Wall clock time and date at job start Mon Mar 8 2021 12:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46996 * 2 1 4 4 C 1.50702 * 109.47263 * 119.99888 * 2 1 3 5 5 C 1.38702 * 119.99400 * 74.99752 * 4 2 1 6 6 O 1.35922 * 120.03500 * 0.02632 * 5 4 2 7 7 C 1.42903 * 117.00166 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47094 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46870 * 305.00019 * 8 7 6 10 10 C 1.53002 * 109.47346 * 64.99836 * 8 7 6 11 11 C 1.52996 * 109.46972 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47165 * 300.00293 * 11 10 8 13 13 H 1.09000 * 109.47140 * 299.99954 * 12 11 10 14 14 O 1.42905 * 109.47266 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47592 * 60.00300 * 12 11 10 16 16 C 1.52997 * 109.46975 * 185.00241 * 8 7 6 17 17 C 1.38713 * 119.93736 * 180.29922 * 5 4 2 18 18 C 1.38333 * 119.93315 * 359.44876 * 17 5 4 19 19 F 1.35094 * 120.00691 * 180.25622 * 18 17 5 20 20 C 1.38618 * 119.98943 * 0.55513 * 18 17 5 21 21 Cl 1.73603 * 119.96668 * 179.70159 * 20 18 17 22 22 C 1.38184 * 119.99687 * 255.02472 * 4 2 1 23 23 H 0.96697 * 114.00129 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46893 * 240.00370 * 2 1 3 25 25 H 1.48502 * 110.00012 * 180.02562 * 3 2 1 26 26 H 1.48498 * 110.00054 * 301.31903 * 3 2 1 27 27 H 1.08998 * 109.46563 * 60.00042 * 7 6 5 28 28 H 1.09001 * 109.46828 * 300.00248 * 7 6 5 29 29 H 1.08992 * 109.46974 * 300.00318 * 10 8 7 30 30 H 1.08996 * 109.46550 * 60.00424 * 10 8 7 31 31 H 1.09000 * 109.47054 * 60.00300 * 11 10 8 32 32 H 1.09001 * 109.46997 * 180.02562 * 11 10 8 33 33 H 0.96705 * 113.99792 * 59.99753 * 14 12 11 34 34 H 1.08993 * 109.47839 * 180.02562 * 15 12 11 35 35 H 1.09000 * 109.47160 * 59.99666 * 15 12 11 36 36 H 1.09001 * 109.46922 * 59.99912 * 16 8 7 37 37 H 1.09000 * 109.47140 * 299.99612 * 16 8 7 38 38 H 1.07993 * 120.03873 * 179.71142 * 17 5 4 39 39 H 1.08006 * 119.97016 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8694 -2.0939 1.3063 6 8 1.3561 -2.8097 0.2710 7 6 1.3239 -4.2308 0.4176 8 6 0.7182 -4.8595 -0.8388 9 1 -0.2608 -4.4199 -1.0293 10 6 1.6365 -4.5967 -2.0341 11 6 1.0312 -5.2260 -3.2904 12 6 0.8819 -6.7346 -3.0838 13 1 1.8611 -7.1739 -2.8932 14 8 0.3170 -7.3225 -4.2575 15 6 -0.0364 -6.9975 -1.8887 16 6 0.5685 -6.3681 -0.6327 17 6 2.3264 -2.7462 2.4420 18 6 2.8536 -2.0163 3.4921 19 9 3.3039 -2.6504 4.5967 20 6 2.9142 -0.6337 3.4134 21 17 3.5689 0.2823 4.7348 22 6 2.4532 0.0167 2.2833 23 1 -0.3933 -0.8834 -0.0004 24 1 1.7923 -0.5138 -0.8900 25 1 3.5349 1.7702 -0.0006 26 1 1.5354 2.4771 -1.1921 27 1 0.7169 -4.4928 1.2842 28 1 2.3381 -4.6047 0.5579 29 1 1.7432 -3.5220 -2.1808 30 1 2.6155 -5.0364 -1.8436 31 1 0.0520 -4.7867 -3.4810 32 1 1.6856 -5.0391 -4.1418 33 1 0.8477 -7.1949 -5.0558 34 1 -0.1424 -8.0722 -1.7412 35 1 -1.0156 -6.5582 -2.0793 36 1 -0.0858 -6.5553 0.2188 37 1 1.5475 -6.8078 -0.4423 38 1 2.2746 -3.8231 2.5046 39 1 2.5012 1.0941 2.2237 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10548606_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:43:27 Heat of formation + Delta-G solvation = -156.986619 kcal Electronic energy + Delta-G solvation = -24737.812221 eV Core-core repulsion = 20780.066050 eV Total energy + Delta-G solvation = -3957.746171 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.20853 -41.74320 -40.19256 -38.88623 -37.87402 -37.18626 -36.66324 -32.73327 -32.17946 -31.84706 -30.81430 -26.95781 -26.69884 -24.13710 -23.79493 -22.99758 -22.14202 -20.89904 -19.78656 -18.68529 -18.30607 -18.20849 -17.53451 -17.34254 -17.04670 -16.81776 -16.43047 -15.72228 -15.68065 -15.58453 -15.51329 -14.86221 -14.71821 -14.51500 -14.25897 -14.00396 -13.88401 -13.61024 -13.24834 -13.23642 -13.02193 -12.97401 -12.39426 -12.24813 -12.14501 -12.13083 -11.79725 -11.68267 -11.55208 -11.41545 -11.22615 -11.11836 -10.74516 -10.23036 -9.39538 -4.93266 -0.32899 -0.19073 0.90007 1.31719 1.59402 1.83994 1.93558 2.08569 2.80112 3.19292 3.30166 3.43213 3.60455 3.63034 3.68586 3.73904 3.85976 4.01227 4.03560 4.12617 4.19793 4.23814 4.31146 4.32954 4.43380 4.45679 4.48962 4.54561 4.57106 4.71167 4.78331 4.80936 4.95285 5.04149 5.06580 5.12298 5.15751 5.20019 5.30183 5.41157 6.03126 6.58309 6.82373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.069 4.069 3 Si 0.793 3.207 4 C -0.151 4.151 5 C 0.180 3.820 6 O -0.306 6.306 7 C 0.054 3.946 8 C -0.082 4.082 9 H 0.081 0.919 10 C -0.109 4.109 11 C -0.147 4.147 12 C 0.100 3.900 13 H 0.061 0.939 14 O -0.591 6.591 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.230 4.230 18 C 0.144 3.856 19 F -0.128 7.128 20 C -0.117 4.117 21 Cl -0.048 7.048 22 C -0.035 4.035 23 H 0.376 0.624 24 H 0.080 0.920 25 H -0.260 1.260 26 H -0.291 1.291 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.171 0.829 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -1.784 -0.699 1.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.178 4.178 3 Si 0.695 3.305 4 C -0.152 4.152 5 C 0.133 3.867 6 O -0.219 6.219 7 C -0.021 4.021 8 C -0.100 4.100 9 H 0.100 0.900 10 C -0.147 4.147 11 C -0.185 4.185 12 C 0.041 3.959 13 H 0.079 0.921 14 O -0.400 6.400 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.249 4.249 18 C 0.123 3.877 19 F -0.107 7.107 20 C -0.144 4.144 21 Cl -0.019 7.019 22 C -0.053 4.053 23 H 0.225 0.775 24 H 0.098 0.902 25 H -0.186 1.186 26 H -0.219 1.219 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.242 0.758 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.189 0.811 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.640 -0.632 -0.727 1.156 hybrid contribution 0.610 -1.690 -0.615 1.899 sum 1.249 -2.322 -1.342 2.959 Atomic orbital electron populations 1.86716 1.16909 1.34251 1.97095 1.25356 0.84869 1.13098 0.94428 0.92338 0.77196 0.74491 0.86521 1.19745 1.05700 0.91010 0.98778 1.18515 0.91374 0.90455 0.86393 1.86082 1.76484 1.21408 1.37886 1.23236 1.02609 0.76255 0.99968 1.21176 1.00121 0.95710 0.93001 0.90015 1.21498 0.98731 1.00995 0.93472 1.22215 1.01698 0.95830 0.98781 1.21938 0.96374 0.91978 0.85603 0.92074 1.86486 1.53808 1.79656 1.20038 1.21457 0.98978 1.01421 0.93283 1.21431 1.02552 0.92743 0.97445 1.21311 1.07603 1.02593 0.93392 1.17266 0.97466 0.88661 0.84270 1.91558 1.86408 1.81996 1.50722 1.20877 1.09041 0.90572 0.93954 1.98407 1.84466 1.73167 1.45864 1.20778 0.94148 1.00999 0.89359 0.77517 0.90244 1.18558 1.21854 0.89789 0.90277 0.91569 0.91160 0.92011 0.91051 0.75789 0.91325 0.91941 0.89677 0.90350 0.81136 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.59 12.65 -148.98 -1.89 -2.48 16 2 C -0.07 0.02 2.33 71.24 0.17 0.19 16 3 Si 0.79 -0.70 30.17 68.60 2.07 1.36 16 4 C -0.15 0.08 5.28 -19.77 -0.10 -0.03 16 5 C 0.18 -0.27 6.62 22.49 0.15 -0.12 16 6 O -0.31 1.06 8.57 -92.68 -0.79 0.27 16 7 C 0.05 -0.40 4.12 71.98 0.30 -0.10 16 8 C -0.08 0.54 2.43 -10.80 -0.03 0.52 16 9 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 10 C -0.11 0.57 5.10 30.59 0.16 0.72 16 11 C -0.15 0.54 5.54 30.59 0.17 0.71 16 12 C 0.10 -0.22 3.47 30.59 0.11 -0.11 16 13 H 0.06 -0.23 8.14 -2.39 -0.02 -0.24 16 14 O -0.59 -0.71 13.32 -148.98 -1.98 -2.69 16 15 C -0.11 0.31 5.57 30.58 0.17 0.48 16 16 C -0.10 0.75 5.20 30.58 0.16 0.91 16 17 C -0.23 0.39 9.01 22.41 0.20 0.59 16 18 C 0.14 0.29 7.27 22.38 0.16 0.46 16 19 F -0.13 -0.58 16.83 44.97 0.76 0.17 16 20 C -0.12 -0.22 6.33 22.37 0.14 -0.08 16 21 Cl -0.05 -0.14 28.61 -2.72 -0.08 -0.22 16 22 C -0.03 0.02 8.43 22.27 0.19 0.21 16 23 H 0.38 -1.14 8.60 -74.06 -0.64 -1.78 16 24 H 0.08 -0.04 7.83 -2.39 -0.02 -0.06 16 25 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 26 H -0.29 -1.73 7.11 99.48 0.71 -1.02 16 27 H 0.08 -0.80 7.65 -2.39 -0.02 -0.82 16 28 H 0.08 -0.71 7.67 -2.39 -0.02 -0.73 16 29 H 0.07 -0.22 7.82 -2.39 -0.02 -0.24 16 30 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.39 -2.48 9.08 -74.05 -0.67 -3.15 16 34 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 35 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.17 -1.05 6.30 -2.91 -0.02 -1.07 16 39 H 0.17 -0.82 5.13 -2.91 -0.01 -0.83 16 Total: 0.00 -11.64 334.43 -0.16 -11.79 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.18 Total: -12.55 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 1.94 Total: 4.34 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -4.66 Total: -4.90 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.76 Total: 0.17 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.07 Total: 1.36 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -11.64 -0.16 -11.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10548606_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.195 kcal (2) G-P(sol) polarization free energy of solvation -11.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds