.1702 -6.0537 2.2976 12 6 1.1169 -6.3956 3.4500 13 1 1.9404 -7.0037 3.0755 14 8 0.4043 -7.1244 4.4515 15 6 1.6707 -5.1042 4.0554 16 6 2.4342 -4.3245 2.9823 17 6 2.3359 -2.7384 -2.4462 18 6 2.2853 -4.1373 -2.5520 19 6 2.7528 -4.7454 -3.6771 20 6 3.2815 -3.9995 -4.7283 21 6 3.3464 -2.6414 -4.6605 22 6 2.8731 -1.9792 -3.5152 23 6 2.9231 -0.5784 -3.4092 24 6 2.4554 0.0316 -2.2856 25 1 -0.3932 0.4417 -0.7651 26 1 1.7923 -0.5137 0.8900 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7704 -0.0320 29 1 3.0167 -3.8418 0.3203 30 1 2.7192 -2.3282 1.2084 31 1 0.2586 -5.0303 0.4044 32 1 1.7567 -5.8819 0.8502 33 1 -0.2240 -6.9740 1.8664 34 1 -0.6533 -5.4456 2.6721 35 1 0.0250 -7.9566 4.1373 36 1 2.3454 -5.3478 4.8760 37 1 0.8473 -4.4961 4.4298 38 1 3.2576 -4.9324 2.6075 39 1 2.8289 -3.4044 3.4136 40 1 1.8777 -4.7281 -1.7450 41 1 2.7131 -5.8218 -3.7557 42 1 3.6452 -4.5063 -5.6099 43 1 3.7592 -2.0760 -5.4828 44 1 3.3315 0.0119 -4.2162 45 1 2.4966 1.1081 -2.2092 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_16737254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:22:49 Heat of formation + Delta-G solvation = -87.543293 kcal Electronic energy + Delta-G solvation = -26932.107745 eV Core-core repulsion = 23266.410591 eV Total energy + Delta-G solvation = -3665.697155 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91703 -40.30201 -39.23048 -38.20163 -36.79264 -36.52677 -33.16293 -31.94484 -31.85550 -31.69866 -29.94211 -27.09780 -26.09916 -24.45471 -23.80343 -23.02080 -22.73992 -22.26791 -20.89270 -19.05873 -18.51053 -18.46921 -18.19467 -17.21442 -16.77388 -16.68663 -16.35531 -15.92230 -15.67841 -15.53177 -15.39824 -15.03603 -14.71951 -14.68051 -14.51327 -14.29922 -14.10054 -13.84300 -13.58536 -13.47301 -13.25380 -13.20241 -12.61420 -12.42889 -12.26684 -12.18975 -12.05043 -11.97629 -11.91466 -11.67537 -11.51253 -11.18988 -10.97918 -10.78888 -10.68943 -10.30795 -9.65123 -8.79594 -5.05887 -0.57060 -0.09388 0.91720 1.27761 1.62450 1.83042 1.95858 2.50430 3.06110 3.16731 3.43894 3.58015 3.63687 3.67504 3.70157 3.77718 3.84921 3.94125 4.05020 4.09877 4.12393 4.22749 4.27506 4.28408 4.30818 4.32301 4.36797 4.42932 4.45701 4.47318 4.53678 4.68609 4.77067 4.89432 4.92939 4.98428 5.03058 5.07730 5.09303 5.10973 5.13289 5.13710 5.30269 5.33386 5.40504 5.52991 5.56015 5.62120 5.91913 6.52688 6.63968 6.70688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.059 4.059 3 Si 0.679 3.321 4 C -0.144 4.144 5 C 0.141 3.859 6 O -0.319 6.319 7 C 0.070 3.930 8 C -0.087 4.087 9 H 0.086 0.914 10 C -0.109 4.109 11 C -0.152 4.152 12 C 0.103 3.897 13 H 0.054 0.946 14 O -0.569 6.569 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.071 4.071 18 C -0.096 4.096 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.038 4.038 23 C -0.103 4.103 24 C -0.101 4.101 25 H 0.376 0.624 26 H 0.107 0.893 27 H -0.252 1.252 28 H -0.256 1.256 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 0.245 -4.159 4.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.145 4.145 5 C 0.097 3.903 6 O -0.236 6.236 7 C -0.004 4.004 8 C -0.105 4.105 9 H 0.104 0.896 10 C -0.147 4.147 11 C -0.190 4.190 12 C 0.045 3.955 13 H 0.072 0.928 14 O -0.375 6.375 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.071 4.071 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.038 4.038 23 C -0.121 4.121 24 C -0.119 4.119 25 H 0.223 0.777 26 H 0.124 0.876 27 H -0.177 1.177 28 H -0.180 1.180 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.381 0.987 -2.760 3.776 hybrid contribution 0.134 -1.097 -0.343 1.157 sum 2.515 -0.110 -3.104 3.996 Atomic orbital electron populations 1.86563 1.16579 1.81630 1.48755 1.24954 0.85709 1.09388 0.96923 0.94915 0.81223 0.78230 0.87533 1.20356 1.02291 0.93909 0.97926 1.18105 0.95344 0.89103 0.87794 1.86034 1.34193 1.71795 1.31554 1.22844 0.91826 0.97757 0.87939 1.21210 0.98824 0.96633 0.93857 0.89571 1.21493 1.00070 0.95102 0.98013 1.22279 0.99311 1.00967 0.96416 1.21840 0.93044 0.92921 0.87729 0.92805 1.86519 1.73859 1.38253 1.38865 1.21445 1.00409 0.94985 0.98009 1.21491 0.97810 1.00540 0.94956 1.18376 1.00039 0.94151 0.94565 1.20981 0.98776 0.93113 0.98519 1.20933 0.98525 1.00396 0.93625 1.20959 0.98650 0.94220 0.98825 1.21066 0.99703 0.94850 0.97024 1.18017 0.98493 0.93404 0.93917 1.21040 0.99701 0.93145 0.98223 1.20518 0.98971 0.99130 0.93235 0.77683 0.87555 1.17721 1.18050 0.92655 0.92966 0.90617 0.91947 0.91563 0.90893 0.77414 0.90905 0.90917 0.91377 0.90957 0.85274 0.85686 0.85604 0.85075 0.84647 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.86 12.88 -35.23 -0.45 -1.32 16 2 C -0.06 -0.05 2.32 36.00 0.08 0.03 16 3 Si 0.68 -0.37 29.86 -169.99 -5.08 -5.44 16 4 C -0.14 -0.18 5.24 -104.84 -0.55 -0.73 16 5 C 0.14 0.36 5.67 -39.11 -0.22 0.13 16 6 O -0.32 -0.82 8.14 -19.13 -0.16 -0.98 16 7 C 0.07 0.04 5.17 37.16 0.19 0.24 16 8 C -0.09 0.00 2.43 -90.62 -0.22 -0.22 16 9 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 10 C -0.11 0.03 5.10 -26.73 -0.14 -0.11 16 11 C -0.15 0.03 5.55 -26.73 -0.15 -0.12 16 12 C 0.10 0.04 3.47 -26.73 -0.09 -0.06 16 13 H 0.05 -0.01 8.14 -51.93 -0.42 -0.44 16 14 O -0.57 -0.91 13.32 -35.23 -0.47 -1.38 16 15 C -0.11 -0.05 5.58 -26.70 -0.15 -0.20 16 16 C -0.11 0.08 5.21 -26.71 -0.14 -0.06 16 17 C -0.07 -0.17 5.75 -106.72 -0.61 -0.78 16 18 C -0.10 -0.14 9.56 -39.52 -0.38 -0.52 16 19 C -0.12 -0.04 9.95 -39.92 -0.40 -0.44 16 20 C -0.11 0.01 9.95 -39.94 -0.40 -0.39 16 21 C -0.11 -0.02 9.77 -39.48 -0.39 -0.40 16 22 C -0.04 -0.05 5.74 -106.84 -0.61 -0.67 16 23 C -0.10 0.02 9.77 -39.46 -0.39 -0.36 16 24 C -0.10 0.03 8.56 -39.97 -0.34 -0.31 16 25 H 0.38 -0.85 8.70 45.56 0.40 -0.45 16 26 H 0.11 0.18 6.40 -51.93 -0.33 -0.15 16 27 H -0.25 -0.67 7.11 56.52 0.40 -0.27 16 28 H -0.26 -0.43 7.11 56.52 0.40 -0.03 16 29 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.05 0.02 7.01 -51.93 -0.36 -0.34 16 31 H 0.08 0.06 7.82 -51.93 -0.41 -0.35 16 32 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.38 -0.87 9.08 45.56 0.41 -0.45 16 36 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.07 -0.08 8.14 -51.92 -0.42 -0.50 16 40 H 0.13 0.10 7.62 -52.49 -0.40 -0.30 16 41 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 42 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 43 H 0.13 -0.27 8.06 -52.49 -0.42 -0.70 16 44 H 0.14 -0.37 8.06 -52.48 -0.42 -0.79 16 45 H 0.13 -0.39 5.04 -52.49 -0.26 -0.66 16 LS Contribution 358.49 15.07 5.40 5.40 Total: 0.00 -6.95 358.49 -11.72 -18.67 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: -6.07 Total: -9.98 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -4.89 Total: -4.97 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: -1.08 Total: -3.67 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.08 Total: -5.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -6.95 -11.72 -18.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_16737254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.874 kcal (2) G-P(sol) polarization free energy of solvation -6.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds