Wall clock time and date at job start Mon Mar 8 2021 11:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86305 * 109.47088 * 2 1 4 4 C 1.86303 * 109.46993 * 240.00308 * 2 1 3 5 5 C 1.86295 * 109.47145 * 119.99897 * 2 1 3 6 6 O 1.42901 * 109.47125 * 64.67416 * 5 2 1 7 7 C 1.35802 * 116.99851 * 183.58765 * 6 5 2 8 8 C 1.36633 * 120.22697 * 93.91392 * 7 6 5 9 9 C 1.50698 * 119.53659 * 359.96961 * 8 7 6 10 10 O 1.42905 * 109.46994 * 75.00685 * 9 8 7 11 11 Si 1.86295 * 109.47386 * 195.00636 * 9 8 7 12 12 H 1.48500 * 109.47324 * 60.00277 * 11 9 8 13 13 H 1.48503 * 109.47322 * 300.00110 * 11 9 8 14 14 H 1.48505 * 109.47207 * 180.02562 * 11 9 8 15 15 C 1.39244 * 120.93189 * 180.25545 * 8 7 6 16 16 C 1.36140 * 121.05805 * 359.40763 * 15 8 7 17 17 C 1.40570 * 119.76621 * 0.59939 * 16 15 8 18 18 C 1.40504 * 121.26641 * 179.70622 * 17 16 15 19 19 C 1.36143 * 119.64991 * 179.97438 * 18 17 16 20 20 C 1.39316 * 120.97276 * 0.02636 * 19 18 17 21 21 C 1.36173 * 120.97279 * 359.92754 * 20 19 18 22 22 C 1.40365 * 119.66441 * 0.09005 * 21 20 19 23 23 H 1.09000 * 109.47149 * 295.01899 * 1 2 3 24 24 H 1.09003 * 109.47597 * 55.01908 * 1 2 3 25 25 H 1.09000 * 109.47282 * 175.02071 * 1 2 3 26 26 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47029 * 300.00458 * 3 2 1 28 28 H 1.08999 * 109.46806 * 59.99916 * 3 2 1 29 29 H 1.08996 * 109.46993 * 304.98187 * 4 2 1 30 30 H 1.08994 * 109.47374 * 64.98880 * 4 2 1 31 31 H 1.09000 * 109.46837 * 184.98777 * 4 2 1 32 32 H 1.09000 * 109.47542 * 304.66959 * 5 2 1 33 33 H 1.09004 * 109.47151 * 184.66949 * 5 2 1 34 34 H 1.08997 * 109.47360 * 315.00635 * 9 8 7 35 35 H 0.96701 * 113.99935 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.47010 * 179.72081 * 15 8 7 37 37 H 1.07990 * 120.11820 * 180.26430 * 16 15 8 38 38 H 1.07995 * 120.17929 * 0.02562 * 18 17 16 39 39 H 1.08005 * 119.51130 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.51044 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.16389 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0994 -2.2534 1.4675 7 6 2.4108 -3.0230 2.5422 8 6 1.5000 -3.2064 3.5440 9 6 0.1477 -2.5482 3.4483 10 8 -0.6561 -3.2476 2.4961 11 14 -0.6839 -2.5924 5.1147 12 1 0.1514 -1.8656 6.1043 13 1 -0.8496 -4.0031 5.5480 14 1 -2.0167 -1.9443 5.0202 15 6 1.8057 -3.9881 4.6551 16 6 3.0153 -4.6020 4.7706 17 6 3.9803 -4.4381 3.7616 18 6 5.2409 -5.0520 3.8515 19 6 6.1506 -4.8715 2.8548 20 6 5.8510 -4.0851 1.7445 21 6 4.6392 -3.4758 1.6236 22 6 3.6761 -3.6388 2.6317 23 1 -0.3633 0.4346 0.9312 24 1 -0.3634 0.5892 -0.8420 25 1 -0.3634 -1.0238 -0.0892 26 1 3.5740 1.7565 -0.0005 27 1 2.1205 2.2704 -0.8900 28 1 2.1206 2.2703 0.8900 29 1 2.0496 -1.8768 -1.5670 30 1 2.1954 -0.3153 -2.4089 31 1 3.5703 -0.9562 -1.4776 32 1 2.0540 -0.4150 2.4092 33 1 3.5708 -0.8063 1.5639 34 1 0.2693 -1.5127 3.1304 35 1 -1.5423 -2.8777 2.3823 36 1 1.0696 -4.1135 5.4353 37 1 3.2348 -5.2083 5.6368 38 1 5.4867 -5.6647 4.7062 39 1 7.1187 -5.3448 2.9260 40 1 6.5905 -3.9575 0.9678 41 1 4.4207 -2.8694 0.7571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:54 Heat of formation + Delta-G solvation = -67.053544 kcal Electronic energy + Delta-G solvation = -21497.188764 eV Core-core repulsion = 18465.694579 eV Total energy + Delta-G solvation = -3031.494185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71486 -39.16921 -37.96160 -36.69495 -32.95576 -31.90589 -30.20224 -29.64046 -28.47105 -28.38324 -27.68376 -26.25735 -24.30299 -22.80958 -22.54807 -19.02823 -18.45924 -18.36530 -17.55031 -16.76750 -16.17526 -16.00047 -15.85702 -15.25856 -15.04845 -14.50792 -14.44919 -14.28472 -14.22478 -14.01667 -13.88247 -13.82247 -13.62990 -13.33876 -13.25339 -13.18482 -13.06344 -12.79763 -12.29032 -12.06226 -12.03599 -11.90086 -11.68122 -11.02250 -10.97368 -10.80131 -10.71314 -10.62967 -10.19210 -9.53661 -8.68094 -0.45140 0.01441 1.01003 1.14721 1.42285 1.47216 1.49513 1.76576 1.82323 1.88996 1.97374 2.52493 2.98450 3.21428 3.51574 3.71586 3.88720 3.94361 4.06208 4.17570 4.24703 4.35862 4.42114 4.43535 4.51928 4.59657 4.63038 4.65009 4.71870 4.77005 4.80021 4.83381 4.86184 5.00999 5.09305 5.19244 5.22314 5.39192 5.45241 5.56431 5.60065 5.62373 5.66116 5.72422 6.01785 6.58191 6.69906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.046 2.954 3 C -0.452 4.452 4 C -0.447 4.447 5 C -0.239 4.239 6 O -0.297 6.297 7 C 0.135 3.865 8 C -0.099 4.099 9 C -0.071 4.071 10 O -0.535 6.535 11 Si 0.937 3.063 12 H -0.248 1.248 13 H -0.246 1.246 14 H -0.254 1.254 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.039 4.039 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.073 4.073 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.376 0.624 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 2.631 0.396 2.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.238 2.762 3 C -0.560 4.560 4 C -0.555 4.555 5 C -0.357 4.357 6 O -0.213 6.213 7 C 0.091 3.909 8 C -0.100 4.100 9 C -0.182 4.182 10 O -0.340 6.340 11 Si 0.760 3.240 12 H -0.172 1.172 13 H -0.169 1.169 14 H -0.178 1.178 15 C -0.128 4.128 16 C -0.124 4.124 17 C -0.039 4.039 18 C -0.127 4.127 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.073 4.073 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.223 0.777 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.601 2.166 1.062 2.486 hybrid contribution -0.024 0.301 -0.006 0.302 sum 0.577 2.467 1.055 2.745 Atomic orbital electron populations 1.26073 1.20206 1.05129 1.04203 0.78829 0.67519 0.65427 0.64383 1.26133 1.06505 1.18374 1.04946 1.26052 1.06098 1.08639 1.14713 1.28474 1.04639 0.85260 1.17306 1.86254 1.79591 1.19218 1.36227 1.18409 0.91050 0.93775 0.87702 1.19227 0.95184 1.01192 0.94357 1.24581 0.92483 0.97366 1.03773 1.86570 1.28531 1.56720 1.62189 0.85913 0.80082 0.81647 0.76349 1.17166 1.16939 1.17829 1.20661 0.97572 0.97126 0.97429 1.20970 0.92948 0.99882 0.98601 1.18029 0.94754 0.97161 0.93946 1.21050 0.92506 0.99665 0.99480 1.20940 0.99662 0.98225 0.93928 1.20923 0.97012 0.97526 0.98258 1.20989 0.92899 0.99398 0.98037 1.18395 0.94114 0.99384 0.95416 0.91458 0.91150 0.90337 0.91039 0.90457 0.91064 0.90534 0.91201 0.91385 0.92197 0.92179 0.91051 0.77675 0.85598 0.84860 0.85210 0.85685 0.85693 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.68 8.65 101.05 0.87 1.55 16 2 Si 1.05 -2.51 12.97 -169.99 -2.20 -4.72 16 3 C -0.45 1.02 8.65 101.05 0.87 1.89 16 4 C -0.45 0.44 8.65 101.05 0.87 1.32 16 5 C -0.24 0.04 4.84 101.05 0.49 0.53 16 6 O -0.30 -0.79 7.90 -19.12 -0.15 -0.94 16 7 C 0.13 0.52 5.67 -39.12 -0.22 0.30 16 8 C -0.10 -0.33 5.27 -104.83 -0.55 -0.88 16 9 C -0.07 -0.09 2.31 36.00 0.08 -0.01 16 10 O -0.53 -0.91 12.86 -35.23 -0.45 -1.36 16 11 Si 0.94 0.28 25.44 -169.99 -4.33 -4.04 16 12 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 13 H -0.25 -0.31 6.72 56.52 0.38 0.07 16 14 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 15 C -0.11 -0.28 8.56 -39.96 -0.34 -0.62 16 16 C -0.11 -0.22 9.77 -39.46 -0.39 -0.60 16 17 C -0.04 -0.12 5.74 -106.84 -0.61 -0.73 16 18 C -0.11 -0.16 9.77 -39.48 -0.39 -0.55 16 19 C -0.11 -0.11 9.95 -39.93 -0.40 -0.51 16 20 C -0.12 -0.16 9.95 -39.92 -0.40 -0.55 16 21 C -0.10 -0.24 9.42 -39.52 -0.37 -0.61 16 22 C -0.07 -0.28 5.75 -106.73 -0.61 -0.89 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 25 H 0.08 -0.04 7.96 -51.93 -0.41 -0.46 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.06 -0.05 7.33 -51.93 -0.38 -0.43 16 33 H 0.06 -0.03 7.75 -51.93 -0.40 -0.44 16 34 H 0.07 -0.02 6.92 -51.93 -0.36 -0.38 16 35 H 0.38 -1.05 8.74 45.56 0.40 -0.65 16 36 H 0.13 0.12 4.78 -52.49 -0.25 -0.13 16 37 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 39 H 0.13 -0.15 8.06 -52.48 -0.42 -0.57 16 40 H 0.13 -0.10 8.06 -52.48 -0.42 -0.52 16 41 H 0.13 0.16 7.45 -52.49 -0.39 -0.23 16 LS Contribution 339.94 15.07 5.12 5.12 Total: 0.00 -5.99 339.94 -8.71 -14.70 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -5.62 Total: -8.40 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.09 Total: -0.36 kcal Atomic # 8 Polarization: -1.70 SS G_CDS: -0.60 Total: -2.30 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: -6.53 Total: -8.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -5.99 -8.71 -14.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.350 kcal (2) G-P(sol) polarization free energy of solvation -5.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds