Wall clock time and date at job start Mon Mar 8 2021 13:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.47095 * 2 1 4 4 C 1.86297 * 109.47167 * 239.99905 * 2 1 3 5 5 C 1.86800 * 109.47125 * 120.00050 * 2 1 3 6 6 C 1.38226 * 120.00033 * 89.99956 * 5 2 1 7 7 C 1.38243 * 120.00044 * 180.02562 * 6 5 2 8 8 C 1.38232 * 119.99640 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99576 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47061 * 89.99980 * 9 8 7 11 11 C 1.35921 * 116.99777 * 179.97438 * 10 9 8 12 12 C 1.38670 * 120.02999 * 0.02562 * 11 10 9 13 13 C 1.38375 * 119.93004 * 179.97438 * 12 11 10 14 14 F 1.35104 * 119.99994 * 180.02562 * 13 12 11 15 15 C 1.38565 * 119.99603 * 359.97438 * 13 12 11 16 16 Cl 1.73597 * 119.96991 * 179.97438 * 15 13 12 17 17 C 1.38336 * 120.06385 * 0.02562 * 15 13 12 18 18 C 1.38151 * 120.06346 * 359.97363 * 17 15 13 19 19 C 1.50699 * 119.99444 * 180.02562 * 18 17 15 20 20 O 1.42901 * 109.47543 * 104.99958 * 19 18 17 21 21 Si 1.86305 * 109.47278 * 344.99905 * 19 18 17 22 22 H 1.48498 * 109.46833 * 180.02562 * 21 19 18 23 23 H 1.48502 * 109.46803 * 300.00332 * 21 19 18 24 24 H 1.48493 * 109.47103 * 60.00041 * 21 19 18 25 25 C 1.38229 * 120.00515 * 0.25890 * 8 7 6 26 26 C 1.38237 * 119.99472 * 359.49000 * 25 8 7 27 27 H 1.09002 * 109.47387 * 299.99994 * 1 2 3 28 28 H 1.09000 * 109.47161 * 59.99725 * 1 2 3 29 29 H 1.08998 * 109.47693 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47029 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46888 * 299.99881 * 3 2 1 32 32 H 1.09002 * 109.46998 * 59.99768 * 3 2 1 33 33 H 1.09006 * 109.47048 * 300.00489 * 4 2 1 34 34 H 1.09000 * 109.47236 * 59.99861 * 4 2 1 35 35 H 1.08993 * 109.47249 * 180.02562 * 4 2 1 36 36 H 1.08004 * 120.00162 * 0.02562 * 6 5 2 37 37 H 1.08003 * 119.99863 * 179.97438 * 7 6 5 38 38 H 1.08995 * 109.47308 * 329.99782 * 9 8 7 39 39 H 1.09001 * 109.46585 * 210.00338 * 9 8 7 40 40 H 1.07998 * 120.03312 * 0.25042 * 12 11 10 41 41 H 1.07998 * 119.97332 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.46920 * 225.00113 * 19 18 17 43 43 H 0.96696 * 114.00063 * 179.97438 * 20 19 18 44 44 H 1.08000 * 120.00427 * 179.72426 * 25 8 7 45 45 H 1.08003 * 119.99721 * 180.23553 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7160 -2.2431 1.4910 7 6 3.1763 -2.8949 2.6199 8 6 3.4067 -2.1839 3.7827 9 6 3.9080 -2.8946 5.0136 10 8 5.3370 -2.8956 5.0142 11 6 5.9531 -3.5010 6.0637 12 6 5.1975 -4.0820 7.0709 13 6 5.8268 -4.6983 8.1381 14 9 5.0921 -5.2652 9.1199 15 6 7.2107 -4.7348 8.1991 16 17 7.9995 -5.5075 9.5386 17 6 7.9642 -4.1551 7.1942 18 6 7.3385 -3.5392 6.1276 19 6 8.1609 -2.9088 5.0334 20 8 8.1277 -3.7414 3.8725 21 14 9.9219 -2.7188 5.6111 22 1 10.7321 -2.0970 4.5331 23 1 9.9564 -1.8535 6.8175 24 1 10.4806 -4.0539 5.9434 25 6 3.1718 -0.8222 3.8184 26 6 2.7164 -0.1696 2.6880 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5739 -0.8786 -1.5209 36 1 2.5364 -2.7985 0.5823 37 1 3.3559 -3.9595 2.5932 38 1 3.5439 -3.9219 5.0136 39 1 3.5445 -2.3803 5.9033 40 1 4.1190 -4.0575 7.0202 41 1 9.0427 -4.1848 7.2430 42 1 7.7509 -1.9287 4.7895 43 1 8.6369 -3.3964 3.1263 44 1 3.3475 -0.2675 4.7283 45 1 2.5365 0.8950 2.7148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10548606_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:24 Heat of formation + Delta-G solvation = -102.651765 kcal Electronic energy + Delta-G solvation = -27793.623774 eV Core-core repulsion = 23647.568406 eV Total energy + Delta-G solvation = -4146.055367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 368.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.23526 -41.68150 -40.09111 -38.78705 -37.86399 -37.19252 -33.23782 -32.74545 -31.86086 -31.04823 -29.42584 -28.28056 -28.26093 -27.48354 -26.71728 -24.17317 -23.46934 -22.91808 -21.95921 -19.87550 -18.69191 -18.51766 -17.65282 -17.43266 -17.27855 -17.20079 -16.80737 -16.23702 -15.94328 -15.59384 -15.43277 -15.38133 -14.82125 -14.32655 -14.31375 -14.26458 -14.08237 -14.03250 -13.99570 -13.72158 -13.68380 -13.34951 -13.28679 -13.12577 -13.10596 -12.97520 -12.95132 -12.59031 -12.45267 -12.18668 -11.99977 -11.97064 -11.82082 -11.66739 -10.91418 -10.76216 -10.74489 -10.33095 -10.26311 -9.78376 -9.68099 -9.41220 -0.36049 -0.21951 0.15560 0.54412 0.83760 1.10451 1.42887 1.48300 1.84212 1.87085 1.90603 2.03859 2.04368 2.21126 2.67993 2.76054 3.01677 3.20542 3.40004 3.61796 3.71014 3.80028 3.86807 3.98235 4.11778 4.23792 4.24355 4.30488 4.39503 4.54377 4.56975 4.67970 4.73046 4.84159 4.85671 4.85753 4.89778 4.90642 4.91225 4.91782 5.01846 5.17706 5.18004 5.41605 5.58352 5.60462 5.61576 5.68940 5.72384 6.04133 6.14060 6.80485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.371 4.371 6 C -0.104 4.104 7 C -0.119 4.119 8 C -0.102 4.102 9 C 0.090 3.910 10 O -0.294 6.294 11 C 0.190 3.810 12 C -0.232 4.232 13 C 0.149 3.851 14 F -0.127 7.127 15 C -0.119 4.119 16 Cl -0.050 7.050 17 C -0.051 4.051 18 C -0.117 4.117 19 C -0.069 4.069 20 O -0.557 6.557 21 Si 0.963 3.037 22 H -0.246 1.246 23 H -0.252 1.252 24 H -0.258 1.258 25 C -0.119 4.119 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.397 0.603 44 H 0.131 0.869 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 4.069 -4.340 6.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.122 4.122 7 C -0.137 4.137 8 C -0.102 4.102 9 C 0.017 3.983 10 O -0.207 6.207 11 C 0.142 3.858 12 C -0.252 4.252 13 C 0.128 3.872 14 F -0.105 7.105 15 C -0.146 4.146 16 Cl -0.021 7.021 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.179 4.179 20 O -0.366 6.366 21 Si 0.785 3.215 22 H -0.169 1.169 23 H -0.175 1.175 24 H -0.182 1.182 25 C -0.137 4.137 26 C -0.121 4.121 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.190 0.810 41 H 0.175 0.825 42 H 0.108 0.892 43 H 0.248 0.752 44 H 0.149 0.851 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.765 3.776 -3.629 5.293 hybrid contribution -0.311 -0.359 0.367 0.600 sum -1.075 3.417 -3.262 4.845 Atomic orbital electron populations 1.26295 1.21653 1.04439 1.04570 0.77167 0.65129 0.64651 0.61666 1.26274 1.06430 1.19337 1.04872 1.26293 1.06422 1.08473 1.15848 1.28009 1.02318 0.99548 1.11187 1.21371 0.97430 0.95219 0.98159 1.21365 0.98974 1.00407 0.92986 1.19527 1.01549 0.94503 0.94612 1.21941 0.77346 1.01599 0.97459 1.86268 1.22233 1.71482 1.40704 1.18530 0.91181 0.90043 0.86019 1.21326 1.02699 1.06128 0.95038 1.17184 0.87162 0.95772 0.87063 1.91560 1.76748 1.82233 1.59943 1.20789 0.91213 1.07471 0.95166 1.98396 1.79874 1.79606 1.44247 1.20838 1.01045 0.93948 0.91081 1.18824 0.91089 1.04544 0.97335 1.24572 1.09480 0.96042 0.87784 1.86468 1.76652 1.49454 1.24048 0.85540 0.74358 0.80493 0.81101 1.16933 1.17526 1.18206 1.21383 0.98995 0.93624 0.99669 1.21393 0.97381 1.00756 0.92620 0.91357 0.90731 0.91439 0.91272 0.90720 0.90858 0.90989 0.90713 0.91306 0.84489 0.85689 0.89710 0.89128 0.80993 0.82457 0.89225 0.75248 0.85136 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.02 8.65 113.37 0.98 3.00 16 2 Si 1.13 -7.44 12.32 68.60 0.85 -6.59 16 3 C -0.46 2.42 8.53 113.37 0.97 3.39 16 4 C -0.46 2.26 8.53 113.37 0.97 3.23 16 5 C -0.37 0.68 4.59 22.27 0.10 0.78 16 6 C -0.10 0.04 9.29 22.27 0.21 0.25 16 7 C -0.12 -0.16 9.70 22.27 0.22 0.06 16 8 C -0.10 -0.12 5.51 -19.87 -0.11 -0.23 16 9 C 0.09 -0.09 4.87 71.24 0.35 0.26 16 10 O -0.29 -0.89 9.45 -92.66 -0.88 -1.77 16 11 C 0.19 0.63 6.66 22.49 0.15 0.78 16 12 C -0.23 -0.47 9.01 22.41 0.20 -0.27 16 13 C 0.15 0.77 7.27 22.38 0.16 0.93 16 14 F -0.13 -0.87 16.83 44.97 0.76 -0.12 16 15 C -0.12 -0.66 6.33 22.37 0.14 -0.51 16 16 Cl -0.05 -0.30 28.61 -2.72 -0.08 -0.38 16 17 C -0.05 -0.19 8.44 22.27 0.19 0.00 16 18 C -0.12 -0.41 5.31 -19.76 -0.10 -0.51 16 19 C -0.07 -0.01 2.37 71.24 0.17 0.16 16 20 O -0.56 -0.64 12.86 -148.98 -1.92 -2.55 16 21 Si 0.96 -1.44 25.49 68.60 1.75 0.31 16 22 H -0.25 0.52 7.11 99.48 0.71 1.23 16 23 H -0.25 0.09 7.11 99.48 0.71 0.79 16 24 H -0.26 -0.17 6.73 99.48 0.67 0.50 16 25 C -0.12 -0.03 9.70 22.27 0.22 0.18 16 26 C -0.10 0.11 9.29 22.27 0.21 0.32 16 27 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 28 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.07 -0.42 7.69 -2.39 -0.02 -0.44 16 33 H 0.07 -0.37 7.69 -2.38 -0.02 -0.39 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 36 H 0.14 -0.57 7.43 -2.91 -0.02 -0.59 16 37 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 38 H 0.08 -0.26 7.60 -2.39 -0.02 -0.28 16 39 H 0.09 -0.40 7.61 -2.39 -0.02 -0.41 16 40 H 0.17 -0.47 6.30 -2.91 -0.02 -0.49 16 41 H 0.16 0.19 4.88 -2.91 -0.01 0.18 16 42 H 0.09 -0.18 7.83 -2.39 -0.02 -0.20 16 43 H 0.40 -3.02 8.74 -74.06 -0.65 -3.67 16 44 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 45 H 0.14 -0.72 7.43 -2.91 -0.02 -0.74 16 Total: 0.00 -13.19 395.59 6.58 -6.61 By element: Atomic # 1 Polarization: -8.42 SS G_CDS: 1.09 Total: -7.33 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.01 Total: 11.81 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -2.79 Total: -4.32 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.76 Total: -0.12 kcal Atomic # 14 Polarization: -8.88 SS G_CDS: 2.59 Total: -6.28 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -13.19 6.58 -6.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10548606_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.037 kcal (2) G-P(sol) polarization free energy of solvation -13.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds