Wall clock time and date at job start Mon Mar 8 2021 15:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35810 * 116.99879 * 180.02562 * 12 11 10 14 14 C 1.36623 * 120.22867 * 269.72830 * 13 12 11 15 15 C 1.50703 * 119.53918 * 0.02562 * 14 13 12 16 16 O 1.42897 * 109.47225 * 285.00738 * 15 14 13 17 17 Si 1.86302 * 109.47380 * 165.00290 * 15 14 13 18 18 H 1.48504 * 109.46902 * 60.00382 * 17 15 14 19 19 H 1.48498 * 109.47303 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47244 * 300.00294 * 17 15 14 21 21 C 1.39244 * 120.92852 * 179.72954 * 14 13 12 22 22 C 1.36140 * 121.06016 * 0.57144 * 21 14 13 23 23 C 1.40572 * 119.76832 * 359.70948 * 22 21 14 24 24 C 1.40507 * 121.27204 * 180.02562 * 23 22 21 25 25 C 1.36136 * 119.64777 * 179.97438 * 24 23 22 26 26 C 1.39314 * 120.97921 * 0.02562 * 25 24 23 27 27 C 1.36170 * 120.96771 * 359.90448 * 26 25 24 28 28 C 1.40373 * 119.66555 * 0.14142 * 27 26 25 29 29 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 30 30 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 31 31 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 34 34 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 35 35 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 36 36 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 37 37 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 38 38 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 39 39 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 40 40 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 41 41 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 42 42 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 43 43 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 44 44 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 45 45 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 46 46 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 47 47 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 48 48 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 49 49 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 50 50 H 1.08998 * 109.47099 * 45.00338 * 15 14 13 51 51 H 0.96706 * 113.99926 * 300.00036 * 16 15 14 52 52 H 1.07997 * 119.47543 * 180.28106 * 21 14 13 53 53 H 1.07994 * 120.11485 * 179.68955 * 22 21 14 54 54 H 1.08002 * 120.17485 * 359.97438 * 24 23 22 55 55 H 1.08006 * 119.50921 * 179.97438 * 25 24 23 56 56 H 1.07994 * 119.51450 * 179.97438 * 26 25 24 57 57 H 1.07996 * 120.16788 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6976 -7.6061 4.6619 14 6 2.8149 -8.3877 4.5763 15 6 3.7018 -8.2855 3.3622 16 8 3.0750 -8.9406 2.2578 17 14 5.3393 -9.0992 3.7191 18 1 5.1190 -10.5296 4.0521 19 1 6.2135 -8.9980 2.5230 20 1 5.9907 -8.4184 4.8667 21 6 3.1489 -9.2729 5.5978 22 6 2.3671 -9.3944 6.7057 23 6 1.2058 -8.6121 6.8295 24 6 0.3764 -8.7115 7.9594 25 6 -0.7403 -7.9376 8.0452 26 6 -1.0752 -7.0466 7.0279 27 6 -0.2941 -6.9230 5.9194 28 6 0.8647 -7.7054 5.7954 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2494 38 1 1.8938 -0.5134 3.9323 39 1 1.8934 1.0279 3.0423 40 1 0.4400 0.0002 3.0423 41 1 4.3777 -1.3911 0.6315 42 1 4.3770 0.1503 1.5217 43 1 4.3774 -1.3909 2.4118 44 1 1.6655 -2.7116 3.5652 45 1 3.1185 -3.2254 2.6746 46 1 1.8274 -5.0693 1.6337 47 1 0.3749 -4.5551 2.5246 48 1 3.0051 -5.4633 3.7796 49 1 1.5528 -4.9492 4.6711 50 1 3.8635 -7.2357 3.1177 51 1 2.9004 -9.8803 2.4054 52 1 4.0401 -9.8764 5.5078 53 1 2.6380 -10.0895 7.4865 54 1 0.6236 -9.3982 8.7555 55 1 -1.3764 -8.0161 8.9145 56 1 -1.9669 -6.4444 7.1204 57 1 -0.5658 -6.2279 5.1388 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_18527724.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:10:37 Heat of formation + Delta-G solvation = -123.944578 kcal Electronic energy + Delta-G solvation = -32737.940557 eV Core-core repulsion = 28607.609105 eV Total energy + Delta-G solvation = -4130.331452 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.203 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.89304 -39.52740 -38.46803 -37.97484 -36.82893 -36.68609 -33.80942 -32.59524 -31.91422 -30.01513 -29.37712 -29.06325 -27.83969 -27.38111 -27.13180 -26.07604 -24.42734 -23.02952 -22.70796 -22.60062 -20.41751 -19.19358 -18.59663 -18.53810 -17.81762 -17.23529 -16.92010 -16.62648 -16.19022 -15.95651 -15.89942 -15.68359 -15.55951 -15.20608 -15.15586 -14.85619 -14.73438 -14.68789 -14.53110 -14.24219 -13.96989 -13.94463 -13.65506 -13.54472 -13.38132 -13.19744 -12.96163 -12.94980 -12.90673 -12.87735 -12.56292 -12.45969 -12.38677 -12.27863 -12.06058 -12.02654 -11.92978 -11.73099 -11.70216 -11.56889 -11.40971 -11.30039 -11.00806 -10.78090 -10.31774 -10.31056 -10.05562 -9.66340 -8.79829 -0.57391 -0.10941 0.89905 1.13936 1.42136 1.46987 1.51837 1.78692 1.85390 1.89393 2.12660 2.38371 2.64965 3.05444 3.44416 3.65859 3.72498 3.86716 3.89058 3.99573 4.04983 4.11587 4.12676 4.12854 4.15161 4.28649 4.31240 4.34314 4.37143 4.41995 4.46001 4.46988 4.53175 4.70585 4.74071 4.75412 4.78062 4.79153 4.82707 4.82779 4.90615 5.00110 5.02675 5.05555 5.09291 5.09475 5.09868 5.13364 5.14431 5.21947 5.33494 5.34764 5.40827 5.44887 5.54700 5.55137 5.56682 5.60464 5.64209 5.64935 5.95995 6.49026 6.70885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.383 4.383 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.313 2.687 6 C -0.516 4.516 7 C -0.517 4.517 8 O -0.641 6.641 9 C 0.082 3.918 10 C -0.117 4.117 11 C 0.062 3.938 12 O -0.336 6.336 13 C 0.123 3.877 14 C -0.147 4.147 15 C -0.080 4.080 16 O -0.548 6.548 17 Si 0.983 3.017 18 H -0.240 1.240 19 H -0.274 1.274 20 H -0.251 1.251 21 C -0.124 4.124 22 C -0.100 4.100 23 C -0.057 4.057 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.089 4.089 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.386 0.614 52 H 0.144 0.856 53 H 0.159 0.841 54 H 0.153 0.847 55 H 0.147 0.853 56 H 0.142 0.858 57 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -0.081 5.113 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.425 4.425 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.443 2.557 6 C -0.618 4.618 7 C -0.619 4.619 8 O -0.600 6.600 9 C 0.006 3.994 10 C -0.155 4.155 11 C -0.012 4.012 12 O -0.253 6.253 13 C 0.079 3.921 14 C -0.147 4.147 15 C -0.190 4.190 16 O -0.354 6.354 17 Si 0.806 3.194 18 H -0.164 1.164 19 H -0.199 1.199 20 H -0.174 1.174 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.057 4.057 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.132 4.132 28 C -0.090 4.090 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.127 0.873 51 H 0.234 0.766 52 H 0.162 0.838 53 H 0.177 0.823 54 H 0.171 0.829 55 H 0.165 0.835 56 H 0.160 0.840 57 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.187 -0.085 4.708 5.192 hybrid contribution -0.430 0.334 0.003 0.545 sum 1.757 0.249 4.711 5.034 Atomic orbital electron populations 1.21541 0.94328 1.01682 1.01865 1.25925 1.00360 1.03102 1.13163 1.21600 1.01299 0.94598 1.02232 1.21543 1.01037 0.99947 0.96913 0.76245 0.62639 0.52619 0.64151 1.27077 1.06854 1.09876 1.18021 1.27086 1.25145 1.05078 1.04601 1.85322 1.79711 1.46757 1.48219 1.21984 0.99059 0.91014 0.87318 1.21453 1.02645 0.93628 0.97764 1.22770 0.98674 0.80608 0.99100 1.85995 1.74228 1.22013 1.43077 1.18248 0.93183 0.93094 0.87568 1.20453 0.96610 0.99738 0.97949 1.25090 1.04276 1.03570 0.86014 1.86537 1.82841 1.28071 1.37986 0.85241 0.74203 0.80450 0.79535 1.16363 1.19911 1.17448 1.20892 1.01020 0.98576 0.93624 1.21340 0.93103 0.98686 0.98663 1.18311 0.96451 0.96379 0.94551 1.21380 0.94554 0.99993 0.97022 1.21272 0.97297 0.95388 0.99471 1.21217 1.00121 0.98780 0.93530 1.21086 0.94053 0.99262 0.98833 1.18607 0.97086 0.99030 0.94249 0.92016 0.93332 0.92709 0.91766 0.93163 0.91732 0.92723 0.93332 0.92053 0.90917 0.90289 0.91187 0.91223 0.90287 0.90881 0.90929 0.90943 0.90796 0.90616 0.91537 0.91692 0.87344 0.76566 0.83846 0.82316 0.82890 0.83484 0.84029 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.19 7.85 71.98 0.56 0.38 16 2 C -0.38 -0.09 0.53 -10.79 -0.01 -0.10 16 3 C -0.14 0.13 7.85 71.98 0.56 0.69 16 4 C -0.14 -0.22 7.85 71.98 0.56 0.35 16 5 Si 1.31 -2.54 8.45 68.60 0.58 -1.96 16 6 C -0.52 1.04 8.50 113.37 0.96 2.01 16 7 C -0.52 0.96 8.50 113.37 0.96 1.92 16 8 O -0.64 -0.90 8.56 -148.98 -1.28 -2.18 16 9 C 0.08 -0.12 5.12 71.98 0.37 0.25 16 10 C -0.12 -0.14 5.95 30.59 0.18 0.04 16 11 C 0.06 0.07 5.80 71.98 0.42 0.49 16 12 O -0.34 -2.30 8.60 -91.42 -0.79 -3.09 16 13 C 0.12 0.78 5.67 22.57 0.13 0.91 16 14 C -0.15 -0.51 5.24 -20.00 -0.10 -0.62 16 15 C -0.08 -0.15 2.32 71.24 0.17 0.01 16 16 O -0.55 -2.31 12.88 -148.98 -1.92 -4.23 16 17 Si 0.98 -0.96 25.44 68.60 1.75 0.78 16 18 H -0.24 0.64 6.72 99.48 0.67 1.31 16 19 H -0.27 -0.70 7.11 99.48 0.71 0.00 16 20 H -0.25 0.17 7.11 99.48 0.71 0.88 16 21 C -0.12 -0.07 8.56 22.02 0.19 0.12 16 22 C -0.10 0.00 9.77 22.35 0.22 0.22 16 23 C -0.06 -0.18 5.74 -21.30 -0.12 -0.31 16 24 C -0.11 0.02 9.77 22.33 0.22 0.23 16 25 C -0.12 0.07 9.95 22.04 0.22 0.29 16 26 C -0.12 -0.13 9.95 22.05 0.22 0.09 16 27 C -0.11 -0.49 9.56 22.31 0.21 -0.28 16 28 C -0.09 -0.53 5.75 -21.23 -0.12 -0.66 16 29 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 30 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.05 0.13 7.96 -2.38 -0.02 0.11 16 32 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 33 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 34 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 35 H 0.05 0.14 7.96 -2.39 -0.02 0.13 16 36 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 37 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 38 H 0.07 -0.23 7.48 -2.39 -0.02 -0.25 16 39 H 0.08 -0.22 7.79 -2.38 -0.02 -0.24 16 40 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 41 H 0.07 -0.06 7.79 -2.39 -0.02 -0.08 16 42 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 43 H 0.07 -0.22 7.48 -2.38 -0.02 -0.24 16 44 H 0.07 -0.35 7.21 -2.39 -0.02 -0.37 16 45 H 0.07 -0.34 7.21 -2.39 -0.02 -0.36 16 46 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.07 -0.09 7.06 -2.39 -0.02 -0.10 16 49 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.11 0.16 6.44 -2.39 -0.02 0.15 16 51 H 0.39 -0.96 8.70 -74.05 -0.64 -1.60 16 52 H 0.14 -0.50 4.78 -2.91 -0.01 -0.51 16 53 H 0.16 -0.93 8.06 -2.91 -0.02 -0.95 16 54 H 0.15 -0.84 8.06 -2.91 -0.02 -0.86 16 55 H 0.15 -0.80 8.06 -2.91 -0.02 -0.82 16 56 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 57 H 0.13 0.45 7.62 -2.91 -0.02 0.42 16 Total: 0.00 -13.77 448.42 5.05 -8.72 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: 0.90 Total: -4.08 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.81 Total: 6.04 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -3.98 Total: -9.50 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.33 Total: -1.18 kcal Total: -13.77 5.05 -8.72 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_18527724.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.225 kcal (2) G-P(sol) polarization free energy of solvation -13.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds