Wall clock time and date at job start Mon Mar 8 2021 13:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86306 * 109.46996 * 2 1 4 4 C 1.50694 * 109.47744 * 239.99660 * 2 1 3 5 5 C 1.36630 * 119.53550 * 285.26840 * 4 2 1 6 6 O 1.35806 * 120.23280 * 0.02562 * 5 4 2 7 7 C 1.42898 * 116.99852 * 270.24527 * 6 5 4 8 8 C 1.53002 * 109.46929 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.46727 * 304.99730 * 8 7 6 10 10 C 1.53000 * 109.47251 * 64.99611 * 8 7 6 11 11 C 1.52998 * 109.46962 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.47030 * 300.00079 * 11 10 8 13 13 H 1.09003 * 109.46899 * 300.00136 * 12 11 10 14 14 O 1.42898 * 109.46922 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47313 * 60.00136 * 12 11 10 16 16 C 1.52994 * 109.46911 * 184.99717 * 8 7 6 17 17 C 1.41010 * 119.53752 * 180.24393 * 5 4 2 18 18 C 1.40378 * 121.28548 * 179.78616 * 17 5 4 19 19 C 1.36168 * 119.66127 * 179.97438 * 18 17 5 20 20 C 1.39317 * 120.97302 * 359.97438 * 19 18 17 21 21 C 1.36135 * 120.97682 * 0.02995 * 20 19 18 22 22 C 1.40510 * 119.64717 * 359.94784 * 21 20 19 23 23 C 1.40567 * 121.27561 * 180.02562 * 22 21 20 24 24 C 1.36138 * 119.77331 * 179.97438 * 23 22 21 25 25 H 0.96703 * 113.99356 * 60.00456 * 1 2 3 26 26 H 1.08997 * 109.46886 * 119.99205 * 2 1 3 27 27 H 1.48494 * 110.00093 * 59.99834 * 3 2 1 28 28 H 1.48503 * 109.99899 * 181.31500 * 3 2 1 29 29 H 1.09000 * 109.46960 * 299.99348 * 7 6 5 30 30 H 1.08994 * 109.47512 * 59.99607 * 7 6 5 31 31 H 1.08995 * 109.47091 * 299.99868 * 10 8 7 32 32 H 1.08997 * 109.47158 * 60.00383 * 10 8 7 33 33 H 1.09003 * 109.47166 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47390 * 59.99914 * 11 10 8 35 35 H 0.96705 * 114.00235 * 60.00382 * 14 12 11 36 36 H 1.08995 * 109.47091 * 180.02562 * 15 12 11 37 37 H 1.08997 * 109.47158 * 59.99695 * 15 12 11 38 38 H 1.08997 * 109.47435 * 299.99579 * 16 8 7 39 39 H 1.09007 * 109.47379 * 59.99568 * 16 8 7 40 40 H 1.07998 * 120.16413 * 359.97438 * 18 17 5 41 41 H 1.07998 * 119.51458 * 179.97438 * 19 18 17 42 42 H 1.08002 * 119.50892 * 180.02562 * 20 19 18 43 43 H 1.07993 * 120.17722 * 179.97438 * 21 20 19 44 44 H 1.08008 * 120.11325 * 359.95849 * 23 22 21 45 45 H 1.08002 * 119.46624 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 1.8609 -2.0733 -1.2972 6 8 1.3412 -2.7827 -0.2623 7 6 2.2497 -3.2025 0.7576 8 6 1.4871 -3.9826 1.8304 9 1 0.6637 -3.3747 2.2052 10 6 0.9333 -5.2740 1.2250 11 6 0.1702 -6.0537 2.2976 12 6 1.1169 -6.3956 3.4500 13 1 1.9404 -7.0037 3.0755 14 8 0.4043 -7.1244 4.4515 15 6 1.6707 -5.1042 4.0554 16 6 2.4342 -4.3245 2.9823 17 6 2.3359 -2.7384 -2.4462 18 6 2.2853 -4.1373 -2.5520 19 6 2.7528 -4.7454 -3.6771 20 6 3.2815 -3.9995 -4.7283 21 6 3.3464 -2.6414 -4.6605 22 6 2.8731 -1.9792 -3.5152 23 6 2.9231 -0.5784 -3.4092 24 6 2.4554 0.0316 -2.2856 25 1 -0.3932 0.4417 -0.7651 26 1 1.7923 -0.5137 0.8900 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7704 -0.0320 29 1 3.0167 -3.8418 0.3203 30 1 2.7192 -2.3282 1.2084 31 1 0.2586 -5.0303 0.4044 32 1 1.7567 -5.8819 0.8502 33 1 -0.2240 -6.9740 1.8664 34 1 -0.6533 -5.4456 2.6721 35 1 0.0250 -7.9566 4.1373 36 1 2.3454 -5.3478 4.8760 37 1 0.8473 -4.4961 4.4298 38 1 3.2576 -4.9324 2.6075 39 1 2.8289 -3.4044 3.4136 40 1 1.8777 -4.7281 -1.7450 41 1 2.7131 -5.8218 -3.7557 42 1 3.6452 -4.5063 -5.6099 43 1 3.7592 -2.0760 -5.4828 44 1 3.3315 0.0119 -4.2162 45 1 2.4966 1.1081 -2.2092 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_16737254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:22:48 Heat of formation + Delta-G solvation = -83.898795 kcal Electronic energy + Delta-G solvation = -26931.949708 eV Core-core repulsion = 23266.410591 eV Total energy + Delta-G solvation = -3665.539117 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92949 -40.33473 -39.26211 -38.25939 -36.84453 -36.55696 -33.16888 -31.95774 -31.88127 -31.73552 -29.93559 -27.14135 -26.14297 -24.43769 -23.82181 -23.03407 -22.75146 -22.31387 -20.92689 -19.07291 -18.53895 -18.50214 -18.25243 -17.25634 -16.81259 -16.69381 -16.38157 -15.92635 -15.74674 -15.57239 -15.42902 -15.04891 -14.72630 -14.70748 -14.51410 -14.32992 -14.12775 -13.88626 -13.59442 -13.47292 -13.28578 -13.23357 -12.62966 -12.45982 -12.28256 -12.21132 -12.07826 -12.00252 -11.95965 -11.71529 -11.54693 -11.21943 -11.04416 -10.81539 -10.72854 -10.37028 -9.65799 -8.79527 -5.05541 -0.57245 -0.09973 0.90348 1.25781 1.60761 1.85289 1.92002 2.46991 3.05065 3.18204 3.42439 3.55921 3.63202 3.67708 3.72761 3.75353 3.89009 3.97877 4.03068 4.09862 4.14182 4.19628 4.25907 4.26968 4.31381 4.35213 4.37033 4.41803 4.45439 4.47387 4.52446 4.67601 4.75983 4.90496 4.92778 4.97691 5.03072 5.04757 5.08469 5.11238 5.11973 5.15019 5.27880 5.34505 5.37277 5.54647 5.56672 5.66172 5.96010 6.46354 6.75034 6.81995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.072 4.072 3 Si 0.782 3.218 4 C -0.148 4.148 5 C 0.115 3.885 6 O -0.333 6.333 7 C 0.072 3.928 8 C -0.081 4.081 9 H 0.068 0.932 10 C -0.104 4.104 11 C -0.146 4.146 12 C 0.103 3.897 13 H 0.065 0.935 14 O -0.590 6.590 15 C -0.112 4.112 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.057 4.057 23 C -0.100 4.100 24 C -0.108 4.108 25 H 0.392 0.608 26 H 0.091 0.909 27 H -0.298 1.298 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.165 0.835 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 0.534 -5.737 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.181 4.181 3 Si 0.686 3.314 4 C -0.149 4.149 5 C 0.071 3.929 6 O -0.250 6.250 7 C -0.002 4.002 8 C -0.100 4.100 9 H 0.086 0.914 10 C -0.141 4.141 11 C -0.184 4.184 12 C 0.045 3.955 13 H 0.083 0.917 14 O -0.398 6.398 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.057 4.057 23 C -0.118 4.118 24 C -0.125 4.125 25 H 0.241 0.759 26 H 0.108 0.892 27 H -0.226 1.226 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.183 0.817 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.283 1.244 -4.367 5.603 hybrid contribution -0.176 -1.222 0.159 1.245 sum 3.107 0.022 -4.207 5.230 Atomic orbital electron populations 1.86518 1.17122 1.82217 1.49970 1.25227 0.85523 1.10976 0.96414 0.93778 0.77951 0.74610 0.85015 1.20513 1.02218 0.93694 0.98465 1.18353 0.96713 0.89781 0.88055 1.86009 1.34986 1.72071 1.31961 1.22861 0.91808 0.97750 0.87780 1.21143 0.98404 0.96467 0.93976 0.91366 1.21429 1.00103 0.95030 0.97547 1.22220 0.98771 1.01142 0.96286 1.21880 0.93291 0.92859 0.87510 0.91699 1.86480 1.74182 1.39384 1.39776 1.21459 1.00047 0.95164 0.98335 1.21445 0.97670 1.00773 0.94264 1.18597 1.00652 0.94726 0.95024 1.21066 0.99945 0.93139 0.99207 1.21202 0.97790 1.01378 0.93334 1.21271 0.98466 0.94480 0.99355 1.21401 0.99052 0.95211 0.97170 1.18343 0.98863 0.94369 0.94151 1.21409 0.98733 0.92739 0.98875 1.20793 0.98584 1.00375 0.92715 0.75868 0.89185 1.22590 1.20685 0.92229 0.93183 0.91842 0.90888 0.90426 0.92424 0.75675 0.91010 0.92275 0.90257 0.90582 0.85575 0.84148 0.83513 0.82695 0.81750 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.47 12.88 -148.98 -1.92 -4.39 16 2 C -0.07 -0.21 2.32 71.23 0.17 -0.05 16 3 Si 0.78 -0.85 29.86 68.60 2.05 1.20 16 4 C -0.15 -0.49 5.24 -20.00 -0.10 -0.59 16 5 C 0.11 0.76 5.67 22.57 0.13 0.89 16 6 O -0.33 -2.47 8.14 -91.38 -0.74 -3.21 16 7 C 0.07 0.23 5.17 71.98 0.37 0.60 16 8 C -0.08 -0.15 2.43 -10.79 -0.03 -0.18 16 9 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 10 C -0.10 -0.08 5.10 30.59 0.16 0.07 16 11 C -0.15 -0.10 5.55 30.60 0.17 0.07 16 12 C 0.10 0.13 3.47 30.60 0.11 0.24 16 13 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 14 O -0.59 -2.19 13.32 -148.98 -1.98 -4.17 16 15 C -0.11 -0.23 5.58 30.61 0.17 -0.06 16 16 C -0.10 0.05 5.21 30.61 0.16 0.21 16 17 C -0.09 -0.52 5.75 -21.22 -0.12 -0.64 16 18 C -0.12 -0.48 9.56 22.31 0.21 -0.27 16 19 C -0.12 -0.10 9.95 22.05 0.22 0.11 16 20 C -0.12 0.11 9.95 22.04 0.22 0.33 16 21 C -0.11 0.09 9.77 22.33 0.22 0.30 16 22 C -0.06 -0.14 5.74 -21.30 -0.12 -0.26 16 23 C -0.10 0.16 9.77 22.35 0.22 0.38 16 24 C -0.11 0.15 8.56 22.02 0.19 0.34 16 25 H 0.39 -1.54 8.70 -74.05 -0.64 -2.19 16 26 H 0.09 0.51 6.40 -2.39 -0.02 0.49 16 27 H -0.30 -1.90 7.11 99.48 0.71 -1.20 16 28 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 29 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.05 0.15 7.01 -2.39 -0.02 0.13 16 31 H 0.06 0.22 7.82 -2.39 -0.02 0.20 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.39 -1.71 9.08 -74.05 -0.67 -2.38 16 36 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.13 0.44 7.62 -2.91 -0.02 0.42 16 41 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 42 H 0.15 -0.84 8.06 -2.91 -0.02 -0.87 16 43 H 0.16 -0.99 8.06 -2.91 -0.02 -1.01 16 44 H 0.16 -1.33 8.06 -2.91 -0.02 -1.36 16 45 H 0.16 -1.23 5.04 -2.91 -0.01 -1.24 16 Total: 0.00 -17.76 358.49 -0.55 -18.31 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: -0.28 Total: -9.23 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 2.33 Total: 1.49 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -4.65 Total: -11.78 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.05 Total: 1.20 kcal Total: -17.76 -0.55 -18.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_16737254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.592 kcal (2) G-P(sol) polarization free energy of solvation -17.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds