Wall clock time and date at job start Mon Mar 8 2021 11:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86305 * 109.47088 * 2 1 4 4 C 1.86303 * 109.46993 * 240.00308 * 2 1 3 5 5 C 1.86295 * 109.47145 * 119.99897 * 2 1 3 6 6 O 1.42901 * 109.47125 * 64.67416 * 5 2 1 7 7 C 1.35802 * 116.99851 * 183.58765 * 6 5 2 8 8 C 1.36633 * 120.22697 * 93.91392 * 7 6 5 9 9 C 1.50698 * 119.53659 * 359.96961 * 8 7 6 10 10 O 1.42905 * 109.46994 * 75.00685 * 9 8 7 11 11 Si 1.86295 * 109.47386 * 195.00636 * 9 8 7 12 12 H 1.48500 * 109.47324 * 60.00277 * 11 9 8 13 13 H 1.48503 * 109.47322 * 300.00110 * 11 9 8 14 14 H 1.48505 * 109.47207 * 180.02562 * 11 9 8 15 15 C 1.39244 * 120.93189 * 180.25545 * 8 7 6 16 16 C 1.36140 * 121.05805 * 359.40763 * 15 8 7 17 17 C 1.40570 * 119.76621 * 0.59939 * 16 15 8 18 18 C 1.40504 * 121.26641 * 179.70622 * 17 16 15 19 19 C 1.36143 * 119.64991 * 179.97438 * 18 17 16 20 20 C 1.39316 * 120.97276 * 0.02636 * 19 18 17 21 21 C 1.36173 * 120.97279 * 359.92754 * 20 19 18 22 22 C 1.40365 * 119.66441 * 0.09005 * 21 20 19 23 23 H 1.09000 * 109.47149 * 295.01899 * 1 2 3 24 24 H 1.09003 * 109.47597 * 55.01908 * 1 2 3 25 25 H 1.09000 * 109.47282 * 175.02071 * 1 2 3 26 26 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47029 * 300.00458 * 3 2 1 28 28 H 1.08999 * 109.46806 * 59.99916 * 3 2 1 29 29 H 1.08996 * 109.46993 * 304.98187 * 4 2 1 30 30 H 1.08994 * 109.47374 * 64.98880 * 4 2 1 31 31 H 1.09000 * 109.46837 * 184.98777 * 4 2 1 32 32 H 1.09000 * 109.47542 * 304.66959 * 5 2 1 33 33 H 1.09004 * 109.47151 * 184.66949 * 5 2 1 34 34 H 1.08997 * 109.47360 * 315.00635 * 9 8 7 35 35 H 0.96701 * 113.99935 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.47010 * 179.72081 * 15 8 7 37 37 H 1.07990 * 120.11820 * 180.26430 * 16 15 8 38 38 H 1.07995 * 120.17929 * 0.02562 * 18 17 16 39 39 H 1.08005 * 119.51130 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.51044 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.16389 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0994 -2.2534 1.4675 7 6 2.4108 -3.0230 2.5422 8 6 1.5000 -3.2064 3.5440 9 6 0.1477 -2.5482 3.4483 10 8 -0.6561 -3.2476 2.4961 11 14 -0.6839 -2.5924 5.1147 12 1 0.1514 -1.8656 6.1043 13 1 -0.8496 -4.0031 5.5480 14 1 -2.0167 -1.9443 5.0202 15 6 1.8057 -3.9881 4.6551 16 6 3.0153 -4.6020 4.7706 17 6 3.9803 -4.4381 3.7616 18 6 5.2409 -5.0520 3.8515 19 6 6.1506 -4.8715 2.8548 20 6 5.8510 -4.0851 1.7445 21 6 4.6392 -3.4758 1.6236 22 6 3.6761 -3.6388 2.6317 23 1 -0.3633 0.4346 0.9312 24 1 -0.3634 0.5892 -0.8420 25 1 -0.3634 -1.0238 -0.0892 26 1 3.5740 1.7565 -0.0005 27 1 2.1205 2.2704 -0.8900 28 1 2.1206 2.2703 0.8900 29 1 2.0496 -1.8768 -1.5670 30 1 2.1954 -0.3153 -2.4089 31 1 3.5703 -0.9562 -1.4776 32 1 2.0540 -0.4150 2.4092 33 1 3.5708 -0.8063 1.5639 34 1 0.2693 -1.5127 3.1304 35 1 -1.5423 -2.8777 2.3823 36 1 1.0696 -4.1135 5.4353 37 1 3.2348 -5.2083 5.6368 38 1 5.4867 -5.6647 4.7062 39 1 7.1187 -5.3448 2.9260 40 1 6.5905 -3.9575 0.9678 41 1 4.4207 -2.8694 0.7571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:53 Heat of formation + Delta-G solvation = -58.741521 kcal Electronic energy + Delta-G solvation = -21496.828327 eV Core-core repulsion = 18465.694579 eV Total energy + Delta-G solvation = -3031.133749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81358 -39.24975 -38.04077 -36.77895 -33.05307 -32.00028 -30.27643 -29.53081 -28.31919 -28.27736 -27.69811 -26.31725 -24.40380 -22.90121 -22.65433 -19.11800 -18.54110 -18.43836 -17.64041 -16.84449 -16.23793 -16.03229 -15.91270 -15.32723 -15.12403 -14.56354 -14.47995 -14.35502 -14.09921 -14.06393 -13.79277 -13.72456 -13.59370 -13.23666 -13.16718 -13.12427 -12.96503 -12.85532 -12.35159 -12.11728 -12.09945 -11.96804 -11.73608 -11.04048 -10.87431 -10.76408 -10.72019 -10.64142 -10.23699 -9.66717 -8.79630 -0.56420 -0.12096 0.90272 1.10921 1.40870 1.44998 1.58192 1.83306 1.85862 1.95813 1.97514 2.64180 2.91054 3.13575 3.46646 3.63344 3.84138 3.87216 4.01576 4.14035 4.23674 4.30500 4.35204 4.39841 4.46613 4.61437 4.72989 4.82138 4.82953 4.87557 4.88057 4.90421 4.91547 4.95268 5.02887 5.10034 5.13166 5.33871 5.52528 5.55301 5.57476 5.62784 5.67144 5.70290 5.95054 6.49019 6.83420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.110 2.890 3 C -0.456 4.456 4 C -0.463 4.463 5 C -0.258 4.258 6 O -0.307 6.307 7 C 0.115 3.885 8 C -0.117 4.117 9 C -0.079 4.079 10 O -0.555 6.555 11 Si 0.973 3.027 12 H -0.256 1.256 13 H -0.261 1.261 14 H -0.248 1.248 15 C -0.126 4.126 16 C -0.109 4.109 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.095 4.095 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.393 0.607 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 3.042 0.710 3.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.299 2.701 3 C -0.565 4.565 4 C -0.570 4.570 5 C -0.373 4.373 6 O -0.223 6.223 7 C 0.071 3.929 8 C -0.117 4.117 9 C -0.188 4.188 10 O -0.363 6.363 11 Si 0.796 3.204 12 H -0.180 1.180 13 H -0.186 1.186 14 H -0.172 1.172 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.060 4.060 18 C -0.132 4.132 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.095 4.095 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.934 2.571 1.367 3.058 hybrid contribution -0.088 0.150 -0.133 0.219 sum 0.846 2.720 1.234 3.104 Atomic orbital electron populations 1.26213 1.21217 1.04544 1.04757 0.77879 0.66051 0.64434 0.61766 1.26171 1.06692 1.18189 1.05403 1.26265 1.06231 1.08206 1.16267 1.28925 1.04981 0.84276 1.19118 1.86228 1.79764 1.20256 1.36088 1.18659 0.91472 0.94489 0.88310 1.19565 0.96087 1.01531 0.94552 1.24749 0.91852 0.97614 1.04590 1.86519 1.29868 1.57438 1.62500 0.85412 0.79719 0.80371 0.74942 1.17951 1.18596 1.17202 1.20891 0.98220 0.97475 0.97728 1.21290 0.92585 0.99705 0.99083 1.18339 0.95827 0.97642 0.94159 1.21363 0.91915 0.99532 1.00382 1.21278 1.00600 0.97946 0.93505 1.21239 0.96886 0.96802 0.98891 1.21137 0.93474 1.00349 0.98225 1.18686 0.94596 0.99995 0.96234 0.90816 0.90689 0.91474 0.90879 0.90007 0.90595 0.91991 0.90729 0.91343 0.91735 0.92195 0.89981 0.75689 0.84535 0.82526 0.83044 0.83317 0.83714 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.28 8.65 113.37 0.98 2.26 16 2 Si 1.11 -4.97 12.97 68.60 0.89 -4.08 16 3 C -0.46 2.33 8.65 113.37 0.98 3.31 16 4 C -0.46 0.50 8.65 113.37 0.98 1.48 16 5 C -0.26 -0.19 4.84 113.37 0.55 0.36 16 6 O -0.31 -2.16 7.90 -91.33 -0.72 -2.89 16 7 C 0.11 1.10 5.67 22.57 0.13 1.23 16 8 C -0.12 -0.94 5.27 -20.00 -0.11 -1.05 16 9 C -0.08 -0.27 2.31 71.24 0.16 -0.10 16 10 O -0.55 -2.44 12.86 -148.98 -1.92 -4.36 16 11 Si 0.97 0.81 25.44 68.60 1.75 2.55 16 12 H -0.26 -0.45 7.11 99.48 0.71 0.25 16 13 H -0.26 -0.82 6.72 99.48 0.67 -0.15 16 14 H -0.25 0.10 7.11 99.48 0.71 0.81 16 15 C -0.13 -0.77 8.56 22.02 0.19 -0.58 16 16 C -0.11 -0.52 9.77 22.35 0.22 -0.31 16 17 C -0.06 -0.42 5.74 -21.30 -0.12 -0.54 16 18 C -0.11 -0.32 9.77 22.33 0.22 -0.10 16 19 C -0.12 -0.18 9.95 22.04 0.22 0.04 16 20 C -0.12 -0.34 9.95 22.05 0.22 -0.12 16 21 C -0.11 -0.73 9.42 22.31 0.21 -0.52 16 22 C -0.09 -0.88 5.75 -21.23 -0.12 -1.00 16 23 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 24 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 25 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 26 H 0.07 -0.37 7.96 -2.39 -0.02 -0.38 16 27 H 0.08 -0.45 7.96 -2.38 -0.02 -0.47 16 28 H 0.07 -0.43 7.96 -2.39 -0.02 -0.44 16 29 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 30 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 32 H 0.06 -0.05 7.33 -2.39 -0.02 -0.06 16 33 H 0.06 0.02 7.75 -2.38 -0.02 0.00 16 34 H 0.08 0.02 6.92 -2.39 -0.02 0.00 16 35 H 0.39 -1.97 8.74 -74.06 -0.65 -2.61 16 36 H 0.14 0.38 4.78 -2.91 -0.01 0.36 16 37 H 0.16 -0.20 8.06 -2.92 -0.02 -0.23 16 38 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 39 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 40 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 0.59 7.45 -2.91 -0.02 0.57 16 Total: 0.00 -14.72 339.94 5.79 -8.93 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: 1.08 Total: -4.52 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 4.71 Total: 4.35 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -2.64 Total: -7.24 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.63 Total: -1.52 kcal Total: -14.72 5.79 -8.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.810 kcal (2) G-P(sol) polarization free energy of solvation -14.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds