Wall clock time and date at job start Mon Mar 8 2021 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00221 * 2 1 4 4 C 1.53000 * 112.84631 * 294.12971 * 3 2 1 5 5 F 1.39897 * 109.46764 * 195.74898 * 4 3 2 6 6 F 1.39901 * 109.47295 * 315.74328 * 4 3 2 7 7 F 1.39898 * 109.47358 * 75.74901 * 4 3 2 8 8 C 1.53774 * 113.61555 * 162.82305 * 3 2 1 9 9 C 1.53781 * 87.08015 * 270.88387 * 8 3 2 10 10 H 1.09005 * 113.68956 * 220.00854 * 9 8 3 11 11 C 1.53002 * 113.61468 * 89.11880 * 9 8 3 12 12 O 1.42894 * 109.47147 * 87.50326 * 11 9 8 13 13 C 1.35808 * 116.99878 * 179.97438 * 12 11 9 14 14 C 1.40963 * 120.22766 * 269.72733 * 13 12 11 15 15 C 1.40411 * 121.29925 * 0.55164 * 14 13 12 16 16 C 1.36132 * 119.66416 * 179.73227 * 15 14 13 17 17 C 1.39354 * 120.98265 * 359.68592 * 16 15 14 18 18 C 1.36104 * 120.97574 * 0.04266 * 17 16 15 19 19 C 1.40556 * 119.64619 * 359.97438 * 18 17 16 20 20 C 1.40517 * 121.26001 * 179.97438 * 19 18 17 21 21 C 1.36180 * 119.76710 * 179.97438 * 20 19 18 22 22 C 1.36676 * 120.22913 * 89.99794 * 13 12 11 23 23 C 1.50696 * 119.53573 * 0.02562 * 22 13 12 24 24 O 1.42905 * 109.47054 * 75.00187 * 23 22 13 25 25 Si 1.86297 * 109.47201 * 194.99916 * 23 22 13 26 26 C 1.53775 * 113.61148 * 65.32144 * 3 2 1 27 27 H 1.09004 * 109.46804 * 63.09419 * 1 2 3 28 28 H 1.08999 * 109.47336 * 183.09054 * 1 2 3 29 29 H 1.08998 * 109.47279 * 303.09647 * 1 2 3 30 30 H 1.08995 * 113.61483 * 156.33427 * 8 3 2 31 31 H 1.08999 * 113.61416 * 25.43016 * 8 3 2 32 32 H 1.08998 * 109.47088 * 327.49852 * 11 9 8 33 33 H 1.09005 * 109.46595 * 207.50411 * 11 9 8 34 34 H 1.08002 * 120.16179 * 359.45757 * 15 14 13 35 35 H 1.08002 * 119.50922 * 179.70321 * 16 15 14 36 36 H 1.08005 * 119.51324 * 180.02562 * 17 16 15 37 37 H 1.08001 * 120.17815 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.12108 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.47386 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47287 * 315.00137 * 23 22 13 41 41 H 0.96695 * 113.99805 * 180.02562 * 24 23 22 42 42 H 1.48505 * 109.99780 * 300.00121 * 25 23 22 43 43 H 1.48499 * 109.99870 * 61.31757 * 25 23 22 44 44 H 1.08998 * 113.61951 * 334.57027 * 26 3 2 45 45 H 1.09001 * 113.68744 * 203.67626 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7254 2.0826 -1.2868 5 9 2.5970 3.1733 -1.3754 6 9 1.9148 1.2435 -2.3900 7 9 0.4039 2.5417 -1.2715 8 6 3.4906 1.3207 0.4161 9 6 3.0003 1.4808 1.8648 10 1 3.5974 2.1763 2.4549 11 6 2.7580 0.1504 2.5805 12 8 3.9738 -0.2929 3.1864 13 6 3.9310 -1.4672 3.8672 14 6 3.6256 -1.4789 5.2433 15 6 3.3488 -0.2913 5.9393 16 6 3.0525 -0.3418 7.2670 17 6 3.0130 -1.5573 7.9474 18 6 3.2704 -2.7288 7.3042 19 6 3.5804 -2.7158 5.9333 20 6 3.8523 -3.9050 5.2359 21 6 4.1487 -3.8571 3.9076 22 6 4.1891 -2.6452 3.2241 23 6 4.5220 -2.6319 1.7545 24 8 5.8589 -2.1605 1.5732 25 14 4.3737 -4.3575 1.0684 26 6 1.7234 2.1074 1.2803 27 1 -0.3633 0.4651 -0.9165 28 1 -0.3634 -1.0261 0.0554 29 1 -0.3634 0.5611 0.8609 30 1 4.0401 2.1848 0.0430 31 1 4.0058 0.3781 0.2312 32 1 2.4190 -0.5935 1.8596 33 1 1.9968 0.2848 3.3492 34 1 3.3751 0.6579 5.4247 35 1 2.8447 0.5737 7.8009 36 1 2.7749 -1.5699 9.0008 37 1 3.2366 -3.6635 7.8443 38 1 3.8263 -4.8537 5.7514 39 1 4.3566 -4.7740 3.3762 40 1 3.8300 -1.9720 1.2311 41 1 6.1415 -2.1252 0.6492 42 1 5.3122 -5.2669 1.7737 43 1 2.9801 -4.8471 1.2221 44 1 0.8120 1.8001 1.7931 45 1 1.7893 3.1870 1.1449 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_17321600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:52:39 Heat of formation + Delta-G solvation = -169.331863 kcal Electronic energy + Delta-G solvation = -35430.180660 eV Core-core repulsion = 30352.574960 eV Total energy + Delta-G solvation = -5077.605700 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.127 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.23346 -48.77123 -48.69817 -42.06556 -41.32996 -39.33540 -38.15740 -37.06902 -36.77482 -33.17611 -32.07946 -30.83706 -29.87164 -28.20879 -27.40566 -26.78722 -26.43409 -24.52756 -23.38592 -22.93947 -22.74848 -20.63839 -19.83727 -19.53222 -19.27482 -19.11619 -18.55631 -18.37339 -17.71056 -17.22720 -17.01618 -16.58634 -16.35337 -16.10455 -15.68928 -15.63766 -15.58713 -15.54407 -15.37737 -15.18367 -15.11490 -14.95176 -14.87508 -14.74374 -14.52290 -14.31712 -14.11806 -14.04123 -13.94867 -13.33358 -13.27260 -13.14270 -12.89279 -12.69437 -12.37332 -12.25877 -12.19189 -12.08644 -11.94206 -11.77026 -11.61314 -11.13332 -10.87112 -10.71847 -10.22555 -9.76092 -8.88667 -4.99192 -0.66193 -0.21425 0.82630 1.25535 1.54967 1.58227 1.72971 1.90233 2.09141 2.33642 2.58782 2.64675 2.91489 2.94336 3.33217 3.37689 3.39873 3.50745 3.52479 3.74146 3.78524 3.84669 3.95403 4.06009 4.16618 4.19037 4.23158 4.24185 4.29675 4.32288 4.37100 4.43503 4.49301 4.53993 4.60022 4.65834 4.71682 4.79169 4.81396 4.88191 4.96271 4.99071 5.03309 5.08572 5.22970 5.47420 5.48352 5.52444 5.71434 5.89080 6.40489 6.89668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.343 6.343 3 C 0.038 3.962 4 C 0.434 3.566 5 F -0.176 7.176 6 F -0.186 7.186 7 F -0.186 7.186 8 C -0.110 4.110 9 C -0.092 4.092 10 H 0.111 0.889 11 C 0.075 3.925 12 O -0.328 6.328 13 C 0.130 3.870 14 C -0.089 4.089 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.057 4.057 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.071 4.071 24 O -0.556 6.556 25 Si 0.766 3.234 26 C -0.136 4.136 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.398 0.602 42 H -0.285 1.285 43 H -0.285 1.285 44 H 0.102 0.898 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 0.527 1.110 2.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.261 6.261 3 C -0.005 4.005 4 C 0.379 3.621 5 F -0.158 7.158 6 F -0.167 7.167 7 F -0.167 7.167 8 C -0.147 4.147 9 C -0.110 4.110 10 H 0.129 0.871 11 C 0.002 3.998 12 O -0.245 6.245 13 C 0.086 3.914 14 C -0.090 4.090 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.058 4.058 20 C -0.122 4.122 21 C -0.148 4.148 22 C -0.117 4.117 23 C -0.180 4.180 24 O -0.365 6.365 25 Si 0.672 3.328 26 C -0.173 4.173 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.173 0.827 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.249 0.751 42 H -0.213 1.213 43 H -0.212 1.212 44 H 0.120 0.880 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.576 -0.284 1.840 3.178 hybrid contribution -0.585 0.478 -0.104 0.763 sum -3.161 0.194 1.736 3.611 Atomic orbital electron populations 1.23264 0.78919 1.05168 1.01742 1.88063 1.21861 1.22376 1.93836 1.24153 1.00597 0.86218 0.89498 1.21481 0.74077 0.78720 0.87802 1.93173 1.69518 1.56451 1.96635 1.93191 1.94828 1.71306 1.57374 1.93179 1.36852 1.89828 1.96859 1.23300 0.90397 1.05946 0.95037 1.22001 0.97775 0.95884 0.95374 0.87084 1.22778 0.84911 0.95879 0.96260 1.85966 1.34047 1.35302 1.69161 1.18182 0.98586 0.85323 0.89302 1.18625 1.01975 0.94786 0.93571 1.21105 0.99218 0.97119 0.95376 1.21270 0.98376 0.99437 0.94167 1.21310 0.98064 0.92043 1.01564 1.21360 0.99193 1.00324 0.92323 1.18276 1.00150 0.92260 0.95075 1.21291 0.98515 0.98601 0.93812 1.20720 1.01666 0.96690 0.95742 1.19673 1.03158 0.92849 0.96003 1.24734 0.87497 1.11756 0.94062 1.86492 1.27467 1.89146 1.33426 0.94428 0.77685 0.72716 0.88015 1.23633 0.99659 1.01519 0.92494 0.93412 0.87085 0.91523 0.85765 0.88658 0.91133 0.92148 0.84635 0.83379 0.83114 0.83080 0.82685 0.85694 0.90382 0.75128 1.21256 1.21232 0.87995 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.16 16 2 O -0.34 0.10 8.36 -148.98 -1.25 -1.14 16 3 C 0.04 -0.07 0.84 -10.27 -0.01 -0.07 16 4 C 0.43 0.67 2.52 71.98 0.18 0.85 16 5 F -0.18 -0.30 15.82 44.97 0.71 0.41 16 6 F -0.19 -0.93 17.11 44.97 0.77 -0.16 16 7 F -0.19 -0.43 15.34 44.97 0.69 0.26 16 8 C -0.11 0.32 6.89 31.12 0.21 0.53 16 9 C -0.09 0.31 4.20 -10.27 -0.04 0.27 16 10 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 11 C 0.08 0.04 5.38 71.98 0.39 0.42 16 12 O -0.33 -2.05 8.60 -91.39 -0.79 -2.83 16 13 C 0.13 1.13 5.67 22.57 0.13 1.26 16 14 C -0.09 -0.70 5.75 -21.23 -0.12 -0.83 16 15 C -0.11 -0.47 9.56 22.31 0.21 -0.25 16 16 C -0.11 -0.09 9.95 22.05 0.22 0.13 16 17 C -0.11 0.00 9.95 22.04 0.22 0.22 16 18 C -0.11 -0.21 9.77 22.34 0.22 0.01 16 19 C -0.06 -0.37 5.74 -21.30 -0.12 -0.49 16 20 C -0.10 -0.57 9.77 22.35 0.22 -0.35 16 21 C -0.13 -1.01 8.56 22.02 0.19 -0.82 16 22 C -0.12 -0.99 5.27 -20.00 -0.11 -1.09 16 23 C -0.07 -0.26 2.32 71.23 0.16 -0.09 16 24 O -0.56 -2.20 12.86 -148.98 -1.92 -4.11 16 25 Si 0.77 0.53 30.16 68.60 2.07 2.60 16 26 C -0.14 0.73 6.52 31.12 0.20 0.93 16 27 H 0.05 -0.09 6.56 -2.38 -0.02 -0.11 16 28 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.07 -0.40 6.60 -2.39 -0.02 -0.42 16 30 H 0.12 -0.58 7.03 -2.39 -0.02 -0.60 16 31 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 32 H 0.07 0.10 5.02 -2.39 -0.01 0.09 16 33 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.14 0.28 7.62 -2.91 -0.02 0.26 16 35 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 36 H 0.15 -0.81 8.06 -2.91 -0.02 -0.83 16 37 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 38 H 0.16 -0.05 8.06 -2.91 -0.02 -0.07 16 39 H 0.13 0.80 4.79 -2.91 -0.01 0.78 16 40 H 0.08 0.13 6.42 -2.39 -0.02 0.12 16 41 H 0.40 -2.58 8.74 -74.06 -0.65 -3.23 16 42 H -0.28 -1.84 6.72 99.48 0.67 -1.17 16 43 H -0.29 -1.61 7.11 99.48 0.71 -0.91 16 44 H 0.10 -0.71 6.64 -2.39 -0.02 -0.72 16 45 H 0.12 -0.92 8.04 -2.39 -0.02 -0.94 16 Total: 0.00 -17.52 373.26 4.03 -13.49 By element: Atomic # 1 Polarization: -10.72 SS G_CDS: 0.41 Total: -10.31 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 3.32 Total: 1.79 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -3.95 Total: -8.09 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 2.17 Total: 0.51 kcal Atomic # 14 Polarization: 0.53 SS G_CDS: 2.07 Total: 2.60 kcal Total: -17.52 4.03 -13.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_17321600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.842 kcal (2) G-P(sol) polarization free energy of solvation -17.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds