Wall clock time and date at job start Mon Mar 8 2021 12:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53001 * 109.46979 * 239.99724 * 2 1 3 5 5 Si 1.86301 * 109.46884 * 120.00019 * 2 1 3 6 6 C 1.86301 * 109.47166 * 299.99644 * 5 2 1 7 7 C 1.86303 * 109.46965 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47483 * 59.99662 * 5 2 1 9 9 C 1.42898 * 114.00163 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47221 * 180.02562 * 9 8 5 11 11 O 1.42906 * 109.47469 * 64.99647 * 10 9 8 12 12 C 1.42895 * 114.00331 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47062 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.46930 * 65.00212 * 13 12 11 15 15 C 1.35919 * 116.99677 * 179.97438 * 14 13 12 16 16 C 1.38675 * 120.02971 * 359.97438 * 15 14 13 17 17 C 1.38372 * 119.93014 * 180.02562 * 16 15 14 18 18 F 1.35102 * 120.00274 * 180.02562 * 17 16 15 19 19 C 1.38563 * 119.99645 * 359.97438 * 17 16 15 20 20 Cl 1.73594 * 119.97106 * 179.97438 * 19 17 16 21 21 C 1.38335 * 120.06293 * 359.97438 * 19 17 16 22 22 C 1.38148 * 120.06829 * 359.97438 * 21 19 17 23 23 C 1.50699 * 120.00286 * 180.02562 * 22 21 19 24 24 O 1.42896 * 109.47357 * 104.99707 * 23 22 21 25 25 Si 1.86304 * 109.46720 * 344.99793 * 23 22 21 26 26 H 1.48505 * 109.47073 * 60.00122 * 25 23 22 27 27 H 1.48498 * 109.46789 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47204 * 300.00072 * 25 23 22 29 29 H 1.08996 * 109.46927 * 300.00359 * 1 2 3 30 30 H 1.09000 * 109.46948 * 59.99799 * 1 2 3 31 31 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46985 * 299.99344 * 3 2 1 34 34 H 1.08996 * 109.47439 * 59.99955 * 3 2 1 35 35 H 1.08998 * 109.47082 * 300.00121 * 4 2 1 36 36 H 1.08993 * 109.47063 * 60.00080 * 4 2 1 37 37 H 1.08999 * 109.46829 * 180.02562 * 4 2 1 38 38 H 1.08993 * 109.47157 * 180.02562 * 6 5 2 39 39 H 1.09007 * 109.46914 * 300.00503 * 6 5 2 40 40 H 1.08999 * 109.46778 * 59.99775 * 6 5 2 41 41 H 1.08996 * 109.46990 * 299.99711 * 7 5 2 42 42 H 1.08998 * 109.47169 * 59.99725 * 7 5 2 43 43 H 1.09007 * 109.47132 * 179.97438 * 7 5 2 44 44 H 1.08997 * 109.47180 * 60.00296 * 9 8 5 45 45 H 1.09000 * 109.46893 * 299.99705 * 9 8 5 46 46 H 1.08998 * 109.46917 * 305.00134 * 10 9 8 47 47 H 1.08999 * 109.47626 * 184.99817 * 10 9 8 48 48 H 1.09000 * 109.46821 * 60.00032 * 12 11 10 49 49 H 1.09002 * 109.47226 * 300.00460 * 12 11 10 50 50 H 1.08995 * 109.47113 * 305.00196 * 13 12 11 51 51 H 1.09005 * 109.46708 * 184.99851 * 13 12 11 52 52 H 1.08001 * 120.03542 * 0.04299 * 16 15 14 53 53 H 1.07997 * 119.97004 * 179.72765 * 21 19 17 54 54 H 1.08998 * 109.47276 * 225.00226 * 23 22 21 55 55 H 0.96697 * 113.99754 * 60.00196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6072 -2.4159 1.5213 9 6 2.0284 -3.1813 2.6521 10 6 1.4635 -4.5993 2.5472 11 8 2.0328 -5.2562 1.4129 12 6 1.5688 -6.5943 1.2227 13 6 2.2413 -7.1964 -0.0127 14 8 3.6466 -7.3129 0.2191 15 6 4.3968 -7.8343 -0.7872 16 6 3.7923 -8.2259 -1.9723 17 6 4.5580 -8.7569 -2.9953 18 9 3.9707 -9.1384 -4.1506 19 6 5.9272 -8.8965 -2.8350 20 17 6.8870 -9.5634 -4.1185 21 6 6.5301 -8.5049 -1.6532 22 6 5.7684 -7.9734 -0.6305 23 6 6.4268 -7.5467 0.6561 24 8 6.5037 -6.1205 0.7018 25 14 8.1439 -8.2642 0.7426 26 1 8.9437 -7.7745 -0.4089 27 1 8.7929 -7.8433 2.0102 28 1 8.0640 -9.7463 0.6952 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.8936 -0.5135 3.9322 39 1 1.8934 1.0278 3.0422 40 1 0.4400 0.0001 3.0422 41 1 4.3769 -1.3931 0.6309 42 1 4.3777 0.1486 1.5205 43 1 4.3773 -1.3924 2.4111 44 1 1.6635 -2.7111 3.5653 45 1 3.1172 -3.2252 2.6760 46 1 0.3805 -4.5515 2.4337 47 1 1.7098 -5.1564 3.4512 48 1 0.4880 -6.5874 1.0815 49 1 1.8169 -7.1930 2.0992 50 1 2.0673 -6.5497 -0.8726 51 1 1.8225 -8.1834 -0.2096 52 1 2.7251 -8.1161 -2.0968 53 1 7.5968 -8.6184 -1.5282 54 1 5.8398 -7.9062 1.5013 55 1 5.6444 -5.6788 0.6608 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10548606_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:49:02 Heat of formation + Delta-G solvation = -236.776522 kcal Electronic energy + Delta-G solvation = -35575.818602 eV Core-core repulsion = 30677.336851 eV Total energy + Delta-G solvation = -4898.481751 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 408.154 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.21431 -41.65449 -39.45444 -38.72319 -37.86894 -37.35496 -37.08291 -36.80781 -32.75107 -32.21675 -30.83282 -29.64805 -29.15351 -29.03653 -27.82590 -27.36040 -26.68768 -25.12852 -23.40586 -23.22366 -22.72198 -20.39704 -19.93353 -18.70385 -18.36887 -18.05013 -17.91160 -17.51627 -17.24161 -16.97096 -16.47216 -16.43623 -16.19671 -16.06041 -15.78785 -15.61097 -15.35567 -15.23425 -14.83693 -14.76808 -14.69247 -14.37193 -14.30191 -13.97340 -13.90938 -13.68860 -13.49313 -13.33527 -13.30171 -13.15842 -13.03539 -12.94046 -12.91369 -12.74379 -12.51911 -12.39703 -12.27788 -12.24891 -12.17637 -11.88945 -11.76890 -11.70513 -11.64560 -11.46836 -11.35541 -11.14608 -11.06115 -10.50837 -10.26057 -10.23512 -10.02726 -9.38663 -0.32896 -0.20091 0.86412 1.16679 1.48897 1.51296 1.58444 1.83264 1.88522 1.95252 2.09088 2.17177 2.52670 2.71578 2.79482 3.29062 3.44604 3.67609 3.88684 3.91079 4.01410 4.12956 4.13597 4.14122 4.17922 4.25629 4.28761 4.37110 4.42741 4.46889 4.50899 4.53687 4.59172 4.63748 4.68261 4.72599 4.76240 4.78689 4.81339 4.81928 4.83182 4.84491 4.85941 4.88994 5.01143 5.10106 5.10641 5.20856 5.22085 5.35427 5.42324 5.45865 5.56795 5.62971 5.67002 6.04450 6.31940 6.63782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.319 2.681 6 C -0.516 4.516 7 C -0.519 4.519 8 O -0.634 6.634 9 C 0.073 3.927 10 C 0.056 3.944 11 O -0.396 6.396 12 C 0.059 3.941 13 C 0.049 3.951 14 O -0.299 6.299 15 C 0.186 3.814 16 C -0.228 4.228 17 C 0.145 3.855 18 F -0.128 7.128 19 C -0.118 4.118 20 Cl -0.053 7.053 21 C -0.053 4.053 22 C -0.149 4.149 23 C -0.078 4.078 24 O -0.548 6.548 25 Si 1.017 2.983 26 H -0.260 1.260 27 H -0.265 1.265 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.106 0.894 52 H 0.174 0.826 53 H 0.156 0.844 54 H 0.096 0.904 55 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -0.387 5.874 7.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.448 2.552 6 C -0.618 4.618 7 C -0.620 4.620 8 O -0.593 6.593 9 C -0.002 4.002 10 C -0.021 4.021 11 O -0.316 6.316 12 C -0.017 4.017 13 C -0.026 4.026 14 O -0.211 6.211 15 C 0.138 3.862 16 C -0.248 4.248 17 C 0.125 3.875 18 F -0.106 7.106 19 C -0.146 4.146 20 Cl -0.024 7.024 21 C -0.071 4.071 22 C -0.150 4.150 23 C -0.187 4.187 24 O -0.355 6.355 25 Si 0.837 3.163 26 H -0.185 1.185 27 H -0.189 1.189 28 H -0.158 1.158 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.124 0.876 52 H 0.192 0.808 53 H 0.173 0.827 54 H 0.114 0.886 55 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.720 -0.957 5.717 6.403 hybrid contribution -1.252 0.593 -0.803 1.601 sum -3.972 -0.364 4.914 6.329 Atomic orbital electron populations 1.21524 0.94134 1.01752 1.01816 1.25943 1.00492 1.02919 1.13251 1.21604 1.01161 0.94829 1.02213 1.21512 1.00781 0.99966 0.96949 0.76148 0.62090 0.52980 0.64011 1.27078 1.06951 1.09763 1.18042 1.27149 1.25934 1.04615 1.04332 1.85387 1.79258 1.46371 1.48330 1.22322 0.99571 0.90760 0.87540 1.22797 0.98266 0.92001 0.88994 1.87973 1.68319 1.26623 1.48644 1.22667 0.98407 0.83552 0.97115 1.23303 0.77216 1.02343 0.99691 1.86158 1.21418 1.76459 1.37104 1.18485 0.90138 0.90859 0.86722 1.21343 1.02703 1.07761 0.92960 1.17228 0.89113 0.98124 0.83084 1.91558 1.84057 1.88534 1.46501 1.20852 0.90759 1.09424 0.93580 1.98397 1.70874 1.84013 1.49125 1.20865 1.01059 0.95298 0.89909 1.19751 0.91155 1.05359 0.98769 1.25199 1.13352 0.85631 0.94469 1.86666 1.35608 1.16504 1.96715 0.84458 0.72531 0.79034 0.80264 1.18488 1.18915 1.15758 0.91943 0.93499 0.92497 0.92062 0.93234 0.91656 0.92655 0.93477 0.92514 0.90765 0.90549 0.90942 0.91673 0.90725 0.91097 0.89212 0.91525 0.91861 0.90176 0.89069 0.91149 0.90344 0.87640 0.80826 0.82656 0.88575 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.38 0.00 0.53 -10.79 -0.01 0.00 16 3 C -0.14 0.09 7.85 71.98 0.56 0.66 16 4 C -0.13 -0.24 7.85 71.98 0.56 0.32 16 5 Si 1.32 -3.16 8.45 68.60 0.58 -2.58 16 6 C -0.52 1.57 8.50 113.37 0.96 2.53 16 7 C -0.52 0.34 8.50 113.37 0.96 1.31 16 8 O -0.63 0.06 8.52 -144.35 -1.23 -1.17 16 9 C 0.07 -0.27 5.50 71.98 0.40 0.12 16 10 C 0.06 -0.25 6.32 71.98 0.45 0.20 16 11 O -0.40 0.39 10.27 -135.06 -1.39 -1.00 16 12 C 0.06 -0.38 6.32 71.98 0.45 0.07 16 13 C 0.05 -0.31 5.12 71.98 0.37 0.06 16 14 O -0.30 0.56 9.01 -88.00 -0.79 -0.23 16 15 C 0.19 0.03 6.62 22.50 0.15 0.18 16 16 C -0.23 0.04 9.01 22.41 0.20 0.24 16 17 C 0.14 0.58 7.27 22.38 0.16 0.74 16 18 F -0.13 -0.79 16.83 44.97 0.76 -0.04 16 19 C -0.12 -0.57 6.32 22.37 0.14 -0.43 16 20 Cl -0.05 -0.31 28.61 -2.72 -0.08 -0.39 16 21 C -0.05 -0.16 8.44 22.27 0.19 0.03 16 22 C -0.15 -0.24 5.28 -19.76 -0.10 -0.35 16 23 C -0.08 -0.04 2.33 71.24 0.17 0.13 16 24 O -0.55 -1.68 12.65 -148.98 -1.89 -3.56 16 25 Si 1.02 0.66 25.74 68.60 1.77 2.42 16 26 H -0.26 -0.64 6.73 99.48 0.67 0.03 16 27 H -0.26 -0.76 7.11 99.48 0.71 -0.06 16 28 H -0.23 0.25 7.11 99.48 0.71 0.95 16 29 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 30 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 32 H 0.06 -0.10 7.79 -2.38 -0.02 -0.12 16 33 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 34 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 35 H 0.05 0.15 7.96 -2.39 -0.02 0.13 16 36 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 0.06 7.79 -2.39 -0.02 0.05 16 38 H 0.07 -0.33 7.48 -2.39 -0.02 -0.35 16 39 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 40 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 41 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 42 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 43 H 0.07 -0.11 7.48 -2.38 -0.02 -0.13 16 44 H 0.09 -0.75 7.21 -2.39 -0.02 -0.77 16 45 H 0.07 -0.29 7.21 -2.39 -0.02 -0.31 16 46 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 49 H 0.07 -0.58 8.14 -2.39 -0.02 -0.59 16 50 H 0.08 -0.46 7.66 -2.39 -0.02 -0.48 16 51 H 0.11 -1.14 7.66 -2.38 -0.02 -1.16 16 52 H 0.17 -0.90 6.30 -2.91 -0.02 -0.92 16 53 H 0.16 0.17 4.88 -2.91 -0.01 0.15 16 54 H 0.10 -0.25 7.82 -2.39 -0.02 -0.27 16 55 H 0.38 -0.05 8.61 -74.06 -0.64 -0.68 16 Total: 0.00 -12.24 458.23 4.89 -7.35 By element: Atomic # 1 Polarization: -8.11 SS G_CDS: 0.97 Total: -7.14 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 6.20 Total: 6.34 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -5.30 Total: -5.97 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.76 Total: -0.04 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.35 Total: -0.15 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -12.24 4.89 -7.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10548606_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.431 kcal (2) G-P(sol) polarization free energy of solvation -12.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds