Wall clock time and date at job start Mon Mar 8 2021 13:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35925 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38667 * 120.03095 * 359.97438 * 13 12 11 15 15 C 1.38372 * 119.93715 * 180.02562 * 14 13 12 16 16 F 1.35091 * 120.00683 * 180.02562 * 15 14 13 17 17 C 1.38569 * 119.98840 * 0.02562 * 15 14 13 18 18 Cl 1.73601 * 119.96859 * 179.97438 * 17 15 14 19 19 C 1.38337 * 120.06632 * 0.02562 * 17 15 14 20 20 C 1.38150 * 120.06250 * 359.72171 * 19 17 15 21 21 C 1.50706 * 119.99773 * 180.29765 * 20 19 17 22 22 O 1.42889 * 109.47080 * 105.25308 * 21 20 19 23 23 Si 1.86307 * 109.46998 * 345.25558 * 21 20 19 24 24 H 1.48500 * 109.46942 * 59.99982 * 23 21 20 25 25 H 1.48491 * 109.46894 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47027 * 300.00065 * 23 21 20 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.08009 * 120.03572 * 359.97438 * 14 13 12 49 49 H 1.08001 * 119.97068 * 179.97438 * 19 17 15 50 50 H 1.09004 * 109.47141 * 225.25818 * 21 20 19 51 51 H 0.96697 * 114.00309 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6068 4.6627 14 6 2.4937 -7.1876 5.7181 15 6 2.8082 -8.0682 6.7380 16 9 3.5830 -7.6612 7.7671 17 6 2.3283 -9.3677 6.7036 18 17 2.7237 -10.4723 7.9831 19 6 1.5352 -9.7860 5.6502 20 6 1.2154 -8.9073 4.6332 21 6 0.3458 -9.3626 3.4897 22 8 -0.9637 -8.8106 3.6380 23 14 0.2397 -11.2227 3.4926 24 1 -0.3491 -11.6828 4.7759 25 1 -0.6177 -11.6712 2.3662 26 1 1.6007 -11.7964 3.3385 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8684 -6.1749 5.7437 49 1 1.1624 -10.7993 5.6247 50 1 0.7780 -9.0249 2.5477 51 1 -1.5788 -9.0627 2.9357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10548606_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:26 Heat of formation + Delta-G solvation = -193.479828 kcal Electronic energy + Delta-G solvation = -30321.653061 eV Core-core repulsion = 25899.268607 eV Total energy + Delta-G solvation = -4422.384455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 378.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.20170 -41.57794 -39.15226 -38.12624 -37.81503 -37.16127 -36.81183 -33.59125 -32.73886 -31.01908 -29.36114 -29.04249 -27.82928 -27.36133 -26.91033 -26.66398 -24.07365 -23.05203 -22.18936 -20.40766 -19.80178 -18.59281 -18.45418 -17.70867 -17.50026 -17.43808 -17.15508 -16.92584 -16.13347 -16.04708 -15.92876 -15.52628 -15.47212 -15.15317 -14.84813 -14.79401 -14.68661 -14.30615 -14.22188 -13.97907 -13.80330 -13.77638 -13.40303 -13.36410 -13.28732 -13.15672 -12.93963 -12.93327 -12.85754 -12.62043 -12.41661 -12.34532 -12.30109 -12.13988 -11.93313 -11.79991 -11.73934 -11.68125 -11.57886 -11.31487 -11.27357 -10.29492 -10.28959 -10.22088 -10.04019 -9.36933 -0.32018 -0.17933 0.86802 1.13887 1.42442 1.45485 1.50874 1.80318 1.90148 2.00269 2.09100 2.14701 2.52872 2.80826 3.25155 3.44391 3.66189 3.89746 3.92263 3.94737 3.99087 4.13607 4.14176 4.17267 4.28793 4.37617 4.41677 4.42978 4.48007 4.49905 4.60885 4.71628 4.75967 4.77464 4.80028 4.81170 4.83831 4.84460 4.86722 5.01669 5.08672 5.09758 5.10688 5.11226 5.22940 5.25936 5.36526 5.42707 5.46298 5.57428 5.62904 5.66520 6.12515 6.85124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.321 2.679 6 C -0.520 4.520 7 C -0.518 4.518 8 O -0.639 6.639 9 C 0.078 3.922 10 C -0.118 4.118 11 C 0.044 3.956 12 O -0.299 6.299 13 C 0.192 3.808 14 C -0.231 4.231 15 C 0.147 3.853 16 F -0.127 7.127 17 C -0.120 4.120 18 Cl -0.052 7.052 19 C -0.052 4.052 20 C -0.118 4.118 21 C -0.068 4.068 22 O -0.557 6.557 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.247 1.247 26 H -0.253 1.253 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.177 0.823 49 H 0.156 0.844 50 H 0.094 0.906 51 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 1.752 -2.847 3.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.450 2.550 6 C -0.621 4.621 7 C -0.620 4.620 8 O -0.599 6.599 9 C 0.003 3.997 10 C -0.156 4.156 11 C -0.030 4.030 12 O -0.211 6.211 13 C 0.144 3.856 14 C -0.251 4.251 15 C 0.127 3.873 16 F -0.105 7.105 17 C -0.148 4.148 18 Cl -0.024 7.024 19 C -0.071 4.071 20 C -0.119 4.119 21 C -0.178 4.178 22 O -0.366 6.366 23 Si 0.784 3.216 24 H -0.185 1.185 25 H -0.170 1.170 26 H -0.177 1.177 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.195 0.805 49 H 0.173 0.827 50 H 0.112 0.888 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.474 0.830 -2.514 2.689 hybrid contribution 0.245 0.810 0.137 0.857 sum 0.719 1.640 -2.377 2.976 Atomic orbital electron populations 1.21542 0.94346 1.01772 1.01770 1.25968 1.00355 1.03035 1.13403 1.21604 1.01289 0.94768 1.02146 1.21542 1.01022 1.00035 0.96809 0.76102 0.62475 0.52587 0.63812 1.27122 1.06841 1.09863 1.18281 1.27103 1.25204 1.05018 1.04681 1.85319 1.79692 1.46620 1.48239 1.22024 0.99267 0.91088 0.87367 1.21452 1.02901 0.93547 0.97667 1.23087 0.99978 0.79492 1.00486 1.86157 1.70183 1.22751 1.41992 1.18487 0.91035 0.89335 0.86744 1.21363 1.05954 1.02726 0.95027 1.17201 0.92539 0.91313 0.86240 1.91556 1.71951 1.90596 1.56411 1.20809 1.07173 0.91296 0.95538 1.98396 1.93071 1.61722 1.49163 1.20830 0.94905 1.00849 0.90488 1.18825 1.02729 0.91866 0.98491 1.24530 0.85107 1.10275 0.97841 1.86465 1.20450 1.75785 1.53941 0.85559 0.81556 0.73626 0.80840 1.18516 1.17042 1.17671 0.92142 0.93464 0.92483 0.91782 0.93271 0.91841 0.92457 0.93487 0.92062 0.90807 0.90508 0.91261 0.91145 0.90506 0.90750 0.90899 0.90630 0.90077 0.90445 0.89338 0.89884 0.80547 0.82656 0.88767 0.75150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.03 7.85 71.98 0.56 0.60 16 2 C -0.39 0.57 0.53 -10.79 -0.01 0.56 16 3 C -0.14 0.29 7.85 71.98 0.56 0.86 16 4 C -0.14 0.06 7.85 71.98 0.56 0.63 16 5 Si 1.32 -5.56 8.45 68.60 0.58 -4.98 16 6 C -0.52 1.88 8.50 113.37 0.96 2.84 16 7 C -0.52 2.07 8.50 113.37 0.96 3.03 16 8 O -0.64 1.30 8.56 -148.98 -1.28 0.02 16 9 C 0.08 -0.45 5.12 71.98 0.37 -0.09 16 10 C -0.12 0.55 5.95 30.59 0.18 0.73 16 11 C 0.04 -0.25 4.74 71.98 0.34 0.09 16 12 O -0.30 0.00 9.47 -92.71 -0.88 -0.87 16 13 C 0.19 0.27 6.66 22.49 0.15 0.42 16 14 C -0.23 -0.02 9.01 22.40 0.20 0.18 16 15 C 0.15 0.57 7.27 22.38 0.16 0.73 16 16 F -0.13 -0.72 16.83 44.97 0.76 0.04 16 17 C -0.12 -0.57 6.33 22.37 0.14 -0.42 16 18 Cl -0.05 -0.29 28.61 -2.72 -0.08 -0.37 16 19 C -0.05 -0.15 8.44 22.27 0.19 0.04 16 20 C -0.12 -0.26 5.31 -19.76 -0.10 -0.36 16 21 C -0.07 0.08 2.37 71.24 0.17 0.25 16 22 O -0.56 0.15 12.86 -148.98 -1.92 -1.77 16 23 Si 0.96 -2.05 25.48 68.60 1.75 -0.30 16 24 H -0.26 -0.11 6.74 99.48 0.67 0.56 16 25 H -0.25 0.65 7.11 99.48 0.71 1.36 16 26 H -0.25 0.21 7.11 99.48 0.71 0.92 16 27 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 28 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.02 7.96 -2.38 -0.02 0.00 16 30 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 31 H 0.05 -0.03 8.14 -2.38 -0.02 -0.05 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 34 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 36 H 0.07 -0.37 7.48 -2.39 -0.02 -0.39 16 37 H 0.08 -0.30 7.79 -2.38 -0.02 -0.31 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.19 16 39 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 40 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 41 H 0.07 -0.40 7.48 -2.38 -0.02 -0.42 16 42 H 0.07 -0.64 7.21 -2.39 -0.02 -0.66 16 43 H 0.08 -0.71 7.21 -2.39 -0.02 -0.72 16 44 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.09 -0.83 7.66 -2.39 -0.02 -0.84 16 47 H 0.08 -0.67 7.66 -2.39 -0.02 -0.69 16 48 H 0.18 -0.98 6.30 -2.91 -0.02 -1.00 16 49 H 0.16 0.11 4.88 -2.91 -0.01 0.09 16 50 H 0.09 -0.38 7.83 -2.38 -0.02 -0.40 16 51 H 0.40 -3.59 8.74 -74.06 -0.65 -4.24 16 Total: 0.00 -12.30 424.91 5.35 -6.95 By element: Atomic # 1 Polarization: -9.81 SS G_CDS: 1.00 Total: -8.82 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.42 Total: 10.10 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: -4.07 Total: -2.62 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.76 Total: 0.04 kcal Atomic # 14 Polarization: -7.61 SS G_CDS: 2.33 Total: -5.28 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -12.30 5.35 -6.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10548606_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.530 kcal (2) G-P(sol) polarization free energy of solvation -12.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds